HG10004024 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004024
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	Chr08: 12905810 .. 12906999 (+)
RNA-Seq Expression	HG10004024
Synteny	HG10004024

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAACTTCTGGTGCTGTGCTTAATGGCTTGGGTTCACCCTTCCTCCGTGGAGGTAGCAGAACTCACACCTTGTTGGCTGGAGTCCGAGGCAGTGTCAATGTTGTTGCCTCTCGCAAGCTTGTCGTTGTCGCTGCTGCTCAGGCGAAGAAGTCTTGGCTCCCTGGCGTTAGAGGTGGCGGCAACTTGGTCGACCCAGAATGGCTTGATGGCTCGTATGTCTCTTTTACTTTCTTCAAGTTAGCACATTTGTTTGGTTATTGTTTTGAATCTGCAGTTGGAAGACAGGATTTTTTAGTCTTTTAGTTTAACAGGGGAAGAAAATTAGGAAACAAAATTTGTTATCAAGCATGTTCTAAGCAATTACTGTCGAAATTTTGGTTTAGGCATTTTATCTAACAGTTTTAGAGCAGCATTCTTGAAAAGATCTGTGAAAGGCATTTTATCAAACAGTTTCTAGGCAATTACTGTCTAAAATCTGGTATAGGCATTTCATCGAACATTTTGAAAGCAGTTTCCTCTTAGAAATCTAGAAAAGGCGTTTAATCAAACACTTTCTAAGCAAGCATATTTGAAAACTTTAGAAGAGGCATTTCATCAAACAGTTGATGAGCAATTACTTGTTCCATTTGCGCAGACTTCCAGGCGACTTCGGGTTCGACCCATTGGGGTTGGGGAAGGACCCAGCATTTCTGAAGTGGTACAGAGAGGCAGAGCTGATCCATGGCCGGTGGGCAATGGCAGCAGTTGTCGGAATCTTCGTAGGACAAGCCTGGAGTGGTATCCCATGGTTCGAAGCCGGAGCAGATCCAGGCGCAATTGCTCCATTCTCCTTCGGATCACTGCTAGGAACCCAGCTTCTGTTAATGGGATGGGTGGAAAGCAAGCGATGGGTGGATTTCTTCAACCCAGAATCTCAATCGGTGGAATGGGCGACGCCATGGTCGAGGACGGCTGAGAACTTCGCAAACGCAACCGGAGAACAAGGGTATCCCGGAGGAAAATTCTTCGATCCATTGGGATTTGCAGGAACTATTAAAGATGGGGTTTACATTCCGGACACGGAGAAATTGGAGAGATTGAAGTTGGCGGAGATCAAACATGCTAGGATCGCCATGTTAGCAATGCTCATCTTCTACTTTGAAGCTGGACAGGGGAAGACACCATTGGGTGCTCTTGGATTGTAA

mRNA sequence

ATGGCTGCAACTTCTGGTGCTGTGCTTAATGGCTTGGGTTCACCCTTCCTCCGTGGAGGTAGCAGAACTCACACCTTGTTGGCTGGAGTCCGAGGCAGTGTCAATGTTGTTGCCTCTCGCAAGCTTGTCGTTGTCGCTGCTGCTCAGGCGAAGAAGTCTTGGCTCCCTGGCGTTAGAGGTGGCGGCAACTTGGTCGACCCAGAATGGCTTGATGGCTCACTTCCAGGCGACTTCGGGTTCGACCCATTGGGGTTGGGGAAGGACCCAGCATTTCTGAAGTGGTACAGAGAGGCAGAGCTGATCCATGGCCGGTGGGCAATGGCAGCAGTTGTCGGAATCTTCGTAGGACAAGCCTGGAGTGGTATCCCATGGTTCGAAGCCGGAGCAGATCCAGGCGCAATTGCTCCATTCTCCTTCGGATCACTGCTAGGAACCCAGCTTCTGTTAATGGGATGGGTGGAAAGCAAGCGATGGGTGGATTTCTTCAACCCAGAATCTCAATCGGTGGAATGGGCGACGCCATGGTCGAGGACGGCTGAGAACTTCGCAAACGCAACCGGAGAACAAGGGTATCCCGGAGGAAAATTCTTCGATCCATTGGGATTTGCAGGAACTATTAAAGATGGGGTTTACATTCCGGACACGGAGAAATTGGAGAGATTGAAGTTGGCGGAGATCAAACATGCTAGGATCGCCATGTTAGCAATGCTCATCTTCTACTTTGAAGCTGGACAGGGGAAGACACCATTGGGTGCTCTTGGATTGTAA

