HG10005340 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10005340
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Wound-responsive family protein
Location	Chr07: 1686585 .. 1686863 (-)
RNA-Seq Expression	HG10005340
Synteny	HG10005340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTACCTGAACAGAGTTGGAATGGCGGCGAGCGTGGCGGTGGCTCAAGGACACACGGAGATCGGACACAAGTGGAAATCTGGACTCAAATCTCTTCGACAAGGTCGGAGGCTTTTGTCTTCCGGTGAAAATTCGGCGGATCTCCGCCCACTTTCCAGTTTGGTTGGATCGGAAGGTCCTGGAGTTGTCCGGAGCTGTGACGTTGATGAGAGGATGGCGCAAACGGAGGATTCTCTCCGGAGAGTAATGTACTTGAACTGTTGGGGCCAAGGGTGA

mRNA sequence

ATGAGTTACCTGAACAGAGTTGGAATGGCGGCGAGCGTGGCGGTGGCTCAAGGACACACGGAGATCGGACACAAGTGGAAATCTGGACTCAAATCTCTTCGACAAGGTCGGAGGCTTTTGTCTTCCGGTGAAAATTCGGCGGATCTCCGCCCACTTTCCAGTTTGGTTGGATCGGAAGGTCCTGGAGTTGTCCGGAGCTGTGACGTTGATGAGAGGATGGCGCAAACGGAGGATTCTCTCCGGAGAGTAATGTACTTGAACTGTTGGGGCCAAGGGTGA

Coding sequence (CDS)

ATGAGTTACCTGAACAGAGTTGGAATGGCGGCGAGCGTGGCGGTGGCTCAAGGACACACGGAGATCGGACACAAGTGGAAATCTGGACTCAAATCTCTTCGACAAGGTCGGAGGCTTTTGTCTTCCGGTGAAAATTCGGCGGATCTCCGCCCACTTTCCAGTTTGGTTGGATCGGAAGGTCCTGGAGTTGTCCGGAGCTGTGACGTTGATGAGAGGATGGCGCAAACGGAGGATTCTCTCCGGAGAGTAATGTACTTGAACTGTTGGGGCCAAGGGTGA

Protein sequence

MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEGPGVVRSCDVDERMAQTEDSLRRVMYLNCWGQG

Homology

[Close]

BLAST of HG10005340 vs. NCBI nr
Match: KAE8645762.1 (hypothetical protein Csa_020269 [Cucumis sativus])

HSP 1 Score: 179.1 bits (453), Expect = 1.7e-41
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 PGVVRSCDVDERMAQTEDSLRRVMYLNCWGQG 93
           G VRSCDVDER+AQ+EDSLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of HG10005340 vs. NCBI nr
Match: KAA0031600.1 (wound-responsive family protein [Cucumis melo var. makuwa] >TYK07052.1 wound-responsive family protein [Cucumis melo var. makuwa])

HSP 1 Score: 179.1 bits (453), Expect = 1.7e-41
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 PGVVRSCDVDERMAQTEDSLRRVMYLNCWGQG 93
           G VRSCDVDER+AQ+EDSLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of HG10005340 vs. NCBI nr
Match: KAG7011951.1 (hypothetical protein SDJN02_26859, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178.7 bits (452), Expect = 2.3e-41
Identity = 88/92 (95.65%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60

Query: 61 PGVVRSCDVDERMAQTEDSLRRVMYLNCWGQG 93
          PG VRS D DERMAQTEDSLRRVMYLNCWGQG
Sbjct: 61 PGAVRSLDADERMAQTEDSLRRVMYLNCWGQG 92

[Close]

BLAST of HG10005340 vs. NCBI nr
Match: KAG6572339.1 (hypothetical protein SDJN03_29067, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177.6 bits (449), Expect = 5.1e-41
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENPADLRPLSSLVGSEG 60

Query: 61 PGVVRSCDVDERMAQTEDSLRRVMYLNCWGQG 93
          PG VR+ D DERMAQTEDSLRRVMYLNCWGQG
Sbjct: 61 PGAVRNLDADERMAQTEDSLRRVMYLNCWGQG 92

[Close]

BLAST of HG10005340 vs. NCBI nr
Match: KAG6589197.1 (hypothetical protein SDJN03_17762, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022897.1 hypothetical protein SDJN02_16633, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163.3 bits (412), Expect = 9.9e-37
Identity = 80/92 (86.96%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKS RQGR+LLSSGEN ADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSFRQGRKLLSSGENPADLRPLSSLVGSEG 60

Query: 61 PGVVRSCDVDERMAQTEDSLRRVMYLNCWGQG 93
          P  V+S D  ER+AQ+E+SLRRVMYLNCWGQG
Sbjct: 61 PEAVQSFDAAERIAQSEESLRRVMYLNCWGQG 92

[Close]

BLAST of HG10005340 vs. ExPASy TrEMBL
Match: A0A5A7SLJ2 (Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003700 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 8.4e-42
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 PGVVRSCDVDERMAQTEDSLRRVMYLNCWGQG 93
           G VRSCDVDER+AQ+EDSLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of HG10005340 vs. ExPASy TrEMBL
Match: A0A0A0K6Z3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046690 PE=4 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 8.4e-42
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG
Sbjct: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60

Query: 61 PGVVRSCDVDERMAQTEDSLRRVMYLNCWGQG 93
           G VRSCDVDER+AQ+EDSLRRVMYLNCWGQG
Sbjct: 61 SGSVRSCDVDERIAQSEDSLRRVMYLNCWGQG 92

[Close]

BLAST of HG10005340 vs. ExPASy TrEMBL
Match: A0A5N6RB28 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014541 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.6e-24
Identity = 59/92 (64.13%), Postives = 70/92 (76.09%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSYLNR+ MAASVAV QGHT+ G K K GLKSL+ G+R   SG +SADLRP+S ++G + 
Sbjct: 1  MSYLNRIWMAASVAVVQGHTDQGRKVKPGLKSLQLGKRKFFSGSDSADLRPISGMIGLDF 60

Query: 61 PGVVRSCDVDERMAQTEDSLRRVMYLNCWGQG 93
           G + S D DER  Q E+SLRRVMYLNCWGQG
Sbjct: 61 AGFLGSSDADERPRQAEESLRRVMYLNCWGQG 92

[Close]

BLAST of HG10005340 vs. ExPASy TrEMBL
Match: A0A2N9HZV9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45844 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.0e-23
Identity = 55/92 (59.78%), Postives = 71/92 (77.17%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSYLNRV MAA VAV QG T+ GHKWKSG+KS++  ++ L SG +++DLRPLS ++GS+ 
Sbjct: 1  MSYLNRVWMAAGVAVVQGKTDQGHKWKSGIKSVQLRKQKLFSGNDTSDLRPLSGMIGSDF 60

Query: 61 PGVVRSCDVDERMAQTEDSLRRVMYLNCWGQG 93
           G + + D DER    ++SLRRVMYLNCWGQG
Sbjct: 61 QGFLGNSDADERPMHADESLRRVMYLNCWGQG 92

[Close]

BLAST of HG10005340 vs. ExPASy TrEMBL
Match: A0A6A1VB48 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G020117 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.5e-22
Identity = 56/92 (60.87%), Postives = 70/92 (76.09%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSSLVGSEG 60
          MSY+NRV MAASVAV QGH + G K KSG+ SL+ GRR   SG +S+D+RPLS ++GS+ 
Sbjct: 1  MSYINRVWMAASVAVVQGHRDQGCKLKSGVDSLQHGRRKFFSGNDSSDIRPLSGMMGSDL 60

Query: 61 PGVVRSCDVDERMAQTEDSLRRVMYLNCWGQG 93
           G + + D DER  Q ++SLRRVMYLNCWGQG
Sbjct: 61 DGFLGNTDSDERRRQADESLRRVMYLNCWGQG 92

[Close]

BLAST of HG10005340 vs. TAIR 10
Match: AT4G28240.1 (Wound-responsive family protein )

HSP 1 Score: 68.2 bits (165), Expect = 4.0e-12
Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 1  MSYLNRVGMAASVAVAQGHTEIGHKWKSGLKSLRQGRRLLSSGENSADLRPLSS--LVGS 60
          MSYLN+V MAAS    QG+ + G K KSGL S  + +R LSS     DLRPL++  L G 
Sbjct: 1  MSYLNKVWMAASFVAVQGNADHGVKLKSGLTSAHRLQRRLSS-----DLRPLAAADLTGD 60

Query: 61 EGPGVVRSCDVDERMAQTEDSLRRVMYLNCWGQG 93
            P   R        +  ++SLR+VMYLNCW QG
Sbjct: 61 SLPSEERR---RTSSSTPDESLRQVMYLNCWAQG 86

The following BLAST results are available for this feature:

BLAST of HG10005340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8645762.1	1.7e-41	95.65	hypothetical protein Csa_020269 [Cucumis sativus]	[more]
KAA0031600.1	1.7e-41	95.65	wound-responsive family protein [Cucumis melo var. makuwa] >TYK07052.1 wound-res...	[more]
KAG7011951.1	2.3e-41	95.65	hypothetical protein SDJN02_26859, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6572339.1	5.1e-41	94.57	hypothetical protein SDJN03_29067, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6589197.1	9.9e-37	86.96	hypothetical protein SDJN03_17762, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of HG10005340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10005340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLJ2	8.4e-42	95.65	Wound-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A0A0K6Z3	8.4e-42	95.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G046690 PE=4 SV=1	[more]
A0A5N6RB28	4.6e-24	64.13	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_014541 PE=4 SV=1	[more]
A0A2N9HZV9	3.0e-23	59.78	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS45844 PE=4 SV=1	[more]
A0A6A1VB48	2.5e-22	60.87	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G020117 PE=4 SV=1	[more]

BLAST of HG10005340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28240.1	4.0e-12	46.81	Wound-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 9..91 e-value: 8.3E-17 score: 62.0
IPR022251	Protein of unknown function wound-induced	PANTHER	PTHR33090	DUF3774 DOMAIN PROTEIN-RELATED	coord: 1..92
None	No IPR available	PANTHER	PTHR33090:SF38	DUF3774 DOMAIN PROTEIN	coord: 1..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10005340.1	HG10005340.1	mRNA