HG10005818 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005818
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	phospholipase A-2-activating protein
Location	Chr07: 6356616 .. 6357329 (-)
RNA-Seq Expression	HG10005818
Synteny	HG10005818

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAGGGTGATTGCTTACTATGAGTGTTCCACTCTTCTTCTCTATTTGGAACTTGTCAGTTGCGCTGTATTGTTAATCGAGAAGAAGGATCTTGATGGTCAGGGTCAAGTTCTTTCAGCTGCTCTTGAGGTACTTTTTTTTGTCACAATTTTACATGTACATAAATCTGATTTCTTTCTGCTCTAGTTCTTAGATTGATCCATGGGAAACTTGGGTGTCTGATCATTGCTCTGGGAGAACCTTTCTGATTCCATGCATCATGATAGCATAAATTGCTTTTGGTAGATTGCAGAAGAGGAAAATCTGGAAGCTGATTCAAAGTTCAGGGCCTTGGTTGCCATTGGATCTCTGGTATTTTCTTACTACTACAATACTTACATTTCCTTTTACGATATTTTCGTTGAAACCCTTTTCCAGGCACATCCAATTACTTTTCTTTTGATTTGATCACTTCAAACCGTGTATCTGCTGGAAATTTTGTACCTGAACCTAAAGCATGATTGATATATCTGATGCCGCTTATGAATGTACTGTCAAATTCCAAGTAAAATTTCTGTATTTTTTTCGTAGATGCTCGAAGGGGGTGATGATATGAAAAAAACGGCACTGGACTTTGATGTAGAGAGCATTGCCCGAAAAGTGAAGACTTCTAAAGATGCCAAGATTGCTGAAGTTGGAGCTGATATTGAAATGTTGACAAAAGAAAGATGA

mRNA sequence

ATGCATAGGGTGATTGCTTACTATGAGTGTTCCACTCTTCTTCTCTATTTGGAACTTGTCAGTTGCGCTGTATTGTTAATCGAGAAGAAGGATCTTGATGGTCAGGGTCAAGTTCTTTCAGCTGCTCTTGAGATTGCAGAAGAGGAAAATCTGGAAGCTGATTCAAAGTTCAGGGCCTTGGTTGCCATTGGATCTCTGATGCTCGAAGGGGGTGATGATATGAAAAAAACGGCACTGGACTTTGATGTAGAGAGCATTGCCCGAAAAGTGAAGACTTCTAAAGATGCCAAGATTGCTGAAGTTGGAGCTGATATTGAAATGTTGACAAAAGAAAGATGA

Coding sequence (CDS)

ATGCATAGGGTGATTGCTTACTATGAGTGTTCCACTCTTCTTCTCTATTTGGAACTTGTCAGTTGCGCTGTATTGTTAATCGAGAAGAAGGATCTTGATGGTCAGGGTCAAGTTCTTTCAGCTGCTCTTGAGATTGCAGAAGAGGAAAATCTGGAAGCTGATTCAAAGTTCAGGGCCTTGGTTGCCATTGGATCTCTGATGCTCGAAGGGGGTGATGATATGAAAAAAACGGCACTGGACTTTGATGTAGAGAGCATTGCCCGAAAAGTGAAGACTTCTAAAGATGCCAAGATTGCTGAAGTTGGAGCTGATATTGAAATGTTGACAAAAGAAAGATGA

Protein sequence

MHRVIAYYECSTLLLYLELVSCAVLLIEKKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMLEGGDDMKKTALDFDVESIARKVKTSKDAKIAEVGADIEMLTKER

Homology

[Close]

BLAST of HG10005818 vs. NCBI nr
Match: XP_038887808.1 (phospholipase A-2-activating protein [Benincasa hispida])

HSP 1 Score: 156.0 bits (393), Expect = 1.9e-34
Identity = 84/94 (89.36%), Postives = 90/94 (95.74%), Query Frame = 0