Coding sequence (CDS)

ATGGCTGCAACTTCTGGTGCTGTGCTTAATGGCTTGGGTTCACCCTTCCTCCGTGGAGGTAGCAGAACTCACACCTTGTTGGCTGGAGTCCGAGGCAGTGTCAATGTTGTTGCCTCTCGCAAGCTTGTCGTTGTCGCTGCTGCTCAGGCGAAGAAGTCTTGGCTCCCTGGCGTTAGAGGTGGCGGCAACTTGGTCGACCCAGAATGGCTTGATGGCTCACTTCCAGGCGACTTCGGGTTCGACCCATTGGGGTTGGGGAAGGACCCAGCATTTCTGAAGTGGTACAGAGAGGCAGAGCTGATCCATGGCCGGTGGGCAATGGCAGCAGTTGTCGGAATCTTCGTAGGACAAGCCTGGAGTGGTATCCCATGGTTCGAAGCCGGAGCAGATCCAGGCGCAATTGCTCCATTCTCCTTCGGATCACTGCTAGGAACCCAGCTTCTGTTAATGGGATGGGTGGAAAGCAAGCGATGGGTGGATTTCTTCAACCCAGAATCTCAATCGGTGGAATGGGCGACGCCATGGTCGAGGACGGCTGAGAACTTCGCAAACGCAACCGGAGAACAAGGGTATCCCGGAGGAAAATTCTTCGATCCATTGGGATTTGCAGGAACTATTAAAGATGGGGTTTACATTCCGGACACGGAGAAATTGGAGAGATTGAAGTTGGCGGAGATCAAACATGCTAGGATCGCCATGTTAGCAATGCTCATCTTCTACTTTGAAGCTGGACAGGGGAAGACACCATTGGGTGCTCTTGGATTGTAA

Protein sequence

MAATSGAVLNGLGSPFLRGGSRTHTLLAGVRGSVNVVASRKLVVVAAAQAKKSWLPGVRGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL

Homology

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BLAST of HG10004024 vs. NCBI nr
Match: XP_038885126.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic [Benincasa hispida])

HSP 1 Score: 508.4 bits (1308), Expect = 3.5e-140
Identity = 246/255 (96.47%), Postives = 250/255 (98.04%), Query Frame = 0


Query: 1   MAATSGAVLNGLGSPFLRGGSRTHTLLAGVRGSVNVVASRKLVVVAAAQAKKSWLPGVRG 60
           MAATSGAVLNGLGSPFLRGGSRT TLLAGVRG VNVV+SRKLVVVAAAQ KKSWLP V+G
Sbjct: 1   MAATSGAVLNGLGSPFLRGGSRTQTLLAGVRGGVNVVSSRKLVVVAAAQPKKSWLPAVKG 60

Query: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLVDPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF+GQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAML FY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLTFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALGL
Sbjct: 241 FEAGQGKTPLGALGL 255

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BLAST of HG10004024 vs. NCBI nr
Match: XP_022993917.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 507.7 bits (1306), Expect = 5.9e-140
Identity = 245/255 (96.08%), Postives = 249/255 (97.65%), Query Frame = 0


Query: 1   MAATSGAVLNGLGSPFLRGGSRTHTLLAGVRGSVNVVASRKLVVVAAAQAKKSWLPGVRG 60
           MAATSGAVLNGLGSPFLRGGSRT TLLAG RG VNVV SRKLV+VAAAQ KKSW+P V+G
Sbjct: 1   MAATSGAVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVIVAAAQPKKSWIPAVKG 60

Query: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALG+
Sbjct: 241 FEAGQGKTPLGALGV 255

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BLAST of HG10004024 vs. NCBI nr
Match: KAG7016421.1 (Chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 506.5 bits (1303), Expect = 1.3e-139
Identity = 244/255 (95.69%), Postives = 249/255 (97.65%), Query Frame = 0


Query: 1   MAATSGAVLNGLGSPFLRGGSRTHTLLAGVRGSVNVVASRKLVVVAAAQAKKSWLPGVRG 60
           MAATSGAVLNGLGSPFLRGGSRT TLLAG RG VNVV SRKLV+VAAAQ KKSW+P V+G
Sbjct: 1   MAATSGAVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVIVAAAQPKKSWIPAVKG 60

Query: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDT+KLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTDKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALG+
Sbjct: 241 FEAGQGKTPLGALGV 255

[Close]

BLAST of HG10004024 vs. NCBI nr
Match: XP_008441527.1 (PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucumis melo] >KAA0054917.1 chlorophyll a-b binding protein CP24 10A [Cucumis melo var. makuwa] >TYK22706.1 chlorophyll a-b binding protein CP24 10A [Cucumis melo var. makuwa])

HSP 1 Score: 506.1 bits (1302), Expect = 1.7e-139
Identity = 244/255 (95.69%), Postives = 249/255 (97.65%), Query Frame = 0


Query: 1   MAATSGAVLNGLGSPFLRGGSRTHTLLAGVRGSVNVVASRKLVVVAAAQAKKSWLPGVRG 60
           MAATSGAVLNGLGSPFLRG SRT TLLAG RG VNVV+S KLVV+AAAQ KKSW+PGVRG
Sbjct: 1   MAATSGAVLNGLGSPFLRGSSRTRTLLAGARGGVNVVSSSKLVVIAAAQPKKSWIPGVRG 60

Query: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLVDPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGT+KDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALGL
Sbjct: 241 FEAGQGKTPLGALGL 255

[Close]

BLAST of HG10004024 vs. NCBI nr
Match: KAG6578893.1 (Chlorophyll a-b binding protein CP24 10A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 505.4 bits (1300), Expect = 2.9e-139
Identity = 243/255 (95.29%), Postives = 249/255 (97.65%), Query Frame = 0


Query: 1   MAATSGAVLNGLGSPFLRGGSRTHTLLAGVRGSVNVVASRKLVVVAAAQAKKSWLPGVRG 60
           MAATSGAVLNGLGSPFLRGGSRT TLLAG RG VNVV SRKLV+VAA+Q KKSW+P V+G
Sbjct: 1   MAATSGAVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVIVAASQPKKSWIPAVKG 60

Query: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDT+KLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTDKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALG+
Sbjct: 241 FEAGQGKTPLGALGV 255

[Close]

BLAST of HG10004024 vs. ExPASy Swiss-Prot
Match: P27524 (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAP10A PE=3 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 4.0e-123
Identity = 212/256 (82.81%), Postives = 230/256 (89.84%), Query Frame = 0


Query: 1   MAATSGAVLNGLGSPFLRGGSRTHTLLAG-VRGSVNVVASRKLVVVAAAQAKKSWLPGVR 60
           MA TS AVLNGL S FL GG+++  LLA  +   V   A+ K   V AA AKKSW+P VR
Sbjct: 1   MATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVR 60

Query: 61  GGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 120
           GGGNLVDPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAW
Sbjct: 61  GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW 120

Query: 121 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 180
           SGIPWFEAGADPGAIAPFSFG+LLGTQL+LMGWVESKRWVDFF+P+SQSVEWATPWS+TA
Sbjct: 121 SGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTA 180

Query: 181 ENFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 240
           ENFAN TGEQGYPGGKFFDPL  AGT+ +GVY+PDTEKLERLK+AEIKHAR+AMLAMLIF
Sbjct: 181 ENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIF 240

Query: 241 YFEAGQGKTPLGALGL 256
           YFEAGQGKTPLGALGL
Sbjct: 241 YFEAGQGKTPLGALGL 256

[Close]

BLAST of HG10004024 vs. ExPASy Swiss-Prot
Match: P36494 (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea OX=3562 PE=2 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 5.4e-120
Identity = 211/259 (81.47%), Postives = 229/259 (88.42%), Query Frame = 0


Query: 2   AATSG-AVLNGLGSPFLRGGSRTHTLLAGVRGSVNV---VASRKLVVVAAAQA-KKSWLP 61
           AATS  A++NG  SPFL GG ++   L  V   V       SRKLVVVAAA A KKSW+P
Sbjct: 3   AATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIP 62

Query: 62  GVRGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVG 121
            V+GGGN +DPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAM AV+GIFVG
Sbjct: 63  AVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVG 122

Query: 122 QAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWS 181
           QAW+GIPWFEAGADPGA+APFSFG+LLGTQLLLMGWVESKRWVDFF+P+SQSVEWATPWS
Sbjct: 123 QAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWS 182

