HG10003945 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10003945
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr08: 11971807 .. 11972067 (+)
RNA-Seq ExpressionHG10003945
SyntenyHG10003945
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTCAGAGTGTTGTCGGACGTCAATCCGGTCTCCGATCTTCCTCCAAACAAGCCGGTGCTGGTGCCGGCGGCGGCGGCGGCGGCGTTGAACAGGCCGGCGATTGGGTACAGAGTGGGCGGTGGAAAAATGAAATCTGTGATTCCGAAGAAGAGGAAGCTAGTGAAGACGATGATTTACCACTGTATTAAGGACTTCCTTATATCGCTCTTTCGTCCGTCGCCGGAGATCGAACGACCGCCGCCAACCCATTTCTGA

mRNA sequence

ATGCATTTCAGAGTGTTGTCGGACGTCAATCCGGTCTCCGATCTTCCTCCAAACAAGCCGGTGCTGGTGCCGGCGGCGGCGGCGGCGGCGTTGAACAGGCCGGCGATTGGGTACAGAGTGGGCGGTGGAAAAATGAAATCTGTGATTCCGAAGAAGAGGAAGCTAGTGAAGACGATGATTTACCACTGTATTAAGGACTTCCTTATATCGCTCTTTCGTCCGTCGCCGGAGATCGAACGACCGCCGCCAACCCATTTCTGA

Coding sequence (CDS)

ATGCATTTCAGAGTGTTGTCGGACGTCAATCCGGTCTCCGATCTTCCTCCAAACAAGCCGGTGCTGGTGCCGGCGGCGGCGGCGGCGGCGTTGAACAGGCCGGCGATTGGGTACAGAGTGGGCGGTGGAAAAATGAAATCTGTGATTCCGAAGAAGAGGAAGCTAGTGAAGACGATGATTTACCACTGTATTAAGGACTTCCTTATATCGCTCTTTCGTCCGTCGCCGGAGATCGAACGACCGCCGCCAACCCATTTCTGA

Protein sequence

MHFRVLSDVNPVSDLPPNKPVLVPAAAAAALNRPAIGYRVGGGKMKSVIPKKRKLVKTMIYHCIKDFLISLFRPSPEIERPPPTHF
Homology
BLAST of HG10003945 vs. NCBI nr
Match: KAE8647260.1 (hypothetical protein Csa_018328, partial [Cucumis sativus])

HSP 1 Score: 93.2 bits (230), Expect = 1.2e-15
Identity = 53/84 (63.10%), Postives = 59/84 (70.24%), Query Frame = 0

Query: 1  MHFRVLSDVNPVSDLPPNKPVLVPAAAAAALNRPAIGYRVGGGKMKSVIPKKRKLVKTMI 60
          MH  +L   N VSDLPP+KPV       AA   P I  RVGG K+KSVIPK+RKLVKTMI
Sbjct: 1  MHCTLLPHHNRVSDLPPDKPV-------AAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMI 60

Query: 61 YHCIKDFLISLFRPSPEI-ERPPP 84
          YH +KDFLISLFRPS +I  RP P
Sbjct: 61 YHSLKDFLISLFRPSSDIHNRPKP 77

BLAST of HG10003945 vs. NCBI nr
Match: XP_022141661.1 (uncharacterized protein LOC111011963 [Momordica charantia])

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-10
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 0

Query: 4  RVLSDVNPVSD---LPPNKPVLVPAAAAAALNRPAIGYRVGGGKMKSVIPKKRKLVKTMI 63
          RVL    P++D   L PN PV++   A  A    AIG R  GGK+KSVIPK+R LVKTMI
Sbjct: 11 RVLLKPEPIADGTELAPNNPVMISEMAVTA--NGAIGSR-AGGKVKSVIPKRRILVKTMI 70

Query: 64 YHCIKDFLISLFRPSPE-IERPPP 84
          Y+ IKDF+ISLFRP P  +  PPP
Sbjct: 71 YNFIKDFIISLFRPPPSAVPEPPP 91

BLAST of HG10003945 vs. NCBI nr
Match: KAG6602134.1 (hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.1 bits (183), Expect = 3.3e-10
Identity = 39/63 (61.90%), Postives = 46/63 (73.02%), Query Frame = 0

Query: 22  LVPAAA-AAALNRPAIGYRVGGGKMKSVIPKKRKLVKTMIYHCIKDFLISLFRPSPEIER 81
           L+PA    A  +  ++ YR G GK+KSVIPKKRKLVKTM+YHCIKDFL SLFRP P+  R
Sbjct: 64  LIPAKPDTAVTSTNSVEYRAGIGKVKSVIPKKRKLVKTMMYHCIKDFLKSLFRPPPKTHR 123

Query: 82  PPP 84
             P
Sbjct: 124 RRP 126

BLAST of HG10003945 vs. NCBI nr
Match: TYK18680.1 (hypothetical protein E5676_scaffold481G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 45/78 (57.69%), Postives = 51/78 (65.38%), Query Frame = 0

Query: 1  MHFRVLSDVNPVSDLPPNKPVLVPAAAAAALNRPAIGYRVGGGKMKSVIPKKRKLVKTMI 60
          M FRV S  NPV          VP  A  AL  PAI YR G G MKSVIPKKRKLVK M+
Sbjct: 1  MKFRVFSANNPV----------VPEKAQTAL-EPAIVYR-GAGNMKSVIPKKRKLVKRMM 60

Query: 61 YHCIKDFLISLFRPSPEI 79
          Y CIK+++ SLFRP+PE+
Sbjct: 61 YDCIKEWIKSLFRPTPEL 66

BLAST of HG10003945 vs. NCBI nr
Match: KAG6602131.1 (hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.4 bits (176), Expect = 2.1e-09
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 0

Query: 22  LVPAAAAAAL-NRPAIGYRVGGGKMKSVIPKKRKLVKTMIYHCIKDFLISLFRPSPEIER 81
           L PA    A+ +  ++GYR G GK+KSVIPKKRKLVKTM+YHCIK+F+ SLFR      R
Sbjct: 95  LTPATPETAVTSTNSLGYRAGVGKVKSVIPKKRKLVKTMMYHCIKNFIKSLFR------R 153

Query: 82  PPPTH 86
           PP TH
Sbjct: 155 PPKTH 153

BLAST of HG10003945 vs. ExPASy TrEMBL
Match: A0A0A0KDQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.7e-16
Identity = 53/84 (63.10%), Postives = 59/84 (70.24%), Query Frame = 0

Query: 1  MHFRVLSDVNPVSDLPPNKPVLVPAAAAAALNRPAIGYRVGGGKMKSVIPKKRKLVKTMI 60
          MH  +L   N VSDLPP+KPV       AA   P I  RVGG K+KSVIPK+RKLVKTMI
Sbjct: 1  MHCTLLPHHNRVSDLPPDKPV-------AAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMI 60

Query: 61 YHCIKDFLISLFRPSPEI-ERPPP 84
          YH +KDFLISLFRPS +I  RP P
Sbjct: 61 YHSLKDFLISLFRPSSDIHNRPKP 77

BLAST of HG10003945 vs. ExPASy TrEMBL
Match: A0A6J1CJW3 (uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011963 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.5e-11
Identity = 47/84 (55.95%), Postives = 56/84 (66.67%), Query Frame = 0

Query: 4  RVLSDVNPVSD---LPPNKPVLVPAAAAAALNRPAIGYRVGGGKMKSVIPKKRKLVKTMI 63
          RVL    P++D   L PN PV++   A  A    AIG R  GGK+KSVIPK+R LVKTMI
Sbjct: 11 RVLLKPEPIADGTELAPNNPVMISEMAVTA--NGAIGSR-AGGKVKSVIPKRRILVKTMI 70

Query: 64 YHCIKDFLISLFRPSPE-IERPPP 84
          Y+ IKDF+ISLFRP P  +  PPP
Sbjct: 71 YNFIKDFIISLFRPPPSAVPEPPP 91

BLAST of HG10003945 vs. ExPASy TrEMBL
Match: A0A5D3D590 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold481G00190 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 6.1e-10
Identity = 45/78 (57.69%), Postives = 51/78 (65.38%), Query Frame = 0

Query: 1  MHFRVLSDVNPVSDLPPNKPVLVPAAAAAALNRPAIGYRVGGGKMKSVIPKKRKLVKTMI 60
          M FRV S  NPV          VP  A  AL  PAI YR G G MKSVIPKKRKLVK M+
Sbjct: 1  MKFRVFSANNPV----------VPEKAQTAL-EPAIVYR-GAGNMKSVIPKKRKLVKRMM 60

Query: 61 YHCIKDFLISLFRPSPEI 79
          Y CIK+++ SLFRP+PE+
Sbjct: 61 YDCIKEWIKSLFRPTPEL 66

BLAST of HG10003945 vs. ExPASy TrEMBL
Match: A0A0A0KH01 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 2.2e-04
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 0

Query: 23 VPAAAAAALNRPAIGYRVGGGKMKSVIPKKRKLVKTMIYHCIKDFLISLFRPSPEIERPP 82
          V   A+  + + A+GY+ GG KMKSVIP KRKLVK M+Y  IK+F+IS F       R P
Sbjct: 38 VTVEASDRVVQMAMGYKTGGPKMKSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAP 97

BLAST of HG10003945 vs. ExPASy TrEMBL
Match: A0A0A0KFQ1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374720 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.9e-04
Identity = 35/78 (44.87%), Postives = 46/78 (58.97%), Query Frame = 0

Query: 1  MHFRVLSDVNPVSDLPPNKPVLVPAAAAAALNRPAIGYRVGGGKMKSVIPKKRKLVKTMI 60
          M FRV S  N V          +PA +  A     I Y  G G +KSVIPKKR+LVK M+
Sbjct: 1  MKFRVFSGNNQV----------IPAKSETA----TIVYG-GAGNVKSVIPKKRRLVKRMM 60

Query: 61 YHCIKDFLISLFRPSPEI 79
          Y CIK+++ SLF P+P++
Sbjct: 61 YDCIKEWIKSLFCPTPKL 63

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8647260.11.2e-1563.10hypothetical protein Csa_018328, partial [Cucumis sativus][more]
XP_022141661.11.1e-1055.95uncharacterized protein LOC111011963 [Momordica charantia][more]
KAG6602134.13.3e-1061.90hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK18680.11.3e-0957.69hypothetical protein E5676_scaffold481G00190 [Cucumis melo var. makuwa][more]
KAG6602131.12.1e-0960.00hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KDQ75.7e-1663.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1[more]
A0A6J1CJW35.5e-1155.95uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A5D3D5906.1e-1057.69Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KH012.2e-0450.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1[more]
A0A0A0KFQ12.9e-0444.87Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374720 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10003945.1HG10003945.1mRNA