HG10003996 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10003996
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionextensin-like
LocationChr08: 12569003 .. 12569515 (+)
RNA-Seq ExpressionHG10003996
SyntenyHG10003996
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCTTGGAGTTCTCCGACGAGGGAGCAGGGACGAAAAGAAGTACTCCAAATCTCCAATGATTCCCGAAAGATCAAGAAGCCCCCACTGCCGCCGATAACGGCGGCGCGGTCGACGATCATAAGGCACGAGTACGAGGACCGGATCATTAAAATAAAGACCCCCGTAGACTTCACCTACATCGTCCAACTCCTCACCGGCGACCCCAATCGTCCGCCACCAGAATACCCTTGTACTTGTGACGACGACAATCCTGACCGCCCACTAGGGATTCTCTCCCCGACTCCGACTTCTCTTCCCCCACTTTTTTCTCCCGATGCTTTTACTCCGTCGCCGTCTCCTCCGCCGCCGTCTTCGTCTGACCAAGAACTCTGTAATTTTGATTTACTAGAAGAATGGGCAGAGCCGGCGGCATTATCATCTTGCCCTGTTGTTAATCCTCCACCATCACCGGTCCCGCCTCCGCCTCCGACGCCGCCACCCGCTCCCAATTTCAGAGTTCCTCCGTAG

mRNA sequence

ATGAGTTCTTGGAGTTCTCCGACGAGGGAGCAGGGACGAAAAGAAGTACTCCAAATCTCCAATGATTCCCGAAAGATCAAGAAGCCCCCACTGCCGCCGATAACGGCGGCGCGGTCGACGATCATAAGGCACGAGTACGAGGACCGGATCATTAAAATAAAGACCCCCGTAGACTTCACCTACATCGTCCAACTCCTCACCGGCGACCCCAATCGTCCGCCACCAGAATACCCTTGTACTTGTGACGACGACAATCCTGACCGCCCACTAGGGATTCTCTCCCCGACTCCGACTTCTCTTCCCCCACTTTTTTCTCCCGATGCTTTTACTCCGTCGCCGTCTCCTCCGCCGCCGTCTTCGTCTGACCAAGAACTCTGTAATTTTGATTTACTAGAAGAATGGGCAGAGCCGGCGGCATTATCATCTTGCCCTGTTGTTAATCCTCCACCATCACCGGTCCCGCCTCCGCCTCCGACGCCGCCACCCGCTCCCAATTTCAGAGTTCCTCCGTAG

Coding sequence (CDS)

ATGAGTTCTTGGAGTTCTCCGACGAGGGAGCAGGGACGAAAAGAAGTACTCCAAATCTCCAATGATTCCCGAAAGATCAAGAAGCCCCCACTGCCGCCGATAACGGCGGCGCGGTCGACGATCATAAGGCACGAGTACGAGGACCGGATCATTAAAATAAAGACCCCCGTAGACTTCACCTACATCGTCCAACTCCTCACCGGCGACCCCAATCGTCCGCCACCAGAATACCCTTGTACTTGTGACGACGACAATCCTGACCGCCCACTAGGGATTCTCTCCCCGACTCCGACTTCTCTTCCCCCACTTTTTTCTCCCGATGCTTTTACTCCGTCGCCGTCTCCTCCGCCGCCGTCTTCGTCTGACCAAGAACTCTGTAATTTTGATTTACTAGAAGAATGGGCAGAGCCGGCGGCATTATCATCTTGCCCTGTTGTTAATCCTCCACCATCACCGGTCCCGCCTCCGCCTCCGACGCCGCCACCCGCTCCCAATTTCAGAGTTCCTCCGTAG

Protein sequence

MSSWSSPTREQGRKEVLQISNDSRKIKKPPLPPITAARSTIIRHEYEDRIIKIKTPVDFTYIVQLLTGDPNRPPPEYPCTCDDDNPDRPLGILSPTPTSLPPLFSPDAFTPSPSPPPPSSSDQELCNFDLLEEWAEPAALSSCPVVNPPPSPVPPPPPTPPPAPNFRVPP
Homology
BLAST of HG10003996 vs. NCBI nr
Match: XP_038885909.1 (extensin-like [Benincasa hispida])

HSP 1 Score: 209.1 bits (531), Expect = 2.9e-50
Identity = 129/186 (69.35%), Postives = 141/186 (75.81%), Query Frame = 0

Query: 1   MSSWSSPTREQGRKEVLQISNDSRKIKKPPLPP---ITAARSTIIRHEYEDRIIKIKTPV 60
           MSS  SP  E GRKE+ QISN+SRKIKKPP PP    TAA S ++R+E E +IIK++TP 
Sbjct: 1   MSSSGSPPGE-GRKELRQISNNSRKIKKPPRPPKTAKTAAPSPVVRYENEPKIIKVETPQ 60

Query: 61  DFTYIVQLLTGDPNRPPPEYPCTCDDDNP----DRPLGILSPTPTSLPPLFSPDAFTPSP 120
           DF YIVQLLTGDPNRPPP+YPCT +D +P    DRP GILSPTPTSLP L  PDAFTPSP
Sbjct: 61  DFKYIVQLLTGDPNRPPPQYPCTSNDHDPQPPDDRPQGILSPTPTSLPLLVYPDAFTPSP 120

Query: 121 SPP-------PPSSSDQELCNFDLLEEWAEPAALSSCPVVNPPPSPVPPP--PPTPPPAP 171
           SPP       PPSSSDQELC FDLLEEWAEPAALSS PVV+ PP   PPP  P   PPAP
Sbjct: 121 SPPPPLPLPLPPSSSDQELCIFDLLEEWAEPAALSSYPVVDSPPLLPPPPLLPAPVPPAP 180

BLAST of HG10003996 vs. NCBI nr
Match: KAA0058916.1 (hypothetical protein E6C27_scaffold98G00840 [Cucumis melo var. makuwa] >TYK23714.1 hypothetical protein E5676_scaffold1607G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 3.6e-32
Identity = 103/180 (57.22%), Postives = 116/180 (64.44%), Query Frame = 0

Query: 1   MSSWSSPTREQGRKEVLQISNDSRKIKKPPLPPITAARSTIIRHEYEDRIIKIKTPVDFT 60
           MSS   P  E G K +LQISN+SR IKKPPLP  T     ++++E E RII ++TP DF 
Sbjct: 1   MSSSKFPPSE-GTKHLLQISNNSRNIKKPPLP--TKRAPPVVKYELEPRIINVQTPTDFK 60

Query: 61  YIVQLLTGDPNRPPPEYPCTCDD----DNP----DRPLGILSPTPTSLPPLFSPDAFTPS 120
           YIVQLLTGDPNRPPP YPC CD     +NP    D P GILSP PTSL PL SP  FTP 
Sbjct: 61  YIVQLLTGDPNRPPPVYPCNCDHHDNYNNPQQPDDHPQGILSPAPTSLRPLVSPGDFTPF 120

Query: 121 PSPPPPSSSDQELCNFDLLEEW-AEPAALS-SCPVVNPPPSPVPPPPPTPPPAPNFRVPP 171
                PSS DQ+  +FDLL+E   EP  LS S PV+N  PSP PPP P P P P FRV P
Sbjct: 121 -----PSSFDQDFNSFDLLQELEVEPPTLSLSPPVINISPSPSPPPSPLPVPQPIFRVSP 172

BLAST of HG10003996 vs. NCBI nr
Match: KAE8647157.1 (hypothetical protein Csa_018820, partial [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 3.3e-14
Identity = 74/168 (44.05%), Postives = 87/168 (51.79%), Query Frame = 0

Query: 5   SSPTREQGRKEVLQISNDSRKIKKPPLPPITAARSTIIRHEYE--DRIIKIKTPVDFTYI 64
           S P RE GRK+VLQIS DS+ IKKPPL P       +IR++YE   +II +KT VDFTYI
Sbjct: 2   SYPGRE-GRKQVLQISKDSQTIKKPPLAP-------VIRYKYEMDPKIINVKTSVDFTYI 61

