HG10003635 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10003635
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionUnknown protein
LocationChr08: 4704816 .. 4705115 (-)
RNA-Seq ExpressionHG10003635
SyntenyHG10003635
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGCAATAACAGGCAAAATAAAACTCACTCATCTTTTTCAATCTTCAGCATTTTCAAATCCAGAAGGAGTCGAAAAGGAGACCACTGCGACCATGATAGCTCTTGGCCAGACGAGATGCCGAGATTGAACAAGGTGTGGCCGAGTGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGACAGGATCTATCGAAACCGTGTTTTTGAATCCGAGCGCCAAACTGTCACTATAACTCCAAATGGAACAAAACTCAATGTGTAA

mRNA sequence

ATGGGAGGCAATAACAGGCAAAATAAAACTCACTCATCTTTTTCAATCTTCAGCATTTTCAAATCCAGAAGGAGTCGAAAAGGAGACCACTGCGACCATGATAGCTCTTGGCCAGACGAGATGCCGAGATTGAACAAGGTGTGGCCGAGTGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGACAGGATCTATCGAAACCGTGTTTTTGAATCCGAGCGCCAAACTGTCACTATAACTCCAAATGGAACAAAACTCAATGTGTAA

Coding sequence (CDS)

ATGGGAGGCAATAACAGGCAAAATAAAACTCACTCATCTTTTTCAATCTTCAGCATTTTCAAATCCAGAAGGAGTCGAAAAGGAGACCACTGCGACCATGATAGCTCTTGGCCAGACGAGATGCCGAGATTGAACAAGGTGTGGCCGAGTGATGAGGACAAACCTCATCATTGGGTTGCTGAACCTGGTATTGATAGAAAGGCCAAAGATTACATTGACAGGATCTATCGAAACCGTGTTTTTGAATCCGAGCGCCAAACTGTCACTATAACTCCAAATGGAACAAAACTCAATGTGTAA

Protein sequence

MGGNNRQNKTHSSFSIFSIFKSRRSRKGDHCDHDSSWPDEMPRLNKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFESERQTVTITPNGTKLNV
Homology
BLAST of HG10003635 vs. NCBI nr
Match: KGN45870.1 (hypothetical protein Csa_004960 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 4.2e-41
Identity = 82/97 (84.54%), Postives = 87/97 (89.69%), Query Frame = 0

Query: 3   GNNRQNKTHSSFSIFSIFKSRRSRKGDHCDHDSSWPDEMPRLNKVWPSDEDKPHHWVAEP 62
           G NRQ K+HSSFSIFS FKS+R RKGDH DH  +WPDEMPR NKVWPSDEDK HHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTITPNGTKLNV 100
           GIDRKAKDYIDRIYRNRVFESERQTVTI+PNGTK NV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

BLAST of HG10003635 vs. NCBI nr
Match: KAA0035003.1 (hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343.1 hypothetical protein E5676_scaffold155G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 2.1e-40
Identity = 83/99 (83.84%), Postives = 88/99 (88.89%), Query Frame = 0

Query: 1   MGGNNRQNKTHSSFSIFSIFKSRRSRKGDHCDHDSSWPDEMPRLNKVWPSDEDKPHHWVA 60
           MGGNNRQ K+HSSFSIFS FKSRR RKGD+C+H  S  DEMPR  KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTITPNGTKLNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQT+TI+PNGTK NV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

BLAST of HG10003635 vs. NCBI nr
Match: KGN45869.1 (hypothetical protein Csa_005516 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 3.5e-40
Identity = 83/99 (83.84%), Postives = 86/99 (86.87%), Query Frame = 0

Query: 1   MGGNNRQNKTHSSFSIFSIFKSRRSRKGDHCDHDSSWPDEMPRLNKVWPSDEDKPHHWVA 60
           MGGNNRQ K H+SFSIFS FKSRR RKGDHC+H  S  DEMPR  KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTITPNGTKLNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQTVTI+PNG K NV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

BLAST of HG10003635 vs. NCBI nr
Match: KAG6592306.1 (hypothetical protein SDJN03_14652, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 165.2 bits (417), Expect = 2.8e-37
Identity = 79/98 (80.61%), Postives = 83/98 (84.69%), Query Frame = 0

Query: 1  MGGNNRQNKTHSSFSIFSIFKSRRSRKGDHCDHDSSWPDEMPRLNKVWPSDEDKPHHWVA 60
          MGGNNR  K HSSFSIF+ FKS++SRK DHCDH S W DEMPR  KVWPSDEDK H WVA
Sbjct: 1  MGGNNRSKKAHSSFSIFNFFKSKKSRKEDHCDHSSCW-DEMPRSGKVWPSDEDKTHRWVA 60

Query: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTITPNGTKLN 99
          EPGIDRKAKDYIDRIYRNRVFESERQTVT+  NG KLN
Sbjct: 61 EPGIDRKAKDYIDRIYRNRVFESERQTVTLPANGIKLN 97

BLAST of HG10003635 vs. NCBI nr
Match: KAG6592308.1 (hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.9 bits (411), Expect = 1.4e-36
Identity = 77/99 (77.78%), Postives = 85/99 (85.86%), Query Frame = 0

Query: 1   MGGNNRQNKTHSSFSIFSIFKSRRSRKGDHCDHDSSWPDEMPRLNKVWPSDEDKPHHWVA 60
           MGGNNR  K HSSFSIF+ FKSRRSRK DHCDH   W DE+PR +K+WPSDEDK H WVA
Sbjct: 1   MGGNNRSKKAHSSFSIFNFFKSRRSRKEDHCDHSGGW-DEIPRSSKIWPSDEDKIHRWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTITPNGTKLNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQTVT+  +GTKL++
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTLPASGTKLDL 98

BLAST of HG10003635 vs. ExPASy TrEMBL
Match: A0A0A0K7Y2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.0e-41
Identity = 82/97 (84.54%), Postives = 87/97 (89.69%), Query Frame = 0

Query: 3   GNNRQNKTHSSFSIFSIFKSRRSRKGDHCDHDSSWPDEMPRLNKVWPSDEDKPHHWVAEP 62
           G NRQ K+HSSFSIFS FKS+R RKGDH DH  +WPDEMPR NKVWPSDEDK HHW+AEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSKRGRKGDHYDHGGAWPDEMPRSNKVWPSDEDKAHHWIAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTITPNGTKLNV 100
           GIDRKAKDYIDRIYRNRVFESERQTVTI+PNGTK NV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

BLAST of HG10003635 vs. ExPASy TrEMBL
Match: A0A5A7SWT9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00350 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.0e-40
Identity = 83/99 (83.84%), Postives = 88/99 (88.89%), Query Frame = 0

Query: 1   MGGNNRQNKTHSSFSIFSIFKSRRSRKGDHCDHDSSWPDEMPRLNKVWPSDEDKPHHWVA 60
           MGGNNRQ K+HSSFSIFS FKSRR RKGD+C+H  S  DEMPR  KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKSHSSFSIFSFFKSRRGRKGDNCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTITPNGTKLNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQT+TI+PNGTK NV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTITISPNGTKSNV 99

BLAST of HG10003635 vs. ExPASy TrEMBL
Match: A0A0A0KBW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.0e-40
Identity = 83/97 (85.57%), Postives = 86/97 (88.66%), Query Frame = 0

Query: 3   GNNRQNKTHSSFSIFSIFKSRRSRKGDHCDHDSSWPDEMPRLNKVWPSDEDKPHHWVAEP 62
           G NRQ K+HSSFSIFS FKSRR RKGDH DH  +W DEMPR NKVWPSDEDK HHWVAEP
Sbjct: 2   GGNRQKKSHSSFSIFSFFKSRRGRKGDHYDHGGAWLDEMPRSNKVWPSDEDKAHHWVAEP 61

Query: 63  GIDRKAKDYIDRIYRNRVFESERQTVTITPNGTKLNV 100
           GIDRKAKDYIDRIYRNRVFESERQTVTI+PNGTK NV
Sbjct: 62  GIDRKAKDYIDRIYRNRVFESERQTVTISPNGTKSNV 98

BLAST of HG10003635 vs. ExPASy TrEMBL
Match: A0A0A0KAK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.7e-40
Identity = 83/99 (83.84%), Postives = 86/99 (86.87%), Query Frame = 0

Query: 1   MGGNNRQNKTHSSFSIFSIFKSRRSRKGDHCDHDSSWPDEMPRLNKVWPSDEDKPHHWVA 60
           MGGNNRQ K H+SFSIFS FKSRR RKGDHC+H  S  DEMPR  KVWPSDEDK HHWVA
Sbjct: 1   MGGNNRQKKAHASFSIFSFFKSRRGRKGDHCNHSGSCLDEMPRSGKVWPSDEDKAHHWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTITPNGTKLNV 100
           EPGIDRKAKDYIDRIYRNRVFESERQTVTI+PNG K NV
Sbjct: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTISPNGIKSNV 99

BLAST of HG10003635 vs. ExPASy TrEMBL
Match: A0A0A0K8W0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.3e-32
Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = 0

Query: 1   MGGNNRQNKTHSSFSIFSIFKSRRSRKGDHCDHDSSWPDEMPRLNKVWPSDEDKPHHWVA 60
           MGG++RQ KTHSSFSIFS FKS+R RKGD  +H ++W D +P  +KVWPSDEDK + WVA
Sbjct: 1   MGGSHRQKKTHSSFSIFSFFKSKRGRKGDVYEHGTNWED-VPSSSKVWPSDEDKGYRWVA 60

Query: 61  EPGIDRKAKDYIDRIYRNRVFESERQTVTITPNGTKLNV 100
           EPGIDRKAKDYIDRIY+NRVFE+ERQTVTI PNG   NV
Sbjct: 61  EPGIDRKAKDYIDRIYKNRVFETERQTVTIHPNGPNSNV 98

BLAST of HG10003635 vs. TAIR 10
Match: AT3G05858.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G26620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 74.7 bits (182), Expect = 4.6e-14
Identity = 47/91 (51.65%), Postives = 59/91 (64.84%), Query Frame = 0

Query: 1  MGGNNRQNKTHSS--FSIFSIFKSRRSRKGDHCDHDSSWPDEMPRLNKVWPSDEDKPHHW 60
