HG10004489 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004489
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Protein CutA
Location	Chr08: 17584916 .. 17588293 (+)
RNA-Seq Expression	HG10004489
Synteny	HG10004489

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTCACTCTCTGCAGCAGAGTTGTGACTCCATTGACATCGTCGTTTGCGTTACGACGTCGTTTACCTCTGGTTGGTGCGTTTTGCGTACTGAGCTTCGGAATCACCAATCTCTTAGTCTCCAAAACGGGTTCGGCTCTGTCTCTGCCTTTCGCTCCTCTCTTGAGGTACTTCTTTTCGCTTCCTTGCTTTCTTTCTTGATCAATTTCTTCTACGACTGTTTCTTTCTGTGAATTTGCTTTAGTTACTGGTTAATTTGTTTAGGTTATTAGTTTGATCCGTATTCGTGTTGGTTTGCTAATGGAAAAACTATGTCAATCGAAGTTTGCTGGTCAAGGACCAGCGAGGAACGTACATTTGATAAAAATGGAAGGGAGTAGTGCTGCAGTGCCTAGCATTGTTGTTTATGTCACCGTTCCTAACAGGGAAGCAGGTTCTCTTTTATCTATCTGCTCTAGAAGTCTCGCGCTCTTTGTGGTTTTGAATTCATTGATCATTTCCTGGTATTTTGAGCATGTGAACAAACTATAATCGGATTAGAATTGATATTTTTAGTAGCTATATTTTATTTCATTTTTTGAGGTTTCCAGTATCTTGTGTACGGAAAAACTTGGTTTCTCTTTTATTAATCTAGTGACCAATGAATCGGGCTCTTCTAGCAGCGGTATATACACTTTGTTTGATAGTAACCTAGACCATATTGATCAAGTAGTATGGGAAATTGGGAATTTACGATATGGTTTCAGCATTTTACTTGTTATGCTAGTCACGTCTTTACTGTAAGGAGAGTTTTTGGAGGAAACTTATGTTGATGGTGTTGAGTGTTGATAGGATCATCTTGATTATTAGTTAGATACATATACTTGGCGCATTGACTAATAATTACCAGACTCGATAAGCAAATGATGGATTATATTATAACTCAAGAAATGCTCTAATGTTATTATATTGGATATACTATTGTTGAATATGTAGCATGTGTTCCTACTCCTAGCATACTCACTTGGATGATTAATGTTCTGAGATAGTAAGGGCCTATTTGGTATGTTATATGTTTTCAAATTCACCAAGCTAAATGGATTCAACGAAGATTTGTTTGATATATAATAAGTTATGTCTTACTGTAAAATAATATTTATACAAAATTTTGGACATAAAACATGTTTCATAAATTAATTAGTAATAATTGAGGTACGACCTAATATTTAGTTGGTAACTAAGTAGAACTATGTTTTATAAATATATTATAACACATTTTCTCCAAATTTTAAAATTGGGATCCAATTGCAAAACCTGTTACCAAATACATAATAAAAAAGATTGAAAACATGAAATACCCCCCCCCCCCCCCCCCCCCCCAAAAAAAAAAATTGAATTTTTGTTTTATATCACCCAACATGTCCTAAGCTTTTGGAAAGGTTACCCGAGAGTACAGAATTGCTACGTTTTTTGCTACCCCTACAAAAAATTTAACAAATTTGTATACATTTTTGGGGGGCATGAGGCCATTTGTTTTCGTTGTTGTTATTGTTATTATTGTTTTTTTTTGTTATTTCAGTTTCAACTTCTTTGTTTCCCTTTTAGATCTGTGCTAACAGAACTAGTCCGATCCAATGTTTTGTATTTCAATTGCATTAGGTTACCTTGTTGTTTCTGTTGTGTCCACGTACATTTATTTATTTTTCAAAATGTAAATGATATATCTAACCTTGTACTTAAGTATATAGCAAGCATTGGATTGATGTTGCCCAAGCTTAAGTATAGTGTGTTTCATAAGACTCAGCGTTGGATTCCGTACTATGGGATTTACTTCTCTTTAGTAGATGTTATGTTTCTAATCTCACTCATTCACGTTATTTCTGCAGGTAAGAAACTGGCTGAAAGCATTGTCAAAGAAAAACTTGCTGCTTGTGTTAACATAGTACCTGGTATGTGCATCTTCTCAACCTCTGCTCGTCATCTTAATGTGACAGAATGCATTGCTCACGGTTTGGAAAAGATATTATGTCAACAATATTTATAATCCATGCTTGCAGAACATCTGATATTCTCGTTTAAGTTTTCAATGCATATCAACAAAGTTGCTTCTAACTATTTAAAACCTTAAATTGAAGCTTACTGGATCTTCCCTGTAACATTTCATTGCTGTTTTTTAGTGAAGGAAAGTCGTTAGAAATAGTTACTTGTCAGTTGGGAACAAAAGAAAATTTCTTTTGACCCGTTGACTCTTTAGATCTTGTGATGTCACAAACAGAAGTGATGCTTCAAGATGCTCCACATCCCTGTTTATTGTTCAATTTCAAACCACTGAATTCTTTTTCTTTTAGAGATTACTTTTCATTTTCTTATGTGAATATGAATTCTCAGACTTTTAAGTTCTAATGAATACTTTACAAATGCAGGCATAGAATCTGTTTACCAGTGGAAGGGAGAGGTATGGTTCTCATTTTCATAAATTGATATATAGTTATCACGAACAAAAAGAACTATAGGCTTTCTGTTTCTGGTTGACACAGATCCAGACAGACCCTGAGGAACTTCTGATTATTAAGACCAGGCAATCACTTCTGGGAGCACTGACAGATCATGTAAAGGCAAATCACCCATACGAGTAAGCCTAATATTCATTATTTGTTTTTGTCTGTTTTTTGTCTTCCGTTTTGTTTTGTTTCGGGTTTGTTAGTTTTTTGGGTGCATGTGTTTTTATTTTTCAATATTGGGGGAAGAATGGAGCGGAAGGGAAACTCAATAGAGTTGTGAATTGTGAACGGTTTCGCTTATGAGCTAGACATTTAGGGGGCATGTGGGGCAAGGAGTGGAGGTGTGAAGTCCCGAGTCCATAGTGTAAGGAGTTAATAAGGTATAAATTAATTGATGTTTTTTAGTAGTGGGATCCACGAACTCCTTGGGTCAAACAAGGAGTGGAGTTCACAACTCCTTACTTCCCAACTCTTTGGACCAAACGCCCCCTTAAGGTTTTTTTGGACGATATTTTTATTTTGTTAACCATATCCATTTGCTTTTTTTCCTGATTTACTCGTGTACTTTCAGGAATGTATTTCCAATCTTAGCTAAAATTTGAAACCTAGTTAAAAAATAGTTTTTAAAACTTTATTTTTATCATTGAAATTAGACTAAATTTGTAGTATCTTTGGAGTGAAAAACCAAACGAAGAGCTGCATAAGTAGCAGAATCCCCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAAAAAAGAAACCATTAAAAGCCAAATTTTGGCCTCTCCAAGGATTTACCTCCATTTTTTATGCAGGGTGCCTGAAGTTATTGCTTTGCCTATCAATGGTGGCAGCCTCGAGTACCTAGAGTGGATCAAGAGCAGCACAAAGGACTGA

