HG10003947 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10003947
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr08: 12000686 .. 12001096 (+)
RNA-Seq ExpressionHG10003947
SyntenyHG10003947
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCCAGAATCTCGCCGGTAGATAATCGTGTTCCTCTGCTTCTTAAACCCCAACCAATCCCCGACAAAATTCCCCCAATTCTGATTCCGACCGCTGTGGACGTGCCGGAGGTGGGCCGTAAGAAGTTCCCGGTGAACTTATTGGCTGGATCAGAACTGGGTGTGAAGGTGAGACCCAAAGGAGAGTCGATGGATATGGTGGTGGTGGAGCCGGCGGTGGCGAAAGCGTCCAACCGGGCGGTTCAAATGGCGATGGGGTTCAAAGCCGGTGGTGGAAAAATGGGATCTGTGATTCCGAAGAAGAGGAAGTTAGTGAAGACAATGATGTATCACTCCATAAAGGATTTTGTTATATCACTGTTTCGTACGCCGCCGTCCGCCGGCGCCAGCGCCGGAGCTCCGCCGTAA

mRNA sequence

ATGGGATCCAGAATCTCGCCGGTAGATAATCGTGTTCCTCTGCTTCTTAAACCCCAACCAATCCCCGACAAAATTCCCCCAATTCTGATTCCGACCGCTGTGGACGTGCCGGAGGTGGGCCGTAAGAAGTTCCCGGTGAACTTATTGGCTGGATCAGAACTGGGTGTGAAGGTGAGACCCAAAGGAGAGTCGATGGATATGGTGGTGGTGGAGCCGGCGGTGGCGAAAGCGTCCAACCGGGCGGTTCAAATGGCGATGGGGTTCAAAGCCGGTGGTGGAAAAATGGGATCTGTGATTCCGAAGAAGAGGAAGTTAGTGAAGACAATGATGTATCACTCCATAAAGGATTTTGTTATATCACTGTTTCGTACGCCGCCGTCCGCCGGCGCCAGCGCCGGAGCTCCGCCGTAA

Coding sequence (CDS)

ATGGGATCCAGAATCTCGCCGGTAGATAATCGTGTTCCTCTGCTTCTTAAACCCCAACCAATCCCCGACAAAATTCCCCCAATTCTGATTCCGACCGCTGTGGACGTGCCGGAGGTGGGCCGTAAGAAGTTCCCGGTGAACTTATTGGCTGGATCAGAACTGGGTGTGAAGGTGAGACCCAAAGGAGAGTCGATGGATATGGTGGTGGTGGAGCCGGCGGTGGCGAAAGCGTCCAACCGGGCGGTTCAAATGGCGATGGGGTTCAAAGCCGGTGGTGGAAAAATGGGATCTGTGATTCCGAAGAAGAGGAAGTTAGTGAAGACAATGATGTATCACTCCATAAAGGATTTTGTTATATCACTGTTTCGTACGCCGCCGTCCGCCGGCGCCAGCGCCGGAGCTCCGCCGTAA

Protein sequence

MGSRISPVDNRVPLLLKPQPIPDKIPPILIPTAVDVPEVGRKKFPVNLLAGSELGVKVRPKGESMDMVVVEPAVAKASNRAVQMAMGFKAGGGKMGSVIPKKRKLVKTMMYHSIKDFVISLFRTPPSAGASAGAPP
Homology
BLAST of HG10003947 vs. NCBI nr
Match: KGN47677.1 (hypothetical protein Csa_018325 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 5.4e-23
Identity = 66/102 (64.71%), Postives = 79/102 (77.45%), Query Frame = 0

Query: 34  VDVPEVGRKKFPVNLLAGSELGVKVRPKGESMDMVVVEPAVAKASNRAVQMAMGFKAGGG 93
           +DVP VG ++FP+NL+ GSELG++VRP+GES  M VVE    +AS+R VQMAMG+K GG 
Sbjct: 1   MDVPGVGGQQFPMNLMTGSELGMRVRPEGES--MAVVEAVTVEASDRVVQMAMGYKTGGP 60

Query: 94  KMGSVIPKKRKLVKTMMYHSIKDFVISLFRTPPSAGASAGAP 136
           KM SVIP KRKLVK MMY SIK+FVIS F   PS G+SA AP
Sbjct: 61  KMKSVIPMKRKLVKRMMYESIKNFVISRF---PSVGSSARAP 97

BLAST of HG10003947 vs. NCBI nr
Match: KAG6578935.1 (hypothetical protein SDJN03_23383, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-14
Identity = 59/117 (50.43%), Postives = 75/117 (64.10%), Query Frame = 0

Query: 16  LKPQPIPDKIPPILIPTA--VDVPEVGRKKFPVNLLAGSELGVKVRPKGESMDMVVVEPA 75
           +KP+PI +KI P+ IPT     +P VG KKFP  ++AGS+  + VRP  ES       PA
Sbjct: 1   MKPRPITEKI-PMQIPTTEYTPIPRVGSKKFPARIIAGSKPAL-VRPIRES-------PA 60

Query: 76  VAKASNRAVQMAMGFKAGGGKMGSVIPKKRKLVKTMMYHSIKDFVISLFRTPPSAGA 131
           VA+ +NR VQ             SVIPKKR+LVKTMMYHS+K+F+ S+FR  PSAGA
Sbjct: 61  VAELANRTVQKK-----------SVIPKKRRLVKTMMYHSMKNFIKSVFRRKPSAGA 97

BLAST of HG10003947 vs. NCBI nr
Match: KAG6578934.1 (hypothetical protein SDJN03_23382, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.3 bits (207), Expect = 8.6e-13
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 0

