HG10004010 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10004010
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	extensin-like
Location	Chr08: 12734771 .. 12735088 (+)
RNA-Seq Expression	HG10004010
Synteny	HG10004010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTTTGTAATATTGGCCTCATATCTTTCCTTCTTTCTCATTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATTACATTCCTCCATCTTCAATATCCACCAACCATTACAAACACAAACCTCCATACAAACACAAACCTCCACCGCTGCCACCGTCACCTCCGATCTGCAGGCATGCTGCACCACCACTGCCACCCAAGAAACAATACGAGTTCAAGCCGCTGCCATTGACACCGCCACCACTGCCACCCAAGTCCACATGGCCACAAAAGTTCACCAGTAAATCGCCTCCACCTCCTTTCTAA

mRNA sequence

ATGGGGTTTGTAATATTGGCCTCATATCTTTCCTTCTTTCTCATTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATTACATTCCTCCATCTTCAATATCCACCAACCATTACAAACACAAACCTCCATACAAACACAAACCTCCACCGCTGCCACCGTCACCTCCGATCTGCAGGCATGCTGCACCACCACTGCCACCCAAGAAACAATACGAGTTCAAGCCGCTGCCATTGACACCGCCACCACTGCCACCCAAGTCCACATGGCCACAAAAGTTCACCAGTAAATCGCCTCCACCTCCTTTCTAA

Coding sequence (CDS)

ATGGGGTTTGTAATATTGGCCTCATATCTTTCCTTCTTTCTCATTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATTACATTCCTCCATCTTCAATATCCACCAACCATTACAAACACAAACCTCCATACAAACACAAACCTCCACCGCTGCCACCGTCACCTCCGATCTGCAGGCATGCTGCACCACCACTGCCACCCAAGAAACAATACGAGTTCAAGCCGCTGCCATTGACACCGCCACCACTGCCACCCAAGTCCACATGGCCACAAAAGTTCACCAGTAAATCGCCTCCACCTCCTTTCTAA

Protein sequence

MGFVILASYLSFFLIAFFSLNLPSKLTAHYIPPSSISTNHYKHKPPYKHKPPPLPPSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPQKFTSKSPPPPF

Homology

[Close]

BLAST of HG10004010 vs. NCBI nr
Match: KAA0058957.1 (hypothetical protein E6C27_scaffold98G001420 [Cucumis melo var. makuwa] >TYK10990.1 hypothetical protein E5676_scaffold874G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 4.2e-15
Identity = 66/105 (62.86%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 1   MGFVILASYLSFFLIAFFSLNLPSKLTAHYIPPSSISTNHYKHKPPYKHKPPPLPPSPPI 60
           MGF  LASYL   LIAFF LNLP+KLTAHYI  SS STN Y +  P    P PLPP PPI
Sbjct: 1   MGFETLASYLFSLLIAFFFLNLPTKLTAHYIHKSS-STNLYGYGAP----PLPLPPPPPI 60

Query: 61  CRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPQKFTSKSPPPPF 106
           CR  APP P KKQ + K LP   PP PP   WP++FT KSPPPPF
Sbjct: 61  CRQGAPP-PAKKQNKLKQLPSLSPP-PPMFKWPRRFTPKSPPPPF 98

[Close]

BLAST of HG10004010 vs. NCBI nr
Match: TYK29731.1 (hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 8.7e-13
Identity = 71/141 (50.35%), Postives = 77/141 (54.61%), Query Frame = 0


Query: 1   MGFVILASYLSFFLIAFFSLNLPSKLTAHYIPPSSISTNHYKHKPP----------YKHK 60
           MGFVILASYL F L AFFSLNLPSKLTAHYI PSS  T   ++KPP          Y   
Sbjct: 1   MGFVILASYLFFLLTAFFSLNLPSKLTAHYIHPSS-PTKLREYKPPPLPLPRLVCSYGAP 60

Query: 61  PPPL-----PPSPPICRH--AAPPLPPKKQYEFKPLP--------LTPPPL--------- 106
           PPP      PPSP   RH    PP P KK+Y+FKP P           PPL         
Sbjct: 61  PPPKYKFQPPPSPAKKRHKFRPPPSPAKKRYKFKPPPPPAKKRDNFKSPPLPFMPPLPPS 120

[Close]