mRNA sequence

ATGGCTTTCACTCTCTGCAGCAGAGTTGTGACTCCATTGACATCGTCGTTTGCGTTACGACGTCGTTTACCTCTGGTTGGTGCGTTTTGCGTACTGAGCTTCGGAATCACCAATCTCTTAGTCTCCAAAACGGGTTCGGCTCTGTCTCTGCCTTTCGCTCCTCTCTTGAGTTTGATCCGTATTCGTGTTGGTTTGCTAATGGAAAAACTATGTCAATCGAAGTTTGCTGGTCAAGGACCAGCGAGGAACGTACATTTGATAAAAATGGAAGGGAGTAGTGCTGCAGTGCCTAGCATTGTTGTTTATGTCACCGTTCCTAACAGGGAAGCAGGTAAGAAACTGGCTGAAAGCATTGTCAAAGAAAAACTTGCTGCTTGTGTTAACATAGTACCTGGCATAGAATCTGTTTACCAGTGGAAGGGAGAGATCCAGACAGACCCTGAGGAACTTCTGATTATTAAGACCAGGCAATCACTTCTGGGAGCACTGACAGATCATGTAAAGGCAAATCACCCATACGAGGTGCCTGAAGTTATTGCTTTGCCTATCAATGGTGGCAGCCTCGAGTACCTAGAGTGGATCAAGAGCAGCACAAAGGACTGA

Coding sequence (CDS)

ATGGCTTTCACTCTCTGCAGCAGAGTTGTGACTCCATTGACATCGTCGTTTGCGTTACGACGTCGTTTACCTCTGGTTGGTGCGTTTTGCGTACTGAGCTTCGGAATCACCAATCTCTTAGTCTCCAAAACGGGTTCGGCTCTGTCTCTGCCTTTCGCTCCTCTCTTGAGTTTGATCCGTATTCGTGTTGGTTTGCTAATGGAAAAACTATGTCAATCGAAGTTTGCTGGTCAAGGACCAGCGAGGAACGTACATTTGATAAAAATGGAAGGGAGTAGTGCTGCAGTGCCTAGCATTGTTGTTTATGTCACCGTTCCTAACAGGGAAGCAGGTAAGAAACTGGCTGAAAGCATTGTCAAAGAAAAACTTGCTGCTTGTGTTAACATAGTACCTGGCATAGAATCTGTTTACCAGTGGAAGGGAGAGATCCAGACAGACCCTGAGGAACTTCTGATTATTAAGACCAGGCAATCACTTCTGGGAGCACTGACAGATCATGTAAAGGCAAATCACCCATACGAGGTGCCTGAAGTTATTGCTTTGCCTATCAATGGTGGCAGCCTCGAGTACCTAGAGTGGATCAAGAGCAGCACAAAGGACTGA

Protein sequence

MAFTLCSRVVTPLTSSFALRRRLPLVGAFCVLSFGITNLLVSKTGSALSLPFAPLLSLIRIRVGLLMEKLCQSKFAGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVKEKLAACVNIVPGIESVYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSLEYLEWIKSSTKD

Homology

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BLAST of HG10004489 vs. NCBI nr
Match: XP_004152609.1 (protein CutA, chloroplastic [Cucumis sativus] >KGN62736.1 hypothetical protein Csa_022362 [Cucumis sativus])

HSP 1 Score: 332.0 bits (850), Expect = 3.5e-87
Identity = 174/200 (87.00%), Postives = 178/200 (89.00%), Query Frame = 0


Query: 1   MAFTLCSRVVTPLTSSFALRRRLPLVGAFCVLSFGITNLLVSKTGSALSLPFAPLLSLIR 60
           MAFTL SR  TPL +SFALRRRLPLVGAFCVLSFGI+NL VSKTGSALSLPF PLL    
Sbjct: 1   MAFTLSSRAATPLITSFALRRRLPLVGAFCVLSFGISNLFVSKTGSALSLPFVPLL---- 60

Query: 61  IRVGLLMEKLCQSKFAGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK 120
                      +SK AGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK
Sbjct: 61  -----------RSKLAGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK 120

Query: 121 EKLAACVNIVPGIESVYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA 180
           EKLAACVNIVPGIESVYQWKGEIQ+DPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA
Sbjct: 121 EKLAACVNIVPGIESVYQWKGEIQSDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA 180

Query: 181 LPINGGSLEYLEWIKSSTKD 201
           LPINGGSLEYLEWIKSSTKD
Sbjct: 181 LPINGGSLEYLEWIKSSTKD 185

[Close]

BLAST of HG10004489 vs. NCBI nr
Match: XP_038886215.1 (protein CutA, chloroplastic [Benincasa hispida] >XP_038886216.1 protein CutA, chloroplastic [Benincasa hispida])

HSP 1 Score: 331.6 bits (849), Expect = 4.6e-87
Identity = 173/200 (86.50%), Postives = 176/200 (88.00%), Query Frame = 0


Query: 1   MAFTLCSRVVTPLTSSFALRRRLPLVGAFCVLSFGITNLLVSKTGSALSLPFAPLLSLIR 60
           MA T CSR  +PL SSF LRRRLPLVGAFCVLSFGI+NL VSKTGSALSLPF PLL    
Sbjct: 1   MALTFCSRATSPLISSFVLRRRLPLVGAFCVLSFGISNLFVSKTGSALSLPFVPLL---- 60

Query: 61  IRVGLLMEKLCQSKFAGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK 120
                      +SKFA QGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK
Sbjct: 61  -----------RSKFASQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK 120

Query: 121 EKLAACVNIVPGIESVYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA 180
           EKLAACVNIVPGIESVYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA
Sbjct: 121 EKLAACVNIVPGIESVYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA 180

Query: 181 LPINGGSLEYLEWIKSSTKD 201
           LPINGGSLEYLEWIKSSTKD
Sbjct: 181 LPINGGSLEYLEWIKSSTKD 185

[Close]

BLAST of HG10004489 vs. NCBI nr
Match: XP_008444893.1 (PREDICTED: protein CutA, chloroplastic [Cucumis melo])

HSP 1 Score: 331.3 bits (848), Expect = 5.9e-87
Identity = 173/200 (86.50%), Postives = 177/200 (88.50%), Query Frame = 0


Query: 1   MAFTLCSRVVTPLTSSFALRRRLPLVGAFCVLSFGITNLLVSKTGSALSLPFAPLLSLIR 60
           MAFTL SR  TPL S FALRRRLPLVGAFCVLSFGI+NL VSKTGSALS+PF PLL    
Sbjct: 1   MAFTLSSRAATPLISCFALRRRLPLVGAFCVLSFGISNLFVSKTGSALSVPFVPLL---- 60

Query: 61  IRVGLLMEKLCQSKFAGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK 120
                      +SK AGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK
Sbjct: 61  -----------RSKLAGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK 120

Query: 121 EKLAACVNIVPGIESVYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA 180
           EKLAACVNIVPGIES+YQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA
Sbjct: 121 EKLAACVNIVPGIESIYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA 180

Query: 181 LPINGGSLEYLEWIKSSTKD 201
           LPINGGSLEYLEWIKSSTKD
Sbjct: 181 LPINGGSLEYLEWIKSSTKD 185

[Close]

BLAST of HG10004489 vs. NCBI nr
Match: KAA0065110.1 (protein CutA [Cucumis melo var. makuwa])

HSP 1 Score: 328.9 bits (842), Expect = 3.0e-86
Identity = 173/200 (86.50%), Postives = 176/200 (88.00%), Query Frame = 0


Query: 1   MAFTLCSRVVTPLTSSFALRRRLPLVGAFCVLSFGITNLLVSKTGSALSLPFAPLLSLIR 60
           MAFTL SR  TPL S FALRRRLPLVGAFCVLSFGI+NL VSKTGSALSLPF PLL    
Sbjct: 1   MAFTLSSRAATPLISCFALRRRLPLVGAFCVLSFGISNLFVSKTGSALSLPFVPLL---- 60

Query: 61  IRVGLLMEKLCQSKFAGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK 120
                      +SK AGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK
Sbjct: 61  -----------RSKLAGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK 120

Query: 121 EKLAACVNIVPGIESVYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA 180
           EKLAACVNIVPGIES+YQWKGEIQTDPEELLIIKTRQSLLGALTDHVKA HPYEVPEVIA
Sbjct: 121 EKLAACVNIVPGIESIYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKAIHPYEVPEVIA 180

Query: 181 LPINGGSLEYLEWIKSSTKD 201
           LPINGGSLEYLEWIKSSTKD
Sbjct: 181 LPINGGSLEYLEWIKSSTKD 185

[Close]

BLAST of HG10004489 vs. NCBI nr
Match: XP_023545579.1 (protein CutA, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 324.7 bits (831), Expect = 5.6e-85
Identity = 170/200 (85.00%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1   MAFTLCSRVVTPLTSSFALRRRLPLVGAFCVLSFGITNLLVSKTGSALSLPFAPLLSLIR 60
           MAFTLCSRV TPL S   LRRRLPLVGAFCVLSFG +NL VSKTGSALSLPFAPLL    
Sbjct: 1   MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLSFGFSNLFVSKTGSALSLPFAPLL---- 60

Query: 61  IRVGLLMEKLCQSKFAGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK 120
                      +S F  QGPARNVHLIKMEG+SAAVPSIVVYVTVPNREAGKKLAESIVK
Sbjct: 61  -----------RSTFGSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVK 120

Query: 121 EKLAACVNIVPGIESVYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA 180
           EKLAACVNIVPGIESVYQWKGEIQTD EELLIIKTRQSLLGALTDHVKANHPYEVPEVIA
Sbjct: 121 EKLAACVNIVPGIESVYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA 180

Query: 181 LPINGGSLEYLEWIKSSTKD 201
           LPINGGS+EYLEWIKSSTKD
Sbjct: 181 LPINGGSMEYLEWIKSSTKD 185

[Close]

BLAST of HG10004489 vs. ExPASy Swiss-Prot
Match: P93009 (Protein CutA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CUTA PE=1 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.4e-51
Identity = 116/200 (58.00%), Postives = 143/200 (71.50%), Query Frame = 0


Query: 5   LCSRVVTPLTSSFALRRRLPLVGAFCVLS-FGITNLLVS---KTGSALSLPFAPLLSLIR 64
           + S + T L++    RR  P+VGAFCVLS   I++L  S   K+G A S    PLL    
Sbjct: 1   MASSLTTRLSAVIGSRRSFPIVGAFCVLSTLSISSLSSSSPFKSGCAQSFSVVPLL---- 60

Query: 65  IRVGLLMEKLCQSKFAGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK 124
                      +SKF+ +  + +   I+ME SS  VPSIVVYVTVPNREAGKKLA SIV+
Sbjct: 61  -----------RSKFSSKAFSSS---IRMEESSKTVPSIVVYVTVPNREAGKKLANSIVQ 120

Query: 125 EKLAACVNIVPGIESVYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA 184
           EKLAACVNIVPGIESVY+W+G++Q+D EELLIIKTRQSLL  LT+HV ANH Y+VPEVIA
Sbjct: 121 EKLAACVNIVPGIESVYEWEGKVQSDSEELLIIKTRQSLLEPLTEHVNANHEYDVPEVIA 180

Query: 185 LPINGGSLEYLEWIKSSTKD 201
           LPI GGS +YLEW+K+ST++
Sbjct: 181 LPITGGSDKYLEWLKNSTRN 182

[Close]

