HG10003996 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGTTCTTGGAGTTCTCCGACGAGGGAGCAGGGACGAAAAGAAGTACTCCAAATCTCCAATGATTCCCGAAAGATCAAGAAGCCCCCACTGCCGCCGATAACGGCGGCGCGGTCGACGATCATAAGGCACGAGTACGAGGACCGGATCATTAAAATAAAGACCCCCGTAGACTTCACCTACATCGTCCAACTCCTCACCGGCGACCCCAATCGTCCGCCACCAGAATACCCTTGTACTTGTGACGACGACAATCCTGACCGCCCACTAGGGATTCTCTCCCCGACTCCGACTTCTCTTCCCCCACTTTTTTCTCCCGATGCTTTTACTCCGTCGCCGTCTCCTCCGCCGCCGTCTTCGTCTGACCAAGAACTCTGTAATTTTGATTTACTAGAAGAATGGGCAGAGCCGGCGGCATTATCATCTTGCCCTGTTGTTAATCCTCCACCATCACCGGTCCCGCCTCCGCCTCCGACGCCGCCACCCGCTCCCAATTTCAGAGTTCCTCCGTAG ATGAGTTCTTGGAGTTCTCCGACGAGGGAGCAGGGACGAAAAGAAGTACTCCAAATCTCCAATGATTCCCGAAAGATCAAGAAGCCCCCACTGCCGCCGATAACGGCGGCGCGGTCGACGATCATAAGGCACGAGTACGAGGACCGGATCATTAAAATAAAGACCCCCGTAGACTTCACCTACATCGTCCAACTCCTCACCGGCGACCCCAATCGTCCGCCACCAGAATACCCTTGTACTTGTGACGACGACAATCCTGACCGCCCACTAGGGATTCTCTCCCCGACTCCGACTTCTCTTCCCCCACTTTTTTCTCCCGATGCTTTTACTCCGTCGCCGTCTCCTCCGCCGCCGTCTTCGTCTGACCAAGAACTCTGTAATTTTGATTTACTAGAAGAATGGGCAGAGCCGGCGGCATTATCATCTTGCCCTGTTGTTAATCCTCCACCATCACCGGTCCCGCCTCCGCCTCCGACGCCGCCACCCGCTCCCAATTTCAGAGTTCCTCCGTAG ATGAGTTCTTGGAGTTCTCCGACGAGGGAGCAGGGACGAAAAGAAGTACTCCAAATCTCCAATGATTCCCGAAAGATCAAGAAGCCCCCACTGCCGCCGATAACGGCGGCGCGGTCGACGATCATAAGGCACGAGTACGAGGACCGGATCATTAAAATAAAGACCCCCGTAGACTTCACCTACATCGTCCAACTCCTCACCGGCGACCCCAATCGTCCGCCACCAGAATACCCTTGTACTTGTGACGACGACAATCCTGACCGCCCACTAGGGATTCTCTCCCCGACTCCGACTTCTCTTCCCCCACTTTTTTCTCCCGATGCTTTTACTCCGTCGCCGTCTCCTCCGCCGCCGTCTTCGTCTGACCAAGAACTCTGTAATTTTGATTTACTAGAAGAATGGGCAGAGCCGGCGGCATTATCATCTTGCCCTGTTGTTAATCCTCCACCATCACCGGTCCCGCCTCCGCCTCCGACGCCGCCACCCGCTCCCAATTTCAGAGTTCCTCCGTAG MSSWSSPTREQGRKEVLQISNDSRKIKKPPLPPITAARSTIIRHEYEDRIIKIKTPVDFTYIVQLLTGDPNRPPPEYPCTCDDDNPDRPLGILSPTPTSLPPLFSPDAFTPSPSPPPPSSSDQELCNFDLLEEWAEPAALSSCPVVNPPPSPVPPPPPTPPPAPNFRVPP Homology
BLAST of HG10003996 vs. NCBI nr
Match: XP_038885909.1 (extensin-like [Benincasa hispida]) HSP 1 Score: 209.1 bits (531), Expect = 2.9e-50 Identity = 129/186 (69.35%), Postives = 141/186 (75.81%), Query Frame = 0
BLAST of HG10003996 vs. NCBI nr
Match: KAA0058916.1 (hypothetical protein E6C27_scaffold98G00840 [Cucumis melo var. makuwa] >TYK23714.1 hypothetical protein E5676_scaffold1607G00250 [Cucumis melo var. makuwa]) HSP 1 Score: 149.1 bits (375), Expect = 3.6e-32 Identity = 103/180 (57.22%), Postives = 116/180 (64.44%), Query Frame = 0
BLAST of HG10003996 vs. NCBI nr
Match: KAE8647157.1 (hypothetical protein Csa_018820, partial [Cucumis sativus]) HSP 1 Score: 89.4 bits (220), Expect = 3.3e-14 Identity = 74/168 (44.05%), Postives = 87/168 (51.79%), Query Frame = 0
BLAST of HG10003996 vs. NCBI nr
Match: KAG6602166.1 (hypothetical protein SDJN03_07399, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 77.8 bits (190), Expect = 1.0e-10 Identity = 61/147 (41.50%), Postives = 80/147 (54.42%), Query Frame = 0
BLAST of HG10003996 vs. NCBI nr
Match: XP_022959600.1 (extensin-like [Cucurbita moschata]) HSP 1 Score: 75.9 bits (185), Expect = 3.8e-10 Identity = 61/147 (41.50%), Postives = 79/147 (53.74%), Query Frame = 0
BLAST of HG10003996 vs. ExPASy TrEMBL
Match: A0A5A7UXK4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00250 PE=4 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 1.7e-32 Identity = 103/180 (57.22%), Postives = 116/180 (64.44%), Query Frame = 0
BLAST of HG10003996 vs. ExPASy TrEMBL
Match: A0A0A0KCP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G338070 PE=4 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 5.0e-16 Identity = 65/120 (54.17%), Postives = 74/120 (61.67%), Query Frame = 0
BLAST of HG10003996 vs. ExPASy TrEMBL
Match: A0A6J1H6R4 (extensin-like OS=Cucurbita moschata OX=3662 GN=LOC111460625 PE=4 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 1.9e-10 Identity = 61/147 (41.50%), Postives = 79/147 (53.74%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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