Query: 182 RTAENFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAM 241
           RTAENF+N+TGEQGYPGGKFFDPL  AGTI +GVY PDT+KLERLKLAEIKHAR+AMLAM
Sbjct: 183 RTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAM 242

Query: 242 LIFYFEAGQGKTPLGALGL 256
           LIFYFEAGQGKTPLGALGL
Sbjct: 243 LIFYFEAGQGKTPLGALGL 261

[Close]

BLAST of HG10004024 vs. ExPASy Swiss-Prot
Match: P27525 (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAP10B PE=3 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 9.2e-120
Identity = 210/257 (81.71%), Postives = 227/257 (88.33%), Query Frame = 0


Query: 1   MAATSG-AVLNGLGSPFLRGGSRTHTLLAGVRGSVNVVASRKLVVVAAAQA-KKSWLPGV 60
           M  TS  AVLNGL S FL GG +T  LL G   +  V   ++ VV AAA A KKSW+P V
Sbjct: 1   MTTTSATAVLNGLSSSFLTGGKKTQALL-GAHVTARVTTPKRFVVAAAAVAPKKSWIPAV 60

Query: 61  RGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA 120
           + GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQA
Sbjct: 61  KSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQA 120

Query: 121 WSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT 180
           WSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF+ +SQS++WATPWS+T
Sbjct: 121 WSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKT 180

Query: 181 AENFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLI 240
           AENFAN TGEQGYPGGKFFDPL  AGT+ +GVY+PDTEKLERLKLAEIKH+R+AMLAMLI
Sbjct: 181 AENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLI 240

Query: 241 FYFEAGQGKTPLGALGL 256
           FYFEAGQGKTPLGALGL
Sbjct: 241 FYFEAGQGKTPLGALGL 256

[Close]

BLAST of HG10004024 vs. ExPASy Swiss-Prot
Match: Q8LCQ4 (Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA6 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.2e-31
Identity = 87/217 (40.09%), Postives = 114/217 (52.53%), Query Frame = 0


Query: 41  KLVVVAAAQAKKS-----------WLPGVRGGGNLVDPEWLDGSLPGDFGFDPLGLGKDP 100
           +LVVV A +   S           W PG         PEWLDGSLPGDFGFDPLGLG DP
Sbjct: 44  RLVVVRAGKEVSSVCEPLPPDRPLWFPGSS------PPEWLDGSLPGDFGFDPLGLGSDP 103

Query: 101 AFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE--AGADPGAIAPFSFG-SLLGTQ 160
             LKW+ +AELIH RWAM AV GI + +    + + E  +  D G+   F+   +L   Q
Sbjct: 104 DTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQ 163

Query: 161 LLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTI 220
           ++LMGW E +RW D   P S  +E   P      +  N   + GYPGG +FD + +    
Sbjct: 164 MVLMGWAEGRRWADLIKPGSVDIEPKYP------HKVNPKPDVGYPGGLWFDFMMWGRGS 223

Query: 221 KDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEA 244
            + V +        L+  EIK+ R+AMLA L F F+A
Sbjct: 224 PEPVMV--------LRTKEIKNGRLAMLAFLGFCFQA 240

[Close]

BLAST of HG10004024 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.1e-31
Identity = 91/246 (36.99%), Postives = 124/246 (50.41%), Query Frame = 0


Query: 5   SGAVLNGLGSPFLRGGSRTHTLLAGVRGSVNVVASRKLVV--VAAAQAKKSWLPGVRGGG 64
           +G+++    + FL GG R       V   +  V SR + V  VAA   +  W PG     
Sbjct: 23  NGSIVGATKASFL-GGKRLR-----VSKFIAPVGSRSVAVSAVAADPDRPLWFPG----- 82

Query: 65  NLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 124
               PEWLDGSLPGDFGFDPLGLG DP  LKW  +AEL+H RWAM    GIF+ +  + I
Sbjct: 83  -STPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKI 142

Query: 125 ------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWS 184
                  W+ AG            +L   +L+L+GW E +RW D   P   + +   P  
Sbjct: 143 GVLNTPSWYTAGEQEYFT---DTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFP-- 202

Query: 185 RTAENFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAM 243
               N    T + GYPGG +FDPLG+              K++ L+  EIK+ R+AMLA+
Sbjct: 203 ---NNKLTGT-DVGYPGGLWFDPLGWGS--------GSPAKIKELRTKEIKNGRLAMLAV 239