BLAST of HG10004489 vs. ExPASy Swiss-Prot
Match: Q109R6 (Protein CutA 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CUTA1 PE=1 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.1e-46
Identity = 95/155 (61.29%), Postives = 118/155 (76.13%), Query Frame = 0


Query: 46  SALSLPFAPLLSLIRIRVGLLMEKLCQSKFAGQGPARNVHLIKMEGSSAAVPSIVVYVTV 105
           +A +   +PLL   R  +   +  L    FAG     +    +ME +S  VPSIVVYVTV
Sbjct: 22  AAAAAGLSPLLLRRRAPIAGALLFLSLGAFAGVRSLSSSASARMESTSTTVPSIVVYVTV 81

Query: 106 PNREAGKKLAESIVKEKLAACVNIVPGIESVYQWKGEIQTDPEELLIIKTRQSLLGALTD 165
           PN+EAGK+LA SI+ EKLAACVNIVPGIESVY W+G++QTD EELLIIKTR+SLL ALT+
Sbjct: 82  PNKEAGKRLAGSIISEKLAACVNIVPGIESVYWWEGKVQTDAEELLIIKTRESLLDALTE 141

Query: 166 HVKANHPYEVPEVIALPINGGSLEYLEWIKSSTKD 201
           HVKANH Y+VPEVIALPI GG+L+YLEW+K+ST++
Sbjct: 142 HVKANHEYDVPEVIALPIKGGNLKYLEWLKNSTRE 176

[Close]

BLAST of HG10004489 vs. ExPASy Swiss-Prot
Match: O60888 (Protein CutA OS=Homo sapiens OX=9606 GN=CUTA PE=1 SV=2)

HSP 1 Score: 123.6 bits (309), Expect = 2.5e-27
Identity = 68/171 (39.77%), Postives = 105/171 (61.40%), Query Frame = 0


Query: 31  VLSFGITNLLVSKTGSALSLPFAPLLSLIRIRVGLLMEKLCQSKFAGQGPARNVHLIKME 90
           VL  G+ +LL+S       LP A  L        LL+ ++  +  +G  P +       +
Sbjct: 9   VLLGGVASLLLSFVWMPALLPVASRL--------LLLPRVLLTMASGSPPTQPSP--ASD 68

Query: 91  GSSAAVPSIV--VYVTVPNREAGKKLAESIVKEKLAACVNIVPGIESVYQWKGEIQTDPE 150
             S  VP  V   +VT PN +  K++A ++V+++LAACVN++P I S+Y+WKG+I+ D E
Sbjct: 69  SGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIEEDSE 128

Query: 151 ELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSLEYLEWIKSSTK 200
            L++IKT+ SL+ ALTD V++ HPYEV EVIALP+  G+  YL+W++  T+
Sbjct: 129 VLMMIKTQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNFPYLQWVRQVTE 169

[Close]

BLAST of HG10004489 vs. ExPASy Swiss-Prot
Match: P69678 (Protein CutA OS=Bos taurus OX=9913 GN=CUTA PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.0e-25
Identity = 70/165 (42.42%), Postives = 102/165 (61.82%), Query Frame = 0


Query: 37  TNLLVSKTGSALSLPFAPLLSLIRIRVGLLMEKLCQSKFAGQGPARNVHLIKMEGSSAAV 96
           T LL       LSL + P L     R+ LL+ +   S  +G  PA+          SA V
Sbjct: 8   TFLLGGGAALLLSLFWMPTLLPAASRL-LLLPRALLSMASGSPPAQP----SSSSRSAYV 67

Query: 97  PSIV--VYVTVPNREAGKKLAESIVKEKLAACVNIVPGIESVYQWKGEIQTDPEELLIIK 156
           P  V   +VT PN +  K++A ++V+++L ACVN+VP I S+Y+WKG+I+ D E L++IK
Sbjct: 68  PGSVSAAFVTCPNEKVAKEIARAVVEKRL-ACVNLVPQITSIYEWKGKIEEDSEVLMMIK 127

Query: 157 TRQSLLGALTDHVKANHPYEVPEVIALPINGGSLEYLEWIKSSTK 200
           T+ SL+ ALTD V++ HPYEV EVIALP+  G+  YL+W++  T+
Sbjct: 128 TQSSLVPALTDFVRSVHPYEVAEVIALPVEQGNSPYLQWVRQVTE 166

[Close]

BLAST of HG10004489 vs. ExPASy Swiss-Prot
Match: Q6MGD0 (Protein CutA OS=Rattus norvegicus OX=10116 GN=Cuta PE=1 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 1.0e-25
Identity = 70/175 (40.00%), Postives = 102/175 (58.29%), Query Frame = 0


Query: 27  GAFCVLSFGITNLLVSKTGSALSLPFAPLLSLIRIRVGLLMEKLCQSKFAGQGPARNVHL 86
           GA  VL  G   LL+S       LP A  L        LL+ +   S  +G  P++    
Sbjct: 5   GALGVLLGGGATLLLSFLCMPALLPVASRL--------LLLPRALLSMASGSPPSQP--- 64

Query: 87  IKMEGSSAAVPSIV--VYVTVPNREAGKKLAESIVKEKLAACVNIVPGIESVYQWKGEIQ 146
                 S  VP  V   +VT PN +  K++A ++V+++LAACVN++P I S+Y+WKG+I+
Sbjct: 65  -SPASGSGYVPGSVSAAFVTCPNEKVAKEIARAVVEKRLAACVNLIPQITSIYEWKGKIE 124

Query: 147 TDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIALPINGGSLEYLEWIKSSTK 200
            D E L++IKT+ SL+ ALT+ V++ HPYEV EVIALP+  G+  YL W+   T+
Sbjct: 125 EDSEVLMMIKTQSSLVPALTEFVRSVHPYEVAEVIALPVEQGNPPYLHWVHQVTE 167

[Close]

BLAST of HG10004489 vs. ExPASy TrEMBL
Match: A0A0A0LRU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370360 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.7e-87
Identity = 174/200 (87.00%), Postives = 178/200 (89.00%), Query Frame = 0


Query: 1   MAFTLCSRVVTPLTSSFALRRRLPLVGAFCVLSFGITNLLVSKTGSALSLPFAPLLSLIR 60
           MAFTL SR  TPL +SFALRRRLPLVGAFCVLSFGI+NL VSKTGSALSLPF PLL    
Sbjct: 1   MAFTLSSRAATPLITSFALRRRLPLVGAFCVLSFGISNLFVSKTGSALSLPFVPLL---- 60

Query: 61  IRVGLLMEKLCQSKFAGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK 120
                      +SK AGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK
Sbjct: 61  -----------RSKLAGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK 120

Query: 121 EKLAACVNIVPGIESVYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA 180
           EKLAACVNIVPGIESVYQWKGEIQ+DPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA
Sbjct: 121 EKLAACVNIVPGIESVYQWKGEIQSDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA 180

Query: 181 LPINGGSLEYLEWIKSSTKD 201
           LPINGGSLEYLEWIKSSTKD
Sbjct: 181 LPINGGSLEYLEWIKSSTKD 185

[Close]

BLAST of HG10004489 vs. ExPASy TrEMBL
Match: A0A1S3BBF3 (protein CutA, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488107 PE=3 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 2.9e-87
Identity = 173/200 (86.50%), Postives = 177/200 (88.50%), Query Frame = 0


Query: 1   MAFTLCSRVVTPLTSSFALRRRLPLVGAFCVLSFGITNLLVSKTGSALSLPFAPLLSLIR 60
           MAFTL SR  TPL S FALRRRLPLVGAFCVLSFGI+NL VSKTGSALS+PF PLL    
Sbjct: 1   MAFTLSSRAATPLISCFALRRRLPLVGAFCVLSFGISNLFVSKTGSALSVPFVPLL---- 60

Query: 61  IRVGLLMEKLCQSKFAGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK 120
                      +SK AGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK
Sbjct: 61  -----------RSKLAGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK 120

Query: 121 EKLAACVNIVPGIESVYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA 180
           EKLAACVNIVPGIES+YQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA
Sbjct: 121 EKLAACVNIVPGIESIYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA 180

Query: 181 LPINGGSLEYLEWIKSSTKD 201
           LPINGGSLEYLEWIKSSTKD
Sbjct: 181 LPINGGSLEYLEWIKSSTKD 185

[Close]

BLAST of HG10004489 vs. ExPASy TrEMBL
Match: A0A5A7VD29 (Protein CutA OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004450 PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.4e-86
Identity = 173/200 (86.50%), Postives = 176/200 (88.00%), Query Frame = 0


Query: 1   MAFTLCSRVVTPLTSSFALRRRLPLVGAFCVLSFGITNLLVSKTGSALSLPFAPLLSLIR 60
           MAFTL SR  TPL S FALRRRLPLVGAFCVLSFGI+NL VSKTGSALSLPF PLL    
Sbjct: 1   MAFTLSSRAATPLISCFALRRRLPLVGAFCVLSFGISNLFVSKTGSALSLPFVPLL---- 60

Query: 61  IRVGLLMEKLCQSKFAGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK 120
                      +SK AGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK
Sbjct: 61  -----------RSKLAGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK 120

Query: 121 EKLAACVNIVPGIESVYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA 180
           EKLAACVNIVPGIES+YQWKGEIQTDPEELLIIKTRQSLLGALTDHVKA HPYEVPEVIA
Sbjct: 121 EKLAACVNIVPGIESIYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKAIHPYEVPEVIA 180

Query: 181 LPINGGSLEYLEWIKSSTKD 201
           LPINGGSLEYLEWIKSSTKD
Sbjct: 181 LPINGGSLEYLEWIKSSTKD 185

[Close]

BLAST of HG10004489 vs. ExPASy TrEMBL
Match: A0A6J1K4I7 (protein CutA, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111492224 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 7.8e-85
Identity = 169/200 (84.50%), Postives = 174/200 (87.00%), Query Frame = 0


Query: 1   MAFTLCSRVVTPLTSSFALRRRLPLVGAFCVLSFGITNLLVSKTGSALSLPFAPLLSLIR 60
           MAFTLCSRV TPL S   LRRRLPLVGAFCVLSFG +NL VS+TGSALSLPFAPLL    
Sbjct: 1   MAFTLCSRVATPLLSPSVLRRRLPLVGAFCVLSFGFSNLFVSRTGSALSLPFAPLL---- 60

Query: 61  IRVGLLMEKLCQSKFAGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK 120
                      +S F  QGPARNVHLIKMEG+SAAVPSIVVYVTVPNREAGKKLAESIVK
Sbjct: 61  -----------RSTFGSQGPARNVHLIKMEGNSAAVPSIVVYVTVPNREAGKKLAESIVK 120

Query: 121 EKLAACVNIVPGIESVYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA 180
           EKLAACVNIVPGIESVYQWKGEIQTD EELLIIKTRQSLLGALTDHVKANHPYEVPEVIA
Sbjct: 121 EKLAACVNIVPGIESVYQWKGEIQTDAEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA 180

Query: 181 LPINGGSLEYLEWIKSSTKD 201
           LPINGGS+EYLEWIKSSTKD
Sbjct: 181 LPINGGSVEYLEWIKSSTKD 185

[Close]

BLAST of HG10004489 vs. ExPASy TrEMBL
Match: A0A6J1BS17 (protein CutA, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005035 PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 3.3e-83
Identity = 164/200 (82.00%), Postives = 175/200 (87.50%), Query Frame = 0


Query: 1   MAFTLCSRVVTPLTSSFALRRRLPLVGAFCVLSFGITNLLVSKTGSALSLPFAPLLSLIR 60
           MAFTLCSRV  PL SS ALRRRLPLVGAFCVLSFGI+++ +S+TGSALSLPFAPLL    
Sbjct: 1   MAFTLCSRVSAPLLSSSALRRRLPLVGAFCVLSFGISHIFISRTGSALSLPFAPLL---- 60

Query: 61  IRVGLLMEKLCQSKFAGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK 120
                      +SKF GQGPARNVH ++ME +SAAVPSIVVYVTVPNREAGKKLAESIVK
Sbjct: 61  -----------RSKFGGQGPARNVHFVRMEATSAAVPSIVVYVTVPNREAGKKLAESIVK 120

Query: 121 EKLAACVNIVPGIESVYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA 180
           EKLAACVNIVPGIESVYQWKGEIQTDPEELLIIKTRQSLLG+LTDHVKANHPYEVPEVIA
Sbjct: 121 EKLAACVNIVPGIESVYQWKGEIQTDPEELLIIKTRQSLLGSLTDHVKANHPYEVPEVIA 180

Query: 181 LPINGGSLEYLEWIKSSTKD 201
           L I GGSLEYL+WIKSSTKD
Sbjct: 181 LRITGGSLEYLDWIKSSTKD 185

[Close]

BLAST of HG10004489 vs. TAIR 10
Match: AT2G33740.2 (Nitrogen regulatory PII-like, alpha/beta )

HSP 1 Score: 204.1 bits (518), Expect = 1.0e-52
Identity = 116/200 (58.00%), Postives = 143/200 (71.50%), Query Frame = 0


Query: 5   LCSRVVTPLTSSFALRRRLPLVGAFCVLS-FGITNLLVS---KTGSALSLPFAPLLSLIR 64
           + S + T L++    RR  P+VGAFCVLS   I++L  S   K+G A S    PLL    
Sbjct: 1   MASSLTTRLSAVIGSRRSFPIVGAFCVLSTLSISSLSSSSPFKSGCAQSFSVVPLL---- 60

Query: 65  IRVGLLMEKLCQSKFAGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK 124
                      +SKF+ +  + +   I+ME SS  VPSIVVYVTVPNREAGKKLA SIV+
Sbjct: 61  -----------RSKFSSKAFSSS---IRMEESSKTVPSIVVYVTVPNREAGKKLANSIVQ 120

Query: 125 EKLAACVNIVPGIESVYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYEVPEVIA 184
           EKLAACVNIVPGIESVY+W+G++Q+D EELLIIKTRQSLL  LT+HV ANH Y+VPEVIA
Sbjct: 121 EKLAACVNIVPGIESVYEWEGKVQSDSEELLIIKTRQSLLEPLTEHVNANHEYDVPEVIA 180