BLAST of HG10004010 vs. NCBI nr
Match: XP_023551507.1 (extensin-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07
Identity = 56/115 (48.70%), Postives = 69/115 (60.00%), Query Frame = 0


Query: 1   MGFVILAS-YLSFFLIAFFSLNLPSKLTAHYIPPSSISTNHYKHKPPYKHKPPPLP---- 60
           MG +IL S YL   LIA  SL+LPSKL A  + PS   TN ++++PP    PPPLP    
Sbjct: 1   MGSLILPSFYLFSLLIALLSLDLPSKLAAPSLHPSP-CTNPHQYQPP----PPPLPPFPS 60

Query: 61  -----PSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPQKFTSKSPPPPF 106
                P P +C   APP PPK +++FKP P  P P+P    W +KFT KSPPPPF
Sbjct: 61  KKLPYPPPSVCTQLAPPPPPKNRHKFKPSP--PHPMP----WQRKFTHKSPPPPF 104

[Close]

BLAST of HG10004010 vs. NCBI nr
Match: XP_022993352.1 (extensin-like [Cucurbita maxima])

HSP 1 Score: 58.2 bits (139), Expect = 5.1e-05
Identity = 52/107 (48.60%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 1   MGFVILAS-YLSFFLIAFFSLNLPSKLTAHYIPPSSISTNH-YKHKPPYKHKPPPLPPSP 60
           MG +ILAS YL   LIA  SL+LPSKL A  + PS  +  H Y+  PP+  +  P PP P
Sbjct: 1   MGSLILASFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHEYQPPPPFPSEKLPYPP-P 60

Query: 61  PICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPQKFTSKSPPPPF 106
            +C   APP PPK +++FK  P  P  +PP   W +KFT  SPPPPF
Sbjct: 61  SVCTQLAPP-PPKNRHKFKTSP--PHRMPP---WQRKFTHTSPPPPF 100

[Close]

BLAST of HG10004010 vs. NCBI nr
Match: XP_022939147.1 (extensin-like [Cucurbita moschata])

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-04
Identity = 54/116 (46.55%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 1   MGFVILAS-YLSFFLIAFFSLNLPSKLTAHYIPPSSISTNHYKHKPPYKHKPPPLP---- 60
           MG +IL+S YL   LIA  SL+LPSKL A  + PS   TN ++++PP    PPPLP    
Sbjct: 1   MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSP-CTNPHQYQPP----PPPLPPFPS 60

Query: 61  -----PSPPICRH-AAPPLPPKKQYEFKPLPLTPPPLPPKSTWPQKFTSKSPPPPF 106
                P P +C   A PP PPK +++FK  P  P  +PP   W +KFT  SPPPPF
Sbjct: 61  KKLPYPPPSVCTQLAPPPPPPKNRHKFKTSP--PHRMPP---WQRKFTHTSPPPPF 106

[Close]

BLAST of HG10004010 vs. ExPASy TrEMBL
Match: A0A0A0KI69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.6e-17
Identity = 69/105 (65.71%), Postives = 74/105 (70.48%), Query Frame = 0


Query: 1   MGFVILASYLSFFLIAFFSLNLPSKLTAHYIPPSSISTNHYKHKPPYKHKPPPLPPSPPI 60
           MGF  LASYL   LIAFF LNLPSKLTAHYI  SS STN Y++ PP    P PL P PPI
Sbjct: 1   MGFETLASYLFSLLIAFFFLNLPSKLTAHYIHQSS-STNLYEYGPP----PLPLLPPPPI 60

Query: 61  CRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPQKFTSKSPPPPF 106
           CR  APP P KKQ + KPLP   PP PPK  WP++FT KSPPPPF
Sbjct: 61  CRQGAPP-PAKKQNKLKPLPSLSPP-PPKFKWPRRFTPKSPPPPF 98

[Close]

BLAST of HG10004010 vs. ExPASy TrEMBL
Match: A0A5A7UW72 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00250 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.0e-15
Identity = 66/105 (62.86%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 1   MGFVILASYLSFFLIAFFSLNLPSKLTAHYIPPSSISTNHYKHKPPYKHKPPPLPPSPPI 60
           MGF  LASYL   LIAFF LNLP+KLTAHYI  SS STN Y +  P    P PLPP PPI
Sbjct: 1   MGFETLASYLFSLLIAFFFLNLPTKLTAHYIHKSS-STNLYGYGAP----PLPLPPPPPI 60

Query: 61  CRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPQKFTSKSPPPPF 106
           CR  APP P KKQ + K LP   PP PP   WP++FT KSPPPPF
Sbjct: 61  CRQGAPP-PAKKQNKLKQLPSLSPP-PPMFKWPRRFTPKSPPPPF 98

[Close]

BLAST of HG10004010 vs. ExPASy TrEMBL
Match: A0A5D3E2A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63236G00010 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.2e-13
Identity = 71/141 (50.35%), Postives = 77/141 (54.61%), Query Frame = 0


Query: 1   MGFVILASYLSFFLIAFFSLNLPSKLTAHYIPPSSISTNHYKHKPP----------YKHK 60
           MGFVILASYL F L AFFSLNLPSKLTAHYI PSS  T   ++KPP          Y   
Sbjct: 1   MGFVILASYLFFLLTAFFSLNLPSKLTAHYIHPSS-PTKLREYKPPPLPLPRLVCSYGAP 60

Query: 61  PPPL-----PPSPPICRH--AAPPLPPKKQYEFKPLP--------LTPPPL--------- 106
           PPP      PPSP   RH    PP P KK+Y+FKP P           PPL         
Sbjct: 61  PPPKYKFQPPPSPAKKRHKFRPPPSPAKKRYKFKPPPPPAKKRDNFKSPPLPFMPPLPPS 120

[Close]

BLAST of HG10004010 vs. ExPASy TrEMBL
Match: A0A6J1JSJ5 (extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111489394 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.5e-05
Identity = 52/107 (48.60%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 1   MGFVILAS-YLSFFLIAFFSLNLPSKLTAHYIPPSSISTNH-YKHKPPYKHKPPPLPPSP 60
           MG +ILAS YL   LIA  SL+LPSKL A  + PS  +  H Y+  PP+  +  P PP P
Sbjct: 1   MGSLILASFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHEYQPPPPFPSEKLPYPP-P 60

Query: 61  PICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPQKFTSKSPPPPF 106
            +C   APP PPK +++FK  P  P  +PP   W +KFT  SPPPPF
Sbjct: 61  SVCTQLAPP-PPKNRHKFKTSP--PHRMPP---WQRKFTHTSPPPPF 100

[Close]

BLAST of HG10004010 vs. ExPASy TrEMBL
Match: A0A6J1FFZ9 (extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111445143 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.4e-05
Identity = 54/116 (46.55%), Postives = 68/116 (58.62%), Query Frame = 0


Query: 1   MGFVILAS-YLSFFLIAFFSLNLPSKLTAHYIPPSSISTNHYKHKPPYKHKPPPLP---- 60
           MG +IL+S YL   LIA  SL+LPSKL A  + PS   TN ++++PP    PPPLP    
Sbjct: 1   MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSP-CTNPHQYQPP----PPPLPPFPS 60

Query: 61  -----PSPPICRH-AAPPLPPKKQYEFKPLPLTPPPLPPKSTWPQKFTSKSPPPPF 106
                P P +C   A PP PPK +++FK  P  P  +PP   W +KFT  SPPPPF
Sbjct: 61  KKLPYPPPSVCTQLAPPPPPPKNRHKFKTSP--PHRMPP---WQRKFTHTSPPPPF 106

The following BLAST results are available for this feature:

BLAST of HG10004010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058957.1	4.2e-15	62.86	hypothetical protein E6C27_scaffold98G001420 [Cucumis melo var. makuwa] >TYK1099...	[more]
TYK29731.1	8.7e-13	50.35	hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa]	[more]
XP_023551507.1	1.9e-07	48.70	extensin-3-like [Cucurbita pepo subsp. pepo]	[more]
XP_022993352.1	5.1e-05	48.60	extensin-like [Cucurbita maxima]	[more]
XP_022939147.1	1.9e-04	46.55	extensin-like [Cucurbita moschata]	[more]

BLAST of HG10004010 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10004010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KI69	1.6e-17	65.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1	[more]
A0A5A7UW72	2.0e-15	62.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E2A1	4.2e-13	50.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1JSJ5	2.5e-05	48.60	extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111489394 PE=4 SV=1	[more]
A0A6J1FFZ9	9.4e-05	46.55	extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111445143 PE=4 SV=1	[more]

BLAST of HG10004010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10004010.1	HG10004010.1	mRNA