Query: 65  VQLLTGDPNRPPPEYPCTCDDDNPDRPLGILSPTPTSLPPLFSPDAFTPSPSPPPPSSSD 124
           VQLLTGDPN PPP YPC C      R L +  P          P+ FTP P+ P  S   
Sbjct: 62  VQLLTGDPNHPPPIYPCNCH----QRRLHLSPP----------PNDFTPPPALPLYS--- 115

Query: 125 QELCNFDLLEEWAEPAALSSCPVVNPPPSPVPPPPPTPPPAPNFRVPP 171
                                 ++NPP  P       PP APNF+VPP
Sbjct: 122 ----------------------LLNPPSLP-------PPSAPNFKVPP 115

BLAST of HG10003996 vs. NCBI nr
Match: KAG6602166.1 (hypothetical protein SDJN03_07399, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 1.0e-10
Identity = 61/147 (41.50%), Postives = 80/147 (54.42%), Query Frame = 0

Query: 10  EQGRKEVLQISNDSRKIKKPPLPPITA-ARSTIIRHEYEDRIIKIKTPVDFTYIVQLLTG 69
           E+  ++ LQIS  SR I KPPLPP +A  R  II+++ + +II +KTP +F YIVQLLTG
Sbjct: 14  EKWVEQPLQISKYSRSINKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTG 73

Query: 70  DPNRPPPEYPCTCDDDNPDRPLGILSPTPTSLPPLFSPDAFTPSPSPPPPSSSDQELCNF 129
            PN PPP        D+ D P  +LSP P   PP   PD    S   PPP    +E+  +
Sbjct: 74  SPNHPPP--------DSLDSP--VLSPPPPQSPP--RPDPVDDSVLNPPPC---EEISIY 133

Query: 130 DLLEEWAEPAALSSCPVVNPPPSPVPP 156
           D   +W EP+           P P+PP
Sbjct: 134 DY--DWEEPSY----------PIPIPP 133

BLAST of HG10003996 vs. NCBI nr
Match: XP_022959600.1 (extensin-like [Cucurbita moschata])

HSP 1 Score: 75.9 bits (185), Expect = 3.8e-10
Identity = 61/147 (41.50%), Postives = 79/147 (53.74%), Query Frame = 0

Query: 10  EQGRKEVLQISNDSRKIKKPPLPPITA-ARSTIIRHEYEDRIIKIKTPVDFTYIVQLLTG 69
           E+  ++ LQIS  SR IKKPPLPP +A  R  II+++ + +II +KTP +F YIVQLLTG
Sbjct: 14  EKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTG 73

Query: 70  DPNRPPPEYPCTCDDDNPDRPLGILSPTPTSLPPLFSPDAFTPSPSPPPPSSSDQELCNF 129
            PN PPP        D  D P  +LSP     PP   PD    S   PPP    +E+  +
Sbjct: 74  SPNHPPP--------DPLDSP--VLSPRTPQSPP--QPDPVDESVLNPPPC---EEISIY 133

Query: 130 DLLEEWAEPAALSSCPVVNPPPSPVPP 156
           D   +W EP+           P P+PP
Sbjct: 134 DY--DWEEPSY----------PIPIPP 133

BLAST of HG10003996 vs. ExPASy TrEMBL
Match: A0A5A7UXK4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00250 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.7e-32
Identity = 103/180 (57.22%), Postives = 116/180 (64.44%), Query Frame = 0

Query: 1   MSSWSSPTREQGRKEVLQISNDSRKIKKPPLPPITAARSTIIRHEYEDRIIKIKTPVDFT 60
           MSS   P  E G K +LQISN+SR IKKPPLP  T     ++++E E RII ++TP DF 
Sbjct: 1   MSSSKFPPSE-GTKHLLQISNNSRNIKKPPLP--TKRAPPVVKYELEPRIINVQTPTDFK 60

