HG10004010 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGGTTTGTAATATTGGCCTCATATCTTTCCTTCTTTCTCATTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATTACATTCCTCCATCTTCAATATCCACCAACCATTACAAACACAAACCTCCATACAAACACAAACCTCCACCGCTGCCACCGTCACCTCCGATCTGCAGGCATGCTGCACCACCACTGCCACCCAAGAAACAATACGAGTTCAAGCCGCTGCCATTGACACCGCCACCACTGCCACCCAAGTCCACATGGCCACAAAAGTTCACCAGTAAATCGCCTCCACCTCCTTTCTAA ATGGGGTTTGTAATATTGGCCTCATATCTTTCCTTCTTTCTCATTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATTACATTCCTCCATCTTCAATATCCACCAACCATTACAAACACAAACCTCCATACAAACACAAACCTCCACCGCTGCCACCGTCACCTCCGATCTGCAGGCATGCTGCACCACCACTGCCACCCAAGAAACAATACGAGTTCAAGCCGCTGCCATTGACACCGCCACCACTGCCACCCAAGTCCACATGGCCACAAAAGTTCACCAGTAAATCGCCTCCACCTCCTTTCTAA ATGGGGTTTGTAATATTGGCCTCATATCTTTCCTTCTTTCTCATTGCATTTTTCTCTTTAAATCTCCCCTCCAAATTGACTGCACATTACATTCCTCCATCTTCAATATCCACCAACCATTACAAACACAAACCTCCATACAAACACAAACCTCCACCGCTGCCACCGTCACCTCCGATCTGCAGGCATGCTGCACCACCACTGCCACCCAAGAAACAATACGAGTTCAAGCCGCTGCCATTGACACCGCCACCACTGCCACCCAAGTCCACATGGCCACAAAAGTTCACCAGTAAATCGCCTCCACCTCCTTTCTAA MGFVILASYLSFFLIAFFSLNLPSKLTAHYIPPSSISTNHYKHKPPYKHKPPPLPPSPPICRHAAPPLPPKKQYEFKPLPLTPPPLPPKSTWPQKFTSKSPPPPF Homology
BLAST of HG10004010 vs. NCBI nr
Match: KAA0058957.1 (hypothetical protein E6C27_scaffold98G001420 [Cucumis melo var. makuwa] >TYK10990.1 hypothetical protein E5676_scaffold874G00250 [Cucumis melo var. makuwa]) HSP 1 Score: 91.7 bits (226), Expect = 4.2e-15 Identity = 66/105 (62.86%), Postives = 71/105 (67.62%), Query Frame = 0
BLAST of HG10004010 vs. NCBI nr
Match: TYK29731.1 (hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa]) HSP 1 Score: 84.0 bits (206), Expect = 8.7e-13 Identity = 71/141 (50.35%), Postives = 77/141 (54.61%), Query Frame = 0
BLAST of HG10004010 vs. NCBI nr
Match: XP_023551507.1 (extensin-3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 66.2 bits (160), Expect = 1.9e-07 Identity = 56/115 (48.70%), Postives = 69/115 (60.00%), Query Frame = 0
BLAST of HG10004010 vs. NCBI nr
Match: XP_022993352.1 (extensin-like [Cucurbita maxima]) HSP 1 Score: 58.2 bits (139), Expect = 5.1e-05 Identity = 52/107 (48.60%), Postives = 65/107 (60.75%), Query Frame = 0
BLAST of HG10004010 vs. NCBI nr
Match: XP_022939147.1 (extensin-like [Cucurbita moschata]) HSP 1 Score: 56.2 bits (134), Expect = 1.9e-04 Identity = 54/116 (46.55%), Postives = 68/116 (58.62%), Query Frame = 0
BLAST of HG10004010 vs. ExPASy TrEMBL
Match: A0A0A0KI69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G336260 PE=4 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 1.6e-17 Identity = 69/105 (65.71%), Postives = 74/105 (70.48%), Query Frame = 0
BLAST of HG10004010 vs. ExPASy TrEMBL
Match: A0A5A7UW72 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold874G00250 PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 2.0e-15 Identity = 66/105 (62.86%), Postives = 71/105 (67.62%), Query Frame = 0
BLAST of HG10004010 vs. ExPASy TrEMBL
Match: A0A5D3E2A1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63236G00010 PE=4 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 4.2e-13 Identity = 71/141 (50.35%), Postives = 77/141 (54.61%), Query Frame = 0
BLAST of HG10004010 vs. ExPASy TrEMBL
Match: A0A6J1JSJ5 (extensin-like OS=Cucurbita maxima OX=3661 GN=LOC111489394 PE=4 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 2.5e-05 Identity = 52/107 (48.60%), Postives = 65/107 (60.75%), Query Frame = 0
BLAST of HG10004010 vs. ExPASy TrEMBL
Match: A0A6J1FFZ9 (extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111445143 PE=4 SV=1) HSP 1 Score: 56.2 bits (134), Expect = 9.4e-05 Identity = 54/116 (46.55%), Postives = 68/116 (58.62%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
|