[Close]

BLAST of HG10004024 vs. ExPASy TrEMBL
Match: A0A6J1JU87 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489772 PE=3 SV=1)

HSP 1 Score: 507.7 bits (1306), Expect = 2.9e-140
Identity = 245/255 (96.08%), Postives = 249/255 (97.65%), Query Frame = 0


Query: 1   MAATSGAVLNGLGSPFLRGGSRTHTLLAGVRGSVNVVASRKLVVVAAAQAKKSWLPGVRG 60
           MAATSGAVLNGLGSPFLRGGSRT TLLAG RG VNVV SRKLV+VAAAQ KKSW+P V+G
Sbjct: 1   MAATSGAVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVIVAAAQPKKSWIPAVKG 60

Query: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALG+
Sbjct: 241 FEAGQGKTPLGALGV 255

[Close]

BLAST of HG10004024 vs. ExPASy TrEMBL
Match: A0A5D3DGI0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00250 PE=3 SV=1)

HSP 1 Score: 506.1 bits (1302), Expect = 8.3e-140
Identity = 244/255 (95.69%), Postives = 249/255 (97.65%), Query Frame = 0


Query: 1   MAATSGAVLNGLGSPFLRGGSRTHTLLAGVRGSVNVVASRKLVVVAAAQAKKSWLPGVRG 60
           MAATSGAVLNGLGSPFLRG SRT TLLAG RG VNVV+S KLVV+AAAQ KKSW+PGVRG
Sbjct: 1   MAATSGAVLNGLGSPFLRGSSRTRTLLAGARGGVNVVSSSKLVVIAAAQPKKSWIPGVRG 60

Query: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLVDPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGT+KDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALGL
Sbjct: 241 FEAGQGKTPLGALGL 255

[Close]

BLAST of HG10004024 vs. ExPASy TrEMBL
Match: A0A1S3B4E4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485628 PE=3 SV=1)

HSP 1 Score: 506.1 bits (1302), Expect = 8.3e-140
Identity = 244/255 (95.69%), Postives = 249/255 (97.65%), Query Frame = 0


Query: 1   MAATSGAVLNGLGSPFLRGGSRTHTLLAGVRGSVNVVASRKLVVVAAAQAKKSWLPGVRG 60
           MAATSGAVLNGLGSPFLRG SRT TLLAG RG VNVV+S KLVV+AAAQ KKSW+PGVRG
Sbjct: 1   MAATSGAVLNGLGSPFLRGSSRTRTLLAGARGGVNVVSSSKLVVIAAAQPKKSWIPGVRG 60

Query: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLVDPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGT+KDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALGL
Sbjct: 241 FEAGQGKTPLGALGL 255

[Close]

BLAST of HG10004024 vs. ExPASy TrEMBL
Match: A0A6J1FGC5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111445242 PE=3 SV=1)

HSP 1 Score: 504.6 bits (1298), Expect = 2.4e-139
Identity = 243/255 (95.29%), Postives = 248/255 (97.25%), Query Frame = 0


Query: 1   MAATSGAVLNGLGSPFLRGGSRTHTLLAGVRGSVNVVASRKLVVVAAAQAKKSWLPGVRG 60
           MAATSGAVLNGLGSPFL GGSRT TLLAG RG VNVV SRKLV+VAAAQ KKSW+P V+G
Sbjct: 1   MAATSGAVLNGLGSPFLHGGSRTQTLLAGARGGVNVVGSRKLVIVAAAQPKKSWIPAVKG 60

Query: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDT+KLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTDKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALG+
Sbjct: 241 FEAGQGKTPLGALGV 255

[Close]

BLAST of HG10004024 vs. ExPASy TrEMBL
Match: A0A0A0KEF5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_6G057170 PE=3 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 7.0e-139
Identity = 244/255 (95.69%), Postives = 248/255 (97.25%), Query Frame = 0


Query: 1   MAATSGAVLNGLGSPFLRGGSRTHTLLAGVRGSVNVVASRKLVVVAAAQAKKSWLPGVRG 60
           MAATSGAVL GLGSPFLRG SRT TLLAG RGSVNVV+S KLV+VAAAQ KKSWLPGVRG
Sbjct: 1   MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRG 60

Query: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLVDPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGT+KDGVYI DTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALGL
Sbjct: 241 FEAGQGKTPLGALGL 255

[Close]

BLAST of HG10004024 vs. TAIR 10
Match: AT1G15820.1 (light harvesting complex photosystem II subunit 6 )

HSP 1 Score: 426.4 bits (1095), Expect = 1.6e-119
Identity = 207/255 (81.18%), Postives = 224/255 (87.84%), Query Frame = 0


Query: 3   ATSGAVLNGLGSPFLRGGSRTHTLLAGVRGSVNVVASRKLVVV--AAAQAKKSWLPGVRG 62
           A SGAVL+GLGS FL GG R  T LA   G+      RK ++V  AAAQ KKSW+P V+G
Sbjct: 4   AVSGAVLSGLGSSFLTGGKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPAVKG 63

Query: 63  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 122
           GGN +DPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWS
Sbjct: 64  GGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWS 123

Query: 123 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 182
           G+ WFEAGA P AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP+SQSVEWATPWS+TAE
Sbjct: 124 GVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAE 183

Query: 183 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 242
           NFAN TG+QGYPGG+FFDPLG AG  +DGVY PD EKLERLKLAEIKH+R+AM+AMLIFY
Sbjct: 184 NFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAMLIFY 243

Query: 243 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALGL
Sbjct: 244 FEAGQGKTPLGALGL 258

[Close]

BLAST of HG10004024 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 138.3 bits (347), Expect = 8.8e-33
Identity = 87/217 (40.09%), Postives = 114/217 (52.53%), Query Frame = 0


Query: 41  KLVVVAAAQAKKS-----------WLPGVRGGGNLVDPEWLDGSLPGDFGFDPLGLGKDP 100
           +LVVV A +   S           W PG         PEWLDGSLPGDFGFDPLGLG DP
Sbjct: 44  RLVVVRAGKEVSSVCEPLPPDRPLWFPGSS------PPEWLDGSLPGDFGFDPLGLGSDP 103

Query: 101 AFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE--AGADPGAIAPFSFG-SLLGTQ 160
             LKW+ +AELIH RWAM AV GI + +    + + E  +  D G+   F+   +L   Q
Sbjct: 104 DTLKWFAQAELIHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQ 163

Query: 161 LLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTI 220
           ++LMGW E +RW D   P S  +E   P      +  N   + GYPGG +FD + +    
Sbjct: 164 MVLMGWAEGRRWADLIKPGSVDIEPKYP------HKVNPKPDVGYPGGLWFDFMMWGRGS 223

Query: 221 KDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYFEA 244
            + V +        L+  EIK+ R+AMLA L F F+A
Sbjct: 224 PEPVMV--------LRTKEIKNGRLAMLAFLGFCFQA 240

[Close]

BLAST of HG10004024 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 135.2 bits (339), Expect = 7.4e-32
Identity = 100/244 (40.98%), Postives = 130/244 (53.28%), Query Frame = 0


Query: 17  LRGGSRTHTLLAGVRGSVNVVASRKLVVVAA--------AQAKKSWLPGVRGGGNLVDPE 76
           LRGG  T   L   R + +V+  R   V AA        A  + +WLPG      L  P 
Sbjct: 5   LRGGI-TGGFLHHRRDASSVITRRISSVKAAGGGINPTVAVERATWLPG------LNPPP 64

Query: 77  WLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGI---- 136
           +LDG+L GD+GFDPLGLG+DP  LKWY +AEL+H R+AM  V GI        +GI    
Sbjct: 65  YLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLP 124

Query: 137 PWFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 196
            W+EAGA       F F S   L+  Q LLMG+ E+KR++DF +P SQ+ E +  +   A
Sbjct: 125 VWYEAGA-----VKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEA 184

Query: 197 ENFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 244
              A    E GYPGG   +PLG A          D +     KL EIK+ R+AM+AML F
Sbjct: 185 ---ALEGLEPGYPGGPLLNPLGLA---------KDVQNAHDWKLKEIKNGRLAMMAMLGF 224

[Close]

BLAST of HG10004024 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 135.2 bits (339), Expect = 7.4e-32
Identity = 100/244 (40.98%), Postives = 130/244 (53.28%), Query Frame = 0


Query: 17  LRGGSRTHTLLAGVRGSVNVVASRKLVVVAA--------AQAKKSWLPGVRGGGNLVDPE 76
           LRGG  T   L   R + +V+  R   V AA        A  + +WLPG      L  P 
Sbjct: 5   LRGGI-TGGFLHHRRDASSVITRRISSVKAAGGGINPTVAVERATWLPG------LNPPP 64

Query: 77  WLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGI---- 136
           +LDG+L GD+GFDPLGLG+DP  LKWY +AEL+H R+AM  V GI        +GI    
Sbjct: 65  YLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLP 124

Query: 137 PWFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 196
            W+EAGA       F F S   L+  Q LLMG+ E+KR++DF +P SQ+ E +  +   A
Sbjct: 125 VWYEAGA-----VKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEA 184

Query: 197 ENFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIF 244
              A    E GYPGG   +PLG A          D +     KL EIK+ R+AM+AML F
Sbjct: 185 ---ALEGLEPGYPGGPLLNPLGLA---------KDVQNAHDWKLKEIKNGRLAMMAMLGF 224

[Close]

BLAST of HG10004024 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 132.5 bits (332), Expect = 4.8e-31
Identity = 89/249 (35.74%), Postives = 122/249 (49.00%), Query Frame = 0


Query: 5   SGAVLNGLGSPFLRGGSRTH-----TLLAGVRGSVNVVASRKLVVVAAAQAKKSWLPGVR 64
           + + +  + SP   GG +       T+ A  R   +V A      VAA   +  W PG  
Sbjct: 7   ASSAIAAISSPSFLGGKKLRLKKKLTVPAVSRPDASVRA------VAADPDRPIWFPG-- 66

Query: 65  GGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 124
                  PEWLDGSLPGDFGFDPLGL  DP  LKW  +AE++H RWAM    GIF+ +  
Sbjct: 67  ----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFL 126

Query: 125 SGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWAT 184
           + I       W+ AG            +L   +L+L+GW E +RW D   P S + +   
Sbjct: 127 TKIGILNTPSWYTAGEQEYFT---DKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVF 186

Query: 185 PWSRTAENFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAM 243
           P      N    T + GYPGG +FDPLG+              KL+ L+  EIK+ R+AM
Sbjct: 187 P-----NNKLTGT-DVGYPGGLWFDPLGWGS--------GSPAKLKELRTKEIKNGRLAM 226

The following BLAST results are available for this feature:

BLAST of HG10004024 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038885126.1	3.5e-140	96.47	chlorophyll a-b binding protein CP24 10A, chloroplastic [Benincasa hispida]	[more]
XP_022993917.1	5.9e-140	96.08	chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita maxima]	[more]
KAG7016421.1	1.3e-139	95.69	Chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucurbita argyrosperma ...	[more]
XP_008441527.1	1.7e-139	95.69	PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucumis melo...	[more]
KAG6578893.1	2.9e-139	95.29	Chlorophyll a-b binding protein CP24 10A, chloroplastic, partial [Cucurbita argy...	[more]

BLAST of HG10004024 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27524	4.0e-123	82.81	Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum ...	[more]
P36494	5.4e-120	81.47	Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea OX=3562...	[more]
P27525	9.2e-120	81.71	Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum ...	[more]
Q8LCQ4	1.2e-31	40.09	Photosystem I chlorophyll a/b-binding protein 6, chloroplastic OS=Arabidopsis th...	[more]
P13869	2.1e-31	36.99	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]

BLAST of HG10004024 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JU87	2.9e-140	96.08	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A5D3DGI0	8.3e-140	95.69	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3B4E4	8.3e-140	95.69	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1FGC5	2.4e-139	95.29	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A0A0KEF5	7.0e-139	95.69	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]

BLAST of HG10004024 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15820.1	1.6e-119	81.18	light harvesting complex photosystem II subunit 6	[more]
AT1G19150.1	8.8e-33	40.09	photosystem I light harvesting complex gene 6	[more]
AT1G45474.1	7.4e-32	40.98	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	7.4e-32	40.98	photosystem I light harvesting complex gene 5	[more]
AT3G61470.1	4.8e-31	35.74	photosystem I light harvesting complex gene 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 67..254 e-value: 1.4E-53 score: 183.6
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 67..243 e-value: 3.1E-48 score: 164.4
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 2..255
None	No IPR available	PANTHER	PTHR21649:SF107	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 2..255
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 64..255

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004024.1	HG10004024.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding