HG10003689 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10003689
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionproline-rich protein 36-like
LocationChr08: 5827560 .. 5827757 (-)
RNA-Seq ExpressionHG10003689
SyntenyHG10003689
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAACAACAACGCCAATGCCAAAGCTCGCCGTCCACGGCGGTCAAGGAATGCTGGCAGTGGCGGTCAGATTAACCGTCTTTCTCAGTCAGCTCGAAAGACCGGCGGTAGTCAAACCAACCGTGTTTCTCCGCCGAAGATGAGTACTGGCGGCGGCGGTCAGACAAACTAA

mRNA sequence

ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAACAACAACGCCAATGCCAAAGCTCGCCGTCCACGGCGGTCAAGGAATGCTGGCAGTGGCGGTCAGATTAACCGTCTTTCTCAGTCAGCTCGAAAGACCGGCGGTAGTCAAACCAACCGTGTTTCTCCGCCGAAGATGAGTACTGGCGGCGGCGGTCAGACAAACTAA

Coding sequence (CDS)

ATGGAGTCTTCAAGTTCAAGTCTTCAAAAGAACAACAACGCCAATGCCAAAGCTCGCCGTCCACGGCGGTCAAGGAATGCTGGCAGTGGCGGTCAGATTAACCGTCTTTCTCAGTCAGCTCGAAAGACCGGCGGTAGTCAAACCAACCGTGTTTCTCCGCCGAAGATGAGTACTGGCGGCGGCGGTCAGACAAACTAA

Protein sequence

MESSSSSLQKNNNANAKARRPRRSRNAGSGGQINRLSQSARKTGGSQTNRVSPPKMSTGGGGQTN
Homology
BLAST of HG10003689 vs. NCBI nr
Match: KAA0048493.1 (hypothetical protein E6C27_scaffold61G001060 [Cucumis melo var. makuwa] >TYK28285.1 hypothetical protein E5676_scaffold600G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 2.2e-06
Identity = 44/68 (64.71%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 1  MESSSSSLQK--NNNANAKARRPRRSRNAGSGGQIN-RLSQSARKTGGSQTNRVSPPKMS 60
          MESSSSSLQK  NN++NAKA R R + NAG G  IN R S+  R+T GS+ NR  PPK S
Sbjct: 1  MESSSSSLQKINNNDSNAKAPRLRLTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKKS 60

Query: 61 TGGGGQTN 66
          TGGGGQTN
Sbjct: 61 TGGGGQTN 68

BLAST of HG10003689 vs. NCBI nr
Match: KAE8646590.1 (hypothetical protein Csa_005634, partial [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 3.2e-05
Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = 0

Query: 1  MESSSSSLQKNNNANAKARRPRRSRNAGSGGQINRL-SQSARKTGGSQTNRVSPPKMSTG 60
          MESSSSSL+KNNN NAKA R R S NAG G QINR  S+  ++   S+TNR  PPK STG
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GG 62
          GG
Sbjct: 61 GG 62

BLAST of HG10003689 vs. NCBI nr
Match: XP_022930152.1 (proline-rich protein 36-like [Cucurbita moschata])

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-04
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 1  MESSSSSLQKNNNANAKARRPRRSRNAGSGGQINRLSQSARKTGGSQTNRVSPPKMSTGG 60
          ME SSS+LQ +NN NAKA   RR RN   G QINRLS  +R+  G+ TNR  PPK STGG
Sbjct: 1  MEVSSSTLQNSNNDNAKASYLRRRRNTVGGTQINRLSGPSRRANGTPTNRGPPPKKSTGG 60

Query: 61 G 62
          G
Sbjct: 61 G 61

BLAST of HG10003689 vs. ExPASy TrEMBL
Match: A0A0A0KAN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020130 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.6e-08
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 0

Query: 1  MESSSSSLQKNNNANAKARRPRRSRNAGSGGQINRL-SQSARKTGGSQTNRVSPPKMSTG 60
          MESSSSSL+KNNN NAKA R R S NAG G QINR  S+  ++   S+TNR  PPK STG
Sbjct: 1  MESSSSSLRKNNNDNAKAPRLRLSMNAGDGTQINRRHSRPLQRNRNSKTNRAPPPKKSTG 60

Query: 61 GGGQTN 66
          GGGQTN
Sbjct: 61 GGGQTN 66

BLAST of HG10003689 vs. ExPASy TrEMBL
Match: A0A5D3DY74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001020 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 44/68 (64.71%), Postives = 50/68 (73.53%), Query Frame = 0

Query: 1  MESSSSSLQK--NNNANAKARRPRRSRNAGSGGQIN-RLSQSARKTGGSQTNRVSPPKMS 60
          MESSSSSLQK  NN++NAKA R R + NAG G  IN R S+  R+T GS+ NR  PPK S
Sbjct: 1  MESSSSSLQKINNNDSNAKAPRLRLTMNAGDGAHINPRHSRPPRRTRGSKINRAPPPKKS 60

Query: 61 TGGGGQTN 66
          TGGGGQTN
Sbjct: 61 TGGGGQTN 68

BLAST of HG10003689 vs. ExPASy TrEMBL
Match: A0A6J1EPK7 (proline-rich protein 36-like OS=Cucurbita moschata OX=3662 GN=LOC111436664 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 5.8e-05
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 0

Query: 1  MESSSSSLQKNNNANAKARRPRRSRNAGSGGQINRLSQSARKTGGSQTNRVSPPKMSTGG 60
          ME SSS+LQ +NN NAKA   RR RN   G QINRLS  +R+  G+ TNR  PPK STGG
Sbjct: 1  MEVSSSTLQNSNNDNAKASYLRRRRNTVGGTQINRLSGPSRRANGTPTNRGPPPKKSTGG 60

Query: 61 G 62
          G
Sbjct: 61 G 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0048493.12.2e-0664.71hypothetical protein E6C27_scaffold61G001060 [Cucumis melo var. makuwa] >TYK2828... [more]
KAE8646590.13.2e-0564.52hypothetical protein Csa_005634, partial [Cucumis sativus][more]
XP_022930152.11.2e-0460.66proline-rich protein 36-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KAN39.6e-0866.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G020130 PE=4 SV=1[more]
A0A5D3DY741.1e-0664.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1EPK75.8e-0560.66proline-rich protein 36-like OS=Cucurbita moschata OX=3662 GN=LOC111436664 PE=4 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10003689.1HG10003689.1mRNA