Query: 30  IPTAVDVPEVGRKKFPVNLLAGSELGVKVRPKGESMDMVVVEPAVAKASNRAVQMAMGFK 89
           IPTA  +P VG +KFP +++AGS+  + VRP GES       PA A+ +NR VQ      
Sbjct: 3   IPTAEYIPGVGSEKFPASIIAGSKPAL-VRPIGES-------PAAAELTNRTVQKK---- 62

Query: 90  AGGGKMGSVIPKKRKLVKTMMYHSIKDFVISLFRTPPSAGA 131
                  SVIPKKR+LVKTMMYH++K+F+ S+FR  PSAGA
Sbjct: 63  -------SVIPKKRRLVKTMMYHAMKNFIKSVFRRKPSAGA 84

BLAST of HG10003947 vs. NCBI nr
Match: KAE8647204.1 (hypothetical protein Csa_019006, partial [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 3.3e-12
Identity = 45/68 (66.18%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 69  VVEPAVAKASNRAVQMAMGFKAGGGKMGSVIPKKRKLVKTMMYHSIKDFVISLFRTPPSA 128
           +VE  VA+ASN AVQM MG+K G  KM SVIPK+RKLVKTMMYHSIK F+IS FR   S 
Sbjct: 3   MVEGTVAEASNPAVQMTMGYKGGCRKMISVIPKQRKLVKTMMYHSIKCFIISFFRLSFST 62

Query: 129 GASAGAPP 137
               GAPP
Sbjct: 63  ATGTGAPP 70

BLAST of HG10003947 vs. NCBI nr
Match: KAG6602134.1 (hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.2 bits (165), Expect = 6.4e-08
Identity = 48/131 (36.64%), Postives = 66/131 (50.38%), Query Frame = 0

Query: 1   MGSRISPVDNRV-----PLLLKPQPIPDKIPPILIPTAVDVPEVGRKKFPVNLLAGSELG 60
           M  R+SP DNR      P    P  +     P + P   ++  + +   P  +  G    
Sbjct: 1   MRFRVSPDDNRELPEQNPTAHHPPSVNGNHLPPIDPVKSEIATLTKLAIPYQICDGKAKS 60

Query: 61  VKVRPKGESMDMVVVEPAVAKASNRAVQMAMGFKAGGGKMGSVIPKKRKLVKTMMYHSIK 120
           V        + ++  +P  A  S  +V+    ++AG GK+ SVIPKKRKLVKTMMYH IK
Sbjct: 61  V--------LPLIPAKPDTAVTSTNSVE----YRAGIGKVKSVIPKKRKLVKTMMYHCIK 119

Query: 121 DFVISLFRTPP 127
           DF+ SLFR PP
Sbjct: 121 DFLKSLFRPPP 119

BLAST of HG10003947 vs. ExPASy TrEMBL
Match: A0A0A0KH01 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.6e-23
Identity = 66/102 (64.71%), Postives = 79/102 (77.45%), Query Frame = 0

Query: 34  VDVPEVGRKKFPVNLLAGSELGVKVRPKGESMDMVVVEPAVAKASNRAVQMAMGFKAGGG 93
           +DVP VG ++FP+NL+ GSELG++VRP+GES  M VVE    +AS+R VQMAMG+K GG 
Sbjct: 1   MDVPGVGGQQFPMNLMTGSELGMRVRPEGES--MAVVEAVTVEASDRVVQMAMGYKTGGP 60

Query: 94  KMGSVIPKKRKLVKTMMYHSIKDFVISLFRTPPSAGASAGAP 136
           KM SVIP KRKLVK MMY SIK+FVIS F   PS G+SA AP
Sbjct: 61  KMKSVIPMKRKLVKRMMYESIKNFVISRF---PSVGSSARAP 97

BLAST of HG10003947 vs. ExPASy TrEMBL
Match: A0A6J1CJW3 (uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011963 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.4e-06
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 0

Query: 56  VKVRPKGESMDMVVVEPAVAKASNRAVQMAMGFKAGGGKMGSVIPKKRKLVKTMMYHSIK 115
           +K  P  +  ++    P +          A+G +A GGK+ SVIPK+R LVKTM+Y+ IK
Sbjct: 14  LKPEPIADGTELAPNNPVMISEMAVTANGAIGSRA-GGKVKSVIPKRRILVKTMIYNFIK 73

Query: 116 DFVISLFRTPPSAGASAGAPP 137
           DF+ISLFR PPSA      PP
Sbjct: 74  DFIISLFRPPPSAVPEPPPPP 93

BLAST of HG10003947 vs. ExPASy TrEMBL
Match: A0A0A0KDQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 9.3e-05
Identity = 26/35 (74.29%), Postives = 32/35 (91.43%), Query Frame = 0

Query: 89  KAGGGKMGSVIPKKRKLVKTMMYHSIKDFVISLFR 124
           + GG K+ SVIPK+RKLVKTM+YHS+KDF+ISLFR
Sbjct: 32  RVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFR 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN47677.15.4e-2364.71hypothetical protein Csa_018325 [Cucumis sativus][more]
KAG6578935.11.6e-1450.43hypothetical protein SDJN03_23383, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6578934.18.6e-1350.50hypothetical protein SDJN03_23382, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8647204.13.3e-1266.18hypothetical protein Csa_019006, partial [Cucumis sativus][more]
KAG6602134.16.4e-0836.64hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KH012.6e-2364.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1[more]
A0A6J1CJW36.4e-0644.44uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A0A0KDQ79.3e-0574.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10003947.1HG10003947.1mRNA