HG10004196 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAATTCCATCCGGAAAATGGCAACCATGGATGGCCGAAGGAGCCCTCTTTGTGCGGTGGCGTGGCGGCGTATTGGAGCGGTGCGGCGGAGGGGCTCGAGCGGAGTCATTTGGAGGAGTTTAAACATATGGTGGCAGAATTTTGTCGCCCTATTGTACGACTTGGGGGCGAGAGCCTCACGATAGCGCAAGTTGCTGCCATTGCTGCTCGTGCCTCTGATGTTGTGGTGGAGCTGTCTGAGGAAGCTCGCCCTGGTGTAGAGGCGAGTAGTAGGTGGGTTGTTAAAAGCATGACTAATGGAACCGATAGTTATGGTGTTACGACTGGTTTTGGTTCTACGTCGCATCGAAGGACTGACCAAGGAGAAGCCCTTCAGAAAGAGCTCATTAGGTGGATTACTCCTTCTTAA ATGGAATTCCATCCGGAAAATGGCAACCATGGATGGCCGAAGGAGCCCTCTTTGTGCGGTGGCGTGGCGGCGTATTGGAGCGGTGCGGCGGAGGGGCTCGAGCGGAGTCATTTGGAGGAGTTTAAACATATGGTGGCAGAATTTTGTCGCCCTATTGTACGACTTGGGGGCGAGAGCCTCACGATAGCGCAAGTTGCTGCCATTGCTGCTCGTGCCTCTGATGTTGTGGTGGAGCTGTCTGAGGAAGCTCGCCCTGGTGTAGAGGCGAGTAGTAGGTGGGTTGTTAAAAGCATGACTAATGGAACCGATAGTTATGGTGTTACGACTGGTTTTGGTTCTACGTCGCATCGAAGGACTGACCAAGGAGAAGCCCTTCAGAAAGAGCTCATTAGGTGGATTACTCCTTCTTAA ATGGAATTCCATCCGGAAAATGGCAACCATGGATGGCCGAAGGAGCCCTCTTTGTGCGGTGGCGTGGCGGCGTATTGGAGCGGTGCGGCGGAGGGGCTCGAGCGGAGTCATTTGGAGGAGTTTAAACATATGGTGGCAGAATTTTGTCGCCCTATTGTACGACTTGGGGGCGAGAGCCTCACGATAGCGCAAGTTGCTGCCATTGCTGCTCGTGCCTCTGATGTTGTGGTGGAGCTGTCTGAGGAAGCTCGCCCTGGTGTAGAGGCGAGTAGTAGGTGGGTTGTTAAAAGCATGACTAATGGAACCGATAGTTATGGTGTTACGACTGGTTTTGGTTCTACGTCGCATCGAAGGACTGACCAAGGAGAAGCCCTTCAGAAAGAGCTCATTAGGTGGATTACTCCTTCTTAA MEFHPENGNHGWPKEPSLCGGVAAYWSGAAEGLERSHLEEFKHMVAEFCRPIVRLGGESLTIAQVAAIAARASDVVVELSEEARPGVEASSRWVVKSMTNGTDSYGVTTGFGSTSHRRTDQGEALQKELIRWITPS Homology
BLAST of HG10004196 vs. NCBI nr
Match: XP_008456500.1 (PREDICTED: phenylalanine ammonia-lyase G4 [Cucumis melo] >KAA0036480.1 phenylalanine ammonia-lyase G4 [Cucumis melo var. makuwa] >TYK00009.1 phenylalanine ammonia-lyase G4 [Cucumis melo var. makuwa]) HSP 1 Score: 232.6 bits (592), Expect = 2.0e-57 Identity = 119/134 (88.81%), Postives = 125/134 (93.28%), Query Frame = 0
BLAST of HG10004196 vs. NCBI nr
Match: XP_004149916.1 (phenylalanine ammonia-lyase G4 [Cucumis sativus] >KGN47834.1 hypothetical protein Csa_002790 [Cucumis sativus]) HSP 1 Score: 227.6 bits (579), Expect = 6.3e-56 Identity = 115/133 (86.47%), Postives = 122/133 (91.73%), Query Frame = 0
BLAST of HG10004196 vs. NCBI nr
Match: XP_038883983.1 (phenylalanine ammonia-lyase G4-like [Benincasa hispida]) HSP 1 Score: 213.8 bits (543), Expect = 9.4e-52 Identity = 108/128 (84.38%), Postives = 114/128 (89.06%), Query Frame = 0
BLAST of HG10004196 vs. NCBI nr
Match: KAG5515527.1 (hypothetical protein RHGRI_036534 [Rhododendron griersonianum]) HSP 1 Score: 164.1 bits (414), Expect = 8.5e-37 Identity = 90/134 (67.16%), Postives = 102/134 (76.12%), Query Frame = 0
BLAST of HG10004196 vs. NCBI nr
Match: QUP61928.1 (phenylalanine ammonia lyase [Rhododendron fortunei]) HSP 1 Score: 163.3 bits (412), Expect = 1.5e-36 Identity = 90/134 (67.16%), Postives = 101/134 (75.37%), Query Frame = 0
BLAST of HG10004196 vs. ExPASy Swiss-Prot
Match: P45726 (Phenylalanine ammonia-lyase OS=Camellia sinensis OX=4442 GN=PAL PE=2 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 9.8e-36 Identity = 78/118 (66.10%), Postives = 92/118 (77.97%), Query Frame = 0
BLAST of HG10004196 vs. ExPASy Swiss-Prot
Match: P27991 (Phenylalanine ammonia-lyase 1 OS=Glycine max OX=3847 GN=PAL1 PE=3 SV=1) HSP 1 Score: 149.4 bits (376), Expect = 2.9e-35 Identity = 75/108 (69.44%), Postives = 88/108 (81.48%), Query Frame = 0
BLAST of HG10004196 vs. ExPASy Swiss-Prot
Match: P14166 (Phenylalanine ammonia-lyase OS=Ipomoea batatas OX=4120 GN=PAL PE=2 SV=1) HSP 1 Score: 146.4 bits (368), Expect = 2.4e-34 Identity = 76/108 (70.37%), Postives = 88/108 (81.48%), Query Frame = 0
BLAST of HG10004196 vs. ExPASy Swiss-Prot
Match: O64963 (Phenylalanine ammonia-lyase 1 OS=Prunus avium OX=42229 GN=PAL1 PE=2 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 3.2e-34 Identity = 76/108 (70.37%), Postives = 89/108 (82.41%), Query Frame = 0
BLAST of HG10004196 vs. ExPASy Swiss-Prot
Match: O49835 (Phenylalanine ammonia-lyase 1 OS=Lithospermum erythrorhizon OX=34254 PE=2 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 4.1e-34 Identity = 80/133 (60.15%), Postives = 96/133 (72.18%), Query Frame = 0
BLAST of HG10004196 vs. ExPASy TrEMBL
Match: A0A5D3BPF6 (Phenylalanine ammonia-lyase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00540 PE=3 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 9.5e-58 Identity = 119/134 (88.81%), Postives = 125/134 (93.28%), Query Frame = 0
BLAST of HG10004196 vs. ExPASy TrEMBL
Match: A0A1S3C3H3 (Phenylalanine ammonia-lyase OS=Cucumis melo OX=3656 GN=LOC103496433 PE=3 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 9.5e-58 Identity = 119/134 (88.81%), Postives = 125/134 (93.28%), Query Frame = 0
BLAST of HG10004196 vs. ExPASy TrEMBL
Match: A0A0A0KG52 (Phenylalanine ammonia-lyase OS=Cucumis sativus OX=3659 GN=Csa_6G405960 PE=3 SV=1) HSP 1 Score: 227.6 bits (579), Expect = 3.0e-56 Identity = 115/133 (86.47%), Postives = 122/133 (91.73%), Query Frame = 0
BLAST of HG10004196 vs. ExPASy TrEMBL
Match: A0A6A4LKH3 (Phenylalanine ammonia-lyase (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_06849 PE=3 SV=1) HSP 1 Score: 163.3 bits (412), Expect = 7.1e-37 Identity = 90/134 (67.16%), Postives = 101/134 (75.37%), Query Frame = 0
BLAST of HG10004196 vs. ExPASy TrEMBL
Match: A5BPT8 (Phenylalanine ammonia-lyase OS=Vitis vinifera OX=29760 GN=VIT_06s0004g02620 PE=3 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 1.3e-35 Identity = 89/137 (64.96%), Postives = 102/137 (74.45%), Query Frame = 0
BLAST of HG10004196 vs. TAIR 10
Match: AT2G37040.1 (PHE ammonia lyase 1 ) HSP 1 Score: 142.5 bits (358), Expect = 2.5e-34 Identity = 79/145 (54.48%), Postives = 97/145 (66.90%), Query Frame = 0
BLAST of HG10004196 vs. TAIR 10
Match: AT3G10340.1 (phenylalanine ammonia-lyase 4 ) HSP 1 Score: 134.4 bits (337), Expect = 6.8e-32 Identity = 68/108 (62.96%), Postives = 83/108 (76.85%), Query Frame = 0
BLAST of HG10004196 vs. TAIR 10
Match: AT3G53260.1 (phenylalanine ammonia-lyase 2 ) HSP 1 Score: 131.0 bits (328), Expect = 7.5e-31 Identity = 67/108 (62.04%), Postives = 83/108 (76.85%), Query Frame = 0
BLAST of HG10004196 vs. TAIR 10
Match: AT5G04230.1 (phenyl alanine ammonia-lyase 3 ) HSP 1 Score: 128.3 bits (321), Expect = 4.8e-30 Identity = 68/108 (62.96%), Postives = 85/108 (78.70%), Query Frame = 0
BLAST of HG10004196 vs. TAIR 10
Match: AT5G04230.2 (phenyl alanine ammonia-lyase 3 ) HSP 1 Score: 128.3 bits (321), Expect = 4.8e-30 Identity = 68/108 (62.96%), Postives = 85/108 (78.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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