Query: 61  YIVQLLTGDPNRPPPEYPCTCDD----DNP----DRPLGILSPTPTSLPPLFSPDAFTPS 120
           YIVQLLTGDPNRPPP YPC CD     +NP    D P GILSP PTSL PL SP  FTP 
Sbjct: 61  YIVQLLTGDPNRPPPVYPCNCDHHDNYNNPQQPDDHPQGILSPAPTSLRPLVSPGDFTPF 120

Query: 121 PSPPPPSSSDQELCNFDLLEEW-AEPAALS-SCPVVNPPPSPVPPPPPTPPPAPNFRVPP 171
                PSS DQ+  +FDLL+E   EP  LS S PV+N  PSP PPP P P P P FRV P
Sbjct: 121 -----PSSFDQDFNSFDLLQELEVEPPTLSLSPPVINISPSPSPPPSPLPVPQPIFRVSP 172

BLAST of HG10003996 vs. ExPASy TrEMBL
Match: A0A0A0KCP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338070 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 5.0e-16
Identity = 65/120 (54.17%), Postives = 74/120 (61.67%), Query Frame = 0

Query: 5   SSPTREQGRKEVLQISNDSRKIKKPPLPPITAARSTIIRHEYE--DRIIKIKTPVDFTYI 64
           S P RE GRK+VLQIS DS+ IKKPPL P       +IR++YE   +II +KT VDFTYI
Sbjct: 2   SYPGRE-GRKQVLQISKDSQTIKKPPLAP-------VIRYKYEMDPKIINVKTSVDFTYI 61

Query: 65  VQLLTGDPNRPPPEYPCTCDDDNPDRPLGILSPTPTSL--PPLFSPDAFTPSPSPPPPSS 121
           VQLLTGDPN PPP YPC C      R L  LSP P     PP     +    PS PPPS+
Sbjct: 62  VQLLTGDPNHPPPIYPCNCH----QRRLH-LSPPPNDFTPPPALPLYSLLNPPSLPPPSA 108

BLAST of HG10003996 vs. ExPASy TrEMBL
Match: A0A6J1H6R4 (extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111460625 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.9e-10
Identity = 61/147 (41.50%), Postives = 79/147 (53.74%), Query Frame = 0

Query: 10  EQGRKEVLQISNDSRKIKKPPLPPITA-ARSTIIRHEYEDRIIKIKTPVDFTYIVQLLTG 69
           E+  ++ LQIS  SR IKKPPLPP +A  R  II+++ + +II +KTP +F YIVQLLTG
Sbjct: 14  EKWVEQPLQISKYSRSIKKPPLPPSSAIPRQAIIKYKVKPKIIHVKTPAEFKYIVQLLTG 73

Query: 70  DPNRPPPEYPCTCDDDNPDRPLGILSPTPTSLPPLFSPDAFTPSPSPPPPSSSDQELCNF 129
            PN PPP        D  D P  +LSP     PP   PD    S   PPP    +E+  +
Sbjct: 74  SPNHPPP--------DPLDSP--VLSPRTPQSPP--QPDPVDESVLNPPPC---EEISIY 133

Query: 130 DLLEEWAEPAALSSCPVVNPPPSPVPP 156
           D   +W EP+           P P+PP
Sbjct: 134 DY--DWEEPSY----------PIPIPP 133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038885909.12.9e-5069.35extensin-like [Benincasa hispida][more]
KAA0058916.13.6e-3257.22hypothetical protein E6C27_scaffold98G00840 [Cucumis melo var. makuwa] >TYK23714... [more]
KAE8647157.13.3e-1444.05hypothetical protein Csa_018820, partial [Cucumis sativus][more]
KAG6602166.11.0e-1041.50hypothetical protein SDJN03_07399, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022959600.13.8e-1041.50extensin-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UXK41.7e-3257.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KCP35.0e-1654.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338070 PE=4 SV=1[more]
A0A6J1H6R41.9e-1041.50extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111460625 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..125
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..170
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..170

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10003996.1HG10003996.1mRNA