HG10005914 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10005914
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionPHD finger protein EHD3
LocationChr07: 8292178 .. 8292468 (-)
RNA-Seq ExpressionHG10005914
SyntenyHG10005914
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTATAGAAGATGGGAAAAGCAATGGGGATTGCACGGGACGCGCTTTGGAGGTCAATTTCGTGAAGAGGGAGGCAGGGGAAAACGGAATCGGAATGGGGGTTTTGAATGTTGTTACTACAGGGGTTCCAGGAACTAGCGATGGTTTTCGAACTTACAAGAGGCGGAAGCAGACTAGGTTGACCTCTGGGAGCGAATGCAAGGGAGATAGCAAGACTCACGTTGAAGCTGTTGGTCAATTAGTGGTTCGGGTTTCTCTCTCCCTTTCAATCTATTGCAAATTCAATTAA

mRNA sequence

ATGGTTATAGAAGATGGGAAAAGCAATGGGGATTGCACGGGACGCGCTTTGGAGGTCAATTTCGTGAAGAGGGAGGCAGGGGAAAACGGAATCGGAATGGGGGTTTTGAATGTTGTTACTACAGGGGTTCCAGGAACTAGCGATGGTTTTCGAACTTACAAGAGGCGGAAGCAGACTAGGTTGACCTCTGGGAGCGAATGCAAGGGAGATAGCAAGACTCACGTTGAAGCTGTTGGTCAATTAGTGGTTCGGGTTTCTCTCTCCCTTTCAATCTATTGCAAATTCAATTAA

Coding sequence (CDS)

ATGGTTATAGAAGATGGGAAAAGCAATGGGGATTGCACGGGACGCGCTTTGGAGGTCAATTTCGTGAAGAGGGAGGCAGGGGAAAACGGAATCGGAATGGGGGTTTTGAATGTTGTTACTACAGGGGTTCCAGGAACTAGCGATGGTTTTCGAACTTACAAGAGGCGGAAGCAGACTAGGTTGACCTCTGGGAGCGAATGCAAGGGAGATAGCAAGACTCACGTTGAAGCTGTTGGTCAATTAGTGGTTCGGGTTTCTCTCTCCCTTTCAATCTATTGCAAATTCAATTAA

Protein sequence

MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTRLTSGSECKGDSKTHVEAVGQLVVRVSLSLSIYCKFN
Homology
BLAST of HG10005914 vs. NCBI nr
Match: XP_038897858.1 (PHD finger protein EHD3 [Benincasa hispida])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 75/82 (91.46%), Postives = 75/82 (91.46%), Query Frame = 0

Query: 1  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTR 60
          MVIEDG SNGDCTG ALEV FVKREA ENGIG GVLNVVTTGVPGTSDGFRTYKRRKQ R
Sbjct: 1  MVIEDGNSNGDCTGCALEVKFVKREAVENGIGKGVLNVVTTGVPGTSDGFRTYKRRKQIR 60

Query: 61 LTSGSECKGDSKTHVEAVGQLV 83
          LTSGSECKGDSKTHVEA GQLV
Sbjct: 61 LTSGSECKGDSKTHVEAAGQLV 82

BLAST of HG10005914 vs. NCBI nr
Match: XP_022153712.1 (PHD finger protein EHD3 [Momordica charantia])

HSP 1 Score: 145.6 bits (366), Expect = 2.2e-31
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 0

Query: 1  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTR 60
          MVIED KSNGDCTG ALEV FVK EAG+NG+GMGVLNVVT GVPGTSDGFRTYKRRK T+
Sbjct: 1  MVIEDEKSNGDCTGHALEVKFVKSEAGKNGVGMGVLNVVTEGVPGTSDGFRTYKRRKHTK 60

Query: 61 LTSGSECKGDSKTHVEAVGQLV 83
          LTSGSECKGD KTHVEA GQL+
Sbjct: 61 LTSGSECKGDGKTHVEAAGQLM 82

BLAST of HG10005914 vs. NCBI nr
Match: XP_022975583.1 (PHD finger protein EHD3-like [Cucurbita maxima] >XP_022975586.1 PHD finger protein EHD3-like [Cucurbita maxima] >XP_022975591.1 PHD finger protein EHD3-like [Cucurbita maxima])

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-29
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 1  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTR 60
          M+IE+ KSNGD TGRALEV FVK EAGENGIGMG+LNVVT GVPGTSDGFRTYKRRKQT+
Sbjct: 1  MIIENRKSNGDFTGRALEVKFVKSEAGENGIGMGILNVVTEGVPGTSDGFRTYKRRKQTK 60

Query: 61 LTSGSECKGDSKTHVEAVGQLV 83
          LT GSECKG+ KTHVEA GQ V
Sbjct: 61 LTCGSECKGNGKTHVEASGQFV 82

BLAST of HG10005914 vs. NCBI nr
Match: XP_023535868.1 (PHD finger protein EHD3-like [Cucurbita pepo subsp. pepo] >XP_023535869.1 PHD finger protein EHD3-like [Cucurbita pepo subsp. pepo] >XP_023535870.1 PHD finger protein EHD3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-29
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 1  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTR 60
          M+IE+ KSNGD TGRALEV FVK EAGENGIGMG+LNVVT GVPGTSDGFRTYKRRKQT+
Sbjct: 1  MIIENRKSNGDFTGRALEVKFVKSEAGENGIGMGILNVVTEGVPGTSDGFRTYKRRKQTK 60

Query: 61 LTSGSECKGDSKTHVEAVGQLV 83
          LT GSECKG+ KTHVEA GQ V
Sbjct: 61 LTCGSECKGNGKTHVEASGQFV 82

BLAST of HG10005914 vs. NCBI nr
Match: XP_022936336.1 (PHD finger protein EHD3-like [Cucurbita moschata] >XP_022936337.1 PHD finger protein EHD3-like [Cucurbita moschata] >XP_022936338.1 PHD finger protein EHD3-like [Cucurbita moschata])

HSP 1 Score: 139.4 bits (350), Expect = 1.6e-29
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 1  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTR 60
          M+IE+ KSNGD TGRALEV FVK EAGENGIGMG+LNVVT GVPGTSDGFRTYKRRKQT+
Sbjct: 1  MIIENRKSNGDFTGRALEVKFVKSEAGENGIGMGILNVVTEGVPGTSDGFRTYKRRKQTK 60

Query: 61 LTSGSECKGDSKTHVEAVGQLV 83
          LT GSECKG+ KTHVEA GQ V
Sbjct: 61 LTCGSECKGNGKTHVEASGQFV 82

BLAST of HG10005914 vs. ExPASy TrEMBL
Match: A0A6J1DJP9 (PHD finger protein EHD3 OS=Momordica charantia OX=3673 GN=LOC111021164 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.1e-31
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 0

Query: 1  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTR 60
          MVIED KSNGDCTG ALEV FVK EAG+NG+GMGVLNVVT GVPGTSDGFRTYKRRK T+
Sbjct: 1  MVIEDEKSNGDCTGHALEVKFVKSEAGKNGVGMGVLNVVTEGVPGTSDGFRTYKRRKHTK 60

Query: 61 LTSGSECKGDSKTHVEAVGQLV 83
          LTSGSECKGD KTHVEA GQL+
Sbjct: 61 LTSGSECKGDGKTHVEAAGQLM 82

BLAST of HG10005914 vs. ExPASy TrEMBL
Match: A0A6J1IEM0 (PHD finger protein EHD3-like OS=Cucurbita maxima OX=3661 GN=LOC111475137 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.7e-30
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 1  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTR 60
          M+IE+ KSNGD TGRALEV FVK EAGENGIGMG+LNVVT GVPGTSDGFRTYKRRKQT+
Sbjct: 1  MIIENRKSNGDFTGRALEVKFVKSEAGENGIGMGILNVVTEGVPGTSDGFRTYKRRKQTK 60

Query: 61 LTSGSECKGDSKTHVEAVGQLV 83
          LT GSECKG+ KTHVEA GQ V
Sbjct: 61 LTCGSECKGNGKTHVEASGQFV 82

BLAST of HG10005914 vs. ExPASy TrEMBL
Match: A0A6J1F863 (PHD finger protein EHD3-like OS=Cucurbita moschata OX=3662 GN=LOC111442986 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 7.7e-30
Identity = 68/82 (82.93%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 1  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTR 60
          M+IE+ KSNGD TGRALEV FVK EAGENGIGMG+LNVVT GVPGTSDGFRTYKRRKQT+
Sbjct: 1  MIIENRKSNGDFTGRALEVKFVKSEAGENGIGMGILNVVTEGVPGTSDGFRTYKRRKQTK 60

Query: 61 LTSGSECKGDSKTHVEAVGQLV 83
          LT GSECKG+ KTHVEA GQ V
Sbjct: 61 LTCGSECKGNGKTHVEASGQFV 82

BLAST of HG10005914 vs. ExPASy TrEMBL
Match: A0A6J1EE29 (PHD finger protein EHD3-like OS=Cucurbita moschata OX=3662 GN=LOC111433442 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.7e-29
Identity = 67/84 (79.76%), Postives = 73/84 (86.90%), Query Frame = 0

Query: 1  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTTGVPGTSDGFRTYKRRKQTR 60
          MVIEDG+SNG+CTGR LEV F+K  AG+NGIGMGVLNVVT GVPGTSDGFRTYKRRKQT+
Sbjct: 1  MVIEDGESNGNCTGRPLEVKFMKSVAGKNGIGMGVLNVVTEGVPGTSDGFRTYKRRKQTK 60

Query: 61 LTSGSECKGDSKTHVEAVGQLVVR 85
          L  GSECKGD K HVEA  QLVV+
Sbjct: 61 LALGSECKGDGKVHVEAASQLVVQ 84

BLAST of HG10005914 vs. ExPASy TrEMBL
Match: A0A6J1IZG8 (PHD finger protein EHD3-like OS=Cucurbita maxima OX=3661 GN=LOC111480549 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 8.0e-27
Identity = 65/83 (78.31%), Postives = 70/83 (84.34%), Query Frame = 0

Query: 1  MVIEDGKSNGDCTGRALEVNFVKREAGENGIGMGVLNVVTT-GVPGTSDGFRTYKRRKQT 60
          MVIEDG+SNG+CTGR LEV F+K  AG+NGIGMGVLNVVT  GVPGTSDGFRTYKRRKQT
Sbjct: 1  MVIEDGESNGNCTGRPLEVKFMKSVAGKNGIGMGVLNVVTEGGVPGTSDGFRTYKRRKQT 60

Query: 61 RLTSGSECKGDSKTHVEAVGQLV 83
          +L  GSEC GD K HVEA  QLV
Sbjct: 61 KLAFGSECMGDGKVHVEAASQLV 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038897858.11.2e-3291.46PHD finger protein EHD3 [Benincasa hispida][more]
XP_022153712.12.2e-3185.37PHD finger protein EHD3 [Momordica charantia][more]
XP_022975583.11.6e-2982.93PHD finger protein EHD3-like [Cucurbita maxima] >XP_022975586.1 PHD finger prote... [more]
XP_023535868.11.6e-2982.93PHD finger protein EHD3-like [Cucurbita pepo subsp. pepo] >XP_023535869.1 PHD fi... [more]
XP_022936336.11.6e-2982.93PHD finger protein EHD3-like [Cucurbita moschata] >XP_022936337.1 PHD finger pro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DJP91.1e-3185.37PHD finger protein EHD3 OS=Momordica charantia OX=3673 GN=LOC111021164 PE=4 SV=1[more]
A0A6J1IEM07.7e-3082.93PHD finger protein EHD3-like OS=Cucurbita maxima OX=3661 GN=LOC111475137 PE=4 SV... [more]
A0A6J1F8637.7e-3082.93PHD finger protein EHD3-like OS=Cucurbita moschata OX=3662 GN=LOC111442986 PE=4 ... [more]
A0A6J1EE291.7e-2979.76PHD finger protein EHD3-like OS=Cucurbita moschata OX=3662 GN=LOC111433442 PE=4 ... [more]
A0A6J1IZG88.0e-2778.31PHD finger protein EHD3-like OS=Cucurbita maxima OX=3661 GN=LOC111480549 PE=4 SV... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10005914.1HG10005914.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding