HG10003740 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10003740
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionProtein FAR1-RELATED SEQUENCE 3-like
LocationChr08: 7658382 .. 7658678 (+)
RNA-Seq ExpressionHG10003740
SyntenyHG10003740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACATTGTTTTGCTACGGGCCATTCGATCGTCTCTGTTTATTACGATGGCTATTTCAATGAATTGGAAAACTATGTTAATTACAGAGTATCAAATGTTGTTTTACACGCGCAAATGTCCTTTCAAGAATTACAACATGATTTAATATCCAAGTTAGACGATATATTGAATATAGAGAAACTTGAGATATTTGTGTGTACAGGACATAAAGAATGTTTGAAGAAGGATTTGGGTGTTACAGATGATACTGATGTCAAATGGGTTCACCACATAATATCTGCCAATGTTGAATAA

mRNA sequence

ATGTTACATTGTTTTGCTACGGGCCATTCGATCGTCTCTGTTTATTACGATGGCTATTTCAATGAATTGGAAAACTATGTTAATTACAGAGTATCAAATGTTGTTTTACACGCGCAAATGTCCTTTCAAGAATTACAACATGATTTAATATCCAAGTTAGACGATATATTGAATATAGAGAAACTTGAGATATTTGTGTGTACAGGACATAAAGAATGTTTGAAGAAGGATTTGGGTGTTACAGATGATACTGATGTCAAATGGGTTCACCACATAATATCTGCCAATGTTGAATAA

Coding sequence (CDS)

ATGTTACATTGTTTTGCTACGGGCCATTCGATCGTCTCTGTTTATTACGATGGCTATTTCAATGAATTGGAAAACTATGTTAATTACAGAGTATCAAATGTTGTTTTACACGCGCAAATGTCCTTTCAAGAATTACAACATGATTTAATATCCAAGTTAGACGATATATTGAATATAGAGAAACTTGAGATATTTGTGTGTACAGGACATAAAGAATGTTTGAAGAAGGATTTGGGTGTTACAGATGATACTGATGTCAAATGGGTTCACCACATAATATCTGCCAATGTTGAATAA

Protein sequence

MLHCFATGHSIVSVYYDGYFNELENYVNYRVSNVVLHAQMSFQELQHDLISKLDDILNIEKLEIFVCTGHKECLKKDLGVTDDTDVKWVHHIISANVE
Homology
BLAST of HG10003740 vs. NCBI nr
Match: XP_038889205.1 (probable polygalacturonase At1g80170 [Benincasa hispida])

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-10
Identity = 33/85 (38.82%), Postives = 55/85 (64.71%), Query Frame = 0

Query: 12  VSVYYDGYFNELENY-VNYRVSNVVLHAQMSFQELQHDLISKLDDILNIEKLEIFVCTGH 71
           V + YD  FNE +NY ++Y+V+ +  H QMSF E Q  ++ K+  + N   +EI  C G 
Sbjct: 422 VPILYDSRFNERDNYIIDYKVAEIDFHDQMSFLEFQQLVVDKISSVGNCGNVEIIACVGS 481

Query: 72  KECLKKDLGVTDDTDVKWVHHIISA 96
           K+ +KKDL + +D D++W+ ++IS+
Sbjct: 482 KDFIKKDLKLREDNDIRWLFYLISS 506

BLAST of HG10003740 vs. NCBI nr
Match: XP_022155207.1 (uncharacterized protein LOC111022347 [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-07
Identity = 27/82 (32.93%), Postives = 58/82 (70.73%), Query Frame = 0

Query: 12 VSVYYDGYFNELENYVNYRVSNVVLHAQMSFQELQHDLISKLDDILNIEKLEIFVCTGHK 71
          +S+++ G++N+ +NYV Y+VS +++H +MS+ +L  D++ +L  + + +  +IF C G  
Sbjct: 1  MSMFHGGFWNDRDNYVEYKVSELIIHQEMSYAKLLKDIMEQLGLVGSSDYPDIFSCIGTT 60

Query: 72 ECLKKDLGVTDDTDVKWVHHII 94
          + + KD+ ++DD DV W++++I
Sbjct: 61 QFM-KDMKISDDKDVHWLYNVI 81

BLAST of HG10003740 vs. NCBI nr
Match: KAA0062727.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-05
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 45 LQHDLISKLDDILNIEKLEIFVCTGHKECLKKDLGVTDDTDVKWVHHIISANVE 99
          +   L S L  I+++  ++I++C G  EC KKDL + +D DVKWV+HII++NVE
Sbjct: 1  MYRSLRSMLTSIIDMNNIDIYLCLGPIECGKKDLAIRNDNDVKWVYHIITSNVE 54

BLAST of HG10003740 vs. NCBI nr
Match: TYK22525.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 1.6e-05
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 45 LQHDLISKLDDILNIEKLEIFVCTGHKECLKKDLGVTDDTDVKWVHHIISANVE 99
          +   L S L  I+++  ++I++C G  EC KKDL + +D DVKWV+HII++NVE
Sbjct: 1  MYRSLRSMLTSIIDMNNIDIYLCLGPIECGKKDLAIRNDNDVKWVYHIITSNVE 54

BLAST of HG10003740 vs. ExPASy TrEMBL
Match: A0A6J1DNQ8 (uncharacterized protein LOC111022347 OS=Momordica charantia OX=3673 GN=LOC111022347 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.5e-08
Identity = 27/82 (32.93%), Postives = 58/82 (70.73%), Query Frame = 0

Query: 12 VSVYYDGYFNELENYVNYRVSNVVLHAQMSFQELQHDLISKLDDILNIEKLEIFVCTGHK 71
          +S+++ G++N+ +NYV Y+VS +++H +MS+ +L  D++ +L  + + +  +IF C G  
Sbjct: 1  MSMFHGGFWNDRDNYVEYKVSELIIHQEMSYAKLLKDIMEQLGLVGSSDYPDIFSCIGTT 60

Query: 72 ECLKKDLGVTDDTDVKWVHHII 94
          + + KD+ ++DD DV W++++I
Sbjct: 61 QFM-KDMKISDDKDVHWLYNVI 81

BLAST of HG10003740 vs. ExPASy TrEMBL
Match: A0A5A7V6U1 (Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold382G00560 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.9e-06
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 45 LQHDLISKLDDILNIEKLEIFVCTGHKECLKKDLGVTDDTDVKWVHHIISANVE 99
          +   L S L  I+++  ++I++C G  EC KKDL + +D DVKWV+HII++NVE
Sbjct: 1  MYRSLRSMLTSIIDMNNIDIYLCLGPIECGKKDLAIRNDNDVKWVYHIITSNVE 54

BLAST of HG10003740 vs. ExPASy TrEMBL
Match: A0A5D3DG45 (Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold523G00050 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.9e-06
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 0

Query: 45 LQHDLISKLDDILNIEKLEIFVCTGHKECLKKDLGVTDDTDVKWVHHIISANVE 99
          +   L S L  I+++  ++I++C G  EC KKDL + +D DVKWV+HII++NVE
Sbjct: 1  MYRSLRSMLTSIIDMNNIDIYLCLGPIECGKKDLAIRNDNDVKWVYHIITSNVE 54

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038889205.11.7e-1038.82probable polygalacturonase At1g80170 [Benincasa hispida][more]
XP_022155207.11.7e-0732.93uncharacterized protein LOC111022347 [Momordica charantia][more]
KAA0062727.11.6e-0546.30protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa][more]
TYK22525.11.6e-0546.30protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DNQ88.5e-0832.93uncharacterized protein LOC111022347 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A5A7V6U17.9e-0646.30Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3DG457.9e-0646.30Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10003740.1HG10003740.1mRNA