Query: 19  LVSCAVLLIEKKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMLEGGDDMKKTA 78
           +++ AVLLIEKKDLDGQGQVLSAA EIAEEENLEADSKFRALVAIGSLMLEG DD+K+TA
Sbjct: 664 ILNSAVLLIEKKDLDGQGQVLSAAFEIAEEENLEADSKFRALVAIGSLMLEGCDDIKRTA 723

Query: 79  LDFDVESIARKVKTSKDAKIAEVGADIEMLTKER 113
           LDFDVESIARK KTSKDAKIAEVGADIE+LTKER
Sbjct: 724 LDFDVESIARKAKTSKDAKIAEVGADIELLTKER 757

[Close]

BLAST of HG10005818 vs. NCBI nr
Match: XP_031744253.1 (phospholipase A-2-activating protein isoform X1 [Cucumis sativus] >KAE8645890.1 hypothetical protein Csa_017692 [Cucumis sativus])

HSP 1 Score: 151.8 bits (382), Expect = 3.6e-33
Identity = 80/94 (85.11%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 19  LVSCAVLLIEKKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMLEGGDDMKKTA 78
           +++ +VLLI++KDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLM+EGGDD+K+TA
Sbjct: 664 ILNFSVLLIDEKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMVEGGDDIKRTA 723

Query: 79  LDFDVESIARKVKTSKDAKIAEVGADIEMLTKER 113
           LDFDVESIA+K K SKDAKIAEVGADIE+LTKER
Sbjct: 724 LDFDVESIAQKAKISKDAKIAEVGADIELLTKER 757

[Close]

BLAST of HG10005818 vs. NCBI nr
Match: XP_008454875.1 (PREDICTED: phospholipase A-2-activating protein [Cucumis melo] >KAA0031249.1 phospholipase A-2-activating protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 3.6e-33
Identity = 80/94 (85.11%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 19  LVSCAVLLIEKKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMLEGGDDMKKTA 78
           +++ +VLLI++KDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLM+EGGDD+K+TA
Sbjct: 664 ILNFSVLLIDEKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMVEGGDDIKRTA 723

Query: 79  LDFDVESIARKVKTSKDAKIAEVGADIEMLTKER 113
           LDFDVESIA+K KTSKDAKIAEVGADIE+L KER
Sbjct: 724 LDFDVESIAQKAKTSKDAKIAEVGADIELLIKER 757

[Close]

BLAST of HG10005818 vs. NCBI nr
Match: TYK06700.1 (phospholipase A-2-activating protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.8 bits (382), Expect = 3.6e-33
Identity = 80/94 (85.11%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 19  LVSCAVLLIEKKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMLEGGDDMKKTA 78
           +++ +VLLI++KDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLM+EGGDD+K+TA
Sbjct: 651 ILNFSVLLIDEKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMVEGGDDIKRTA 710

Query: 79  LDFDVESIARKVKTSKDAKIAEVGADIEMLTKER 113
           LDFDVESIA+K KTSKDAKIAEVGADIE+L KER
Sbjct: 711 LDFDVESIAQKAKTSKDAKIAEVGADIELLIKER 744

[Close]

BLAST of HG10005818 vs. NCBI nr
Match: XP_022136219.1 (phospholipase A-2-activating protein [Momordica charantia] >XP_022136220.1 phospholipase A-2-activating protein [Momordica charantia])

HSP 1 Score: 151.0 bits (380), Expect = 6.2e-33
Identity = 80/92 (86.96%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 19  LVSCAVLLIEKKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMLEGGDDMKKTA 78
           +++ AVLLIEKKDLDG GQVLSAALEIAEEENLEADSKFRALVAIGS+MLEGGDD+K+TA
Sbjct: 664 ILNFAVLLIEKKDLDGLGQVLSAALEIAEEENLEADSKFRALVAIGSMMLEGGDDVKRTA 723

Query: 79  LDFDVESIARKVKTSKDAKIAEVGADIEMLTK 111
           LDFDV+SIARK KTSKD+KIAEVGADIE+LTK
Sbjct: 724 LDFDVQSIARKAKTSKDSKIAEVGADIELLTK 755

[Close]

BLAST of HG10005818 vs. ExPASy TrEMBL
Match: A0A5D3C5T3 (Phospholipase A-2-activating protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00010 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.8e-33
Identity = 80/94 (85.11%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 19  LVSCAVLLIEKKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMLEGGDDMKKTA 78
           +++ +VLLI++KDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLM+EGGDD+K+TA
Sbjct: 651 ILNFSVLLIDEKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMVEGGDDIKRTA 710

Query: 79  LDFDVESIARKVKTSKDAKIAEVGADIEMLTKER 113
           LDFDVESIA+K KTSKDAKIAEVGADIE+L KER
Sbjct: 711 LDFDVESIAQKAKTSKDAKIAEVGADIELLIKER 744

[Close]

BLAST of HG10005818 vs. ExPASy TrEMBL
Match: A0A5A7SPK0 (Phospholipase A-2-activating protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G00010 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.8e-33
Identity = 80/94 (85.11%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 19  LVSCAVLLIEKKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMLEGGDDMKKTA 78
           +++ +VLLI++KDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLM+EGGDD+K+TA
Sbjct: 664 ILNFSVLLIDEKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMVEGGDDIKRTA 723

Query: 79  LDFDVESIARKVKTSKDAKIAEVGADIEMLTKER 113
           LDFDVESIA+K KTSKDAKIAEVGADIE+L KER
Sbjct: 724 LDFDVESIAQKAKTSKDAKIAEVGADIELLIKER 757

[Close]

BLAST of HG10005818 vs. ExPASy TrEMBL
Match: A0A0A0K2V5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075650 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.8e-33
Identity = 80/94 (85.11%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 19  LVSCAVLLIEKKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMLEGGDDMKKTA 78
           +++ +VLLI++KDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLM+EGGDD+K+TA
Sbjct: 335 ILNFSVLLIDEKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMVEGGDDIKRTA 394

Query: 79  LDFDVESIARKVKTSKDAKIAEVGADIEMLTKER 113
           LDFDVESIA+K K SKDAKIAEVGADIE+LTKER
Sbjct: 395 LDFDVESIAQKAKISKDAKIAEVGADIELLTKER 428

[Close]

BLAST of HG10005818 vs. ExPASy TrEMBL
Match: A0A1S3C0S7 (phospholipase A-2-activating protein OS=Cucumis melo OX=3656 GN=LOC103495187 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.8e-33
Identity = 80/94 (85.11%), Postives = 91/94 (96.81%), Query Frame = 0


Query: 19  LVSCAVLLIEKKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMLEGGDDMKKTA 78
           +++ +VLLI++KDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLM+EGGDD+K+TA
Sbjct: 664 ILNFSVLLIDEKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMVEGGDDIKRTA 723

Query: 79  LDFDVESIARKVKTSKDAKIAEVGADIEMLTKER 113
           LDFDVESIA+K KTSKDAKIAEVGADIE+L KER
Sbjct: 724 LDFDVESIAQKAKTSKDAKIAEVGADIELLIKER 757

[Close]

BLAST of HG10005818 vs. ExPASy TrEMBL
Match: A0A6J1C3A1 (phospholipase A-2-activating protein OS=Momordica charantia OX=3673 GN=LOC111007968 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.0e-33
Identity = 80/92 (86.96%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 19  LVSCAVLLIEKKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMLEGGDDMKKTA 78
           +++ AVLLIEKKDLDG GQVLSAALEIAEEENLEADSKFRALVAIGS+MLEGGDD+K+TA
Sbjct: 664 ILNFAVLLIEKKDLDGLGQVLSAALEIAEEENLEADSKFRALVAIGSMMLEGGDDVKRTA 723

Query: 79  LDFDVESIARKVKTSKDAKIAEVGADIEMLTK 111
           LDFDV+SIARK KTSKD+KIAEVGADIE+LTK
Sbjct: 724 LDFDVQSIARKAKTSKDSKIAEVGADIELLTK 755

[Close]

BLAST of HG10005818 vs. TAIR 10
Match: AT3G18860.1 (transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 114.0 bits (284), Expect = 7.8e-26
Identity = 63/93 (67.74%), Postives = 79/93 (84.95%), Query Frame = 0


Query: 19  LVSCAVLLIEKKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMLEGGDDMKKTA 78
           L++ AVLLIEKKD +GQ QVLSAAL++AEEE  + DSKFR+LVAIGSLMLEG   +KK A
Sbjct: 670 LLNYAVLLIEKKDQEGQAQVLSAALQVAEEEAADVDSKFRSLVAIGSLMLEG--LVKKIA 729

Query: 79  LDFDVESIARKVKTSKDAKIAEVGADIEMLTKE 112
           +DFDVESIA+  K SK+AKIAEVGADI+++ ++
Sbjct: 730 IDFDVESIAKSAKASKEAKIAEVGADIDLVIRQ 760

[Close]

BLAST of HG10005818 vs. TAIR 10
Match: AT3G18860.2 (transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 112.1 bits (279), Expect = 3.0e-25
Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 19  LVSCAVLLIEKKDLDGQGQVLSAALEIAEEENLEADSKFRALVAIGSLMLEGGDDMKKTA 78
           L++ AVLLIEKKD +GQ QVLSAAL++ EEE  + DSKFR+LVAIGSLMLEG   +KK A
Sbjct: 670 LLNYAVLLIEKKDQEGQAQVLSAALQVPEEEAADVDSKFRSLVAIGSLMLEG--LVKKIA 729

Query: 79  LDFDVESIARKVKTSKDAKIAEVGADIEMLTKE 112
           +DFDVESIA+  K SK+AKIAEVGADI+++ ++
Sbjct: 730 IDFDVESIAKSAKASKEAKIAEVGADIDLVIRQ 760

The following BLAST results are available for this feature:

BLAST of HG10005818 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887808.1	1.9e-34	89.36	phospholipase A-2-activating protein [Benincasa hispida]	[more]
XP_031744253.1	3.6e-33	85.11	phospholipase A-2-activating protein isoform X1 [Cucumis sativus] >KAE8645890.1 ...	[more]
XP_008454875.1	3.6e-33	85.11	PREDICTED: phospholipase A-2-activating protein [Cucumis melo] >KAA0031249.1 pho...	[more]
TYK06700.1	3.6e-33	85.11	phospholipase A-2-activating protein [Cucumis melo var. makuwa]	[more]
XP_022136219.1	6.2e-33	86.96	phospholipase A-2-activating protein [Momordica charantia] >XP_022136220.1 phosp...	[more]

BLAST of HG10005818 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10005818 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5T3	1.8e-33	85.11	Phospholipase A-2-activating protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7SPK0	1.8e-33	85.11	Phospholipase A-2-activating protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0K2V5	1.8e-33	85.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G075650 PE=4 SV=1	[more]
A0A1S3C0S7	1.8e-33	85.11	phospholipase A-2-activating protein OS=Cucumis melo OX=3656 GN=LOC103495187 PE=...	[more]
A0A6J1C3A1	3.0e-33	86.96	phospholipase A-2-activating protein OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of HG10005818 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18860.1	7.8e-26	67.74	transducin family protein / WD-40 repeat family protein	[more]
AT3G18860.2	3.0e-25	66.67	transducin family protein / WD-40 repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 16..108 e-value: 3.8E-13 score: 51.1
IPR013535	PUL domain	PFAM	PF08324	PUL	coord: 23..104 e-value: 4.1E-11 score: 42.6
None	No IPR available	PANTHER	PTHR19849	PHOSPHOLIPASE A-2-ACTIVATING PROTEIN	coord: 19..109
None	No IPR available	PANTHER	PTHR19849:SF0	PHOSPHOLIPASE A2-ACTIVATING PROTEIN	coord: 19..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005818.1	HG10005818.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0010992	ubiquitin recycling
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043130	ubiquitin binding