Query: 185 LPINGGSLEYLEWIKSSTKD 201
           LPI GGS +YLEW+K+ST++
Sbjct: 181 LPITGGSDKYLEWLKNSTRN 182

[Close]

BLAST of HG10004489 vs. TAIR 10
Match: AT2G33740.1 (Nitrogen regulatory PII-like, alpha/beta )

HSP 1 Score: 164.1 bits (414), Expect = 1.2e-40
Identity = 98/174 (56.32%), Postives = 119/174 (68.39%), Query Frame = 0


Query: 5   LCSRVVTPLTSSFALRRRLPLVGAFCVLS-FGITNLLVS---KTGSALSLPFAPLLSLIR 64
           + S + T L++    RR  P+VGAFCVLS   I++L  S   K+G A S    PLL    
Sbjct: 1   MASSLTTRLSAVIGSRRSFPIVGAFCVLSTLSISSLSSSSPFKSGCAQSFSVVPLL---- 60

Query: 65  IRVGLLMEKLCQSKFAGQGPARNVHLIKMEGSSAAVPSIVVYVTVPNREAGKKLAESIVK 124
                      +SKF+ +  + +   I+ME SS  VPSIVVYVTVPNREAGKKLA SIV+
Sbjct: 61  -----------RSKFSSKAFSSS---IRMEESSKTVPSIVVYVTVPNREAGKKLANSIVQ 120

Query: 125 EKLAACVNIVPGIESVYQWKGEIQTDPEELLIIKTRQSLLGALTDHVKANHPYE 175
           EKLAACVNIVPGIESVY+W+G++Q+D EELLIIKTRQSLL  LT+HV ANH YE
Sbjct: 121 EKLAACVNIVPGIESVYEWEGKVQSDSEELLIIKTRQSLLEPLTEHVNANHEYE 156

The following BLAST results are available for this feature:

BLAST of HG10004489 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152609.1	3.5e-87	87.00	protein CutA, chloroplastic [Cucumis sativus] >KGN62736.1 hypothetical protein C...	[more]
XP_038886215.1	4.6e-87	86.50	protein CutA, chloroplastic [Benincasa hispida] >XP_038886216.1 protein CutA, ch...	[more]
XP_008444893.1	5.9e-87	86.50	PREDICTED: protein CutA, chloroplastic [Cucumis melo]	[more]
KAA0065110.1	3.0e-86	86.50	protein CutA [Cucumis melo var. makuwa]	[more]
XP_023545579.1	5.6e-85	85.00	protein CutA, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of HG10004489 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93009	1.4e-51	58.00	Protein CutA, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CUTA PE=1 SV=1	[more]
Q109R6	4.1e-46	61.29	Protein CutA 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CUTA1 ...	[more]
O60888	2.5e-27	39.77	Protein CutA OS=Homo sapiens OX=9606 GN=CUTA PE=1 SV=2	[more]
P69678	1.0e-25	42.42	Protein CutA OS=Bos taurus OX=9913 GN=CUTA PE=1 SV=1	[more]
Q6MGD0	1.0e-25	40.00	Protein CutA OS=Rattus norvegicus OX=10116 GN=Cuta PE=1 SV=2	[more]

BLAST of HG10004489 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRU0	1.7e-87	87.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G370360 PE=3 SV=1	[more]
A0A1S3BBF3	2.9e-87	86.50	protein CutA, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103488107 PE=3 SV=1	[more]
A0A5A7VD29	1.4e-86	86.50	Protein CutA OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G004450 P...	[more]
A0A6J1K4I7	7.8e-85	84.50	protein CutA, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111492224 PE=3 SV=...	[more]
A0A6J1BS17	3.3e-83	82.00	protein CutA, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111005035 PE=3 ...	[more]

BLAST of HG10004489 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G33740.2	1.0e-52	58.00	Nitrogen regulatory PII-like, alpha/beta	[more]
AT2G33740.1	1.2e-40	56.32	Nitrogen regulatory PII-like, alpha/beta	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015867	Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal	GENE3D	3.30.70.120		coord: 78..199 e-value: 2.2E-49 score: 167.9
IPR004323	Divalent ion tolerance protein, CutA	PFAM	PF03091	CutA1	coord: 99..196 e-value: 4.8E-38 score: 129.0
IPR004323	Divalent ion tolerance protein, CutA	PANTHER	PTHR23419	DIVALENT CATION TOLERANCE CUTA-RELATED	coord: 13..198
None	No IPR available	PANTHER	PTHR23419:SF8	FI09726P	coord: 13..198
IPR011322	Nitrogen regulatory PII-like, alpha/beta	SUPERFAMILY	54913	GlnB-like	coord: 98..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004489.1	HG10004489.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010038	response to metal ion
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005507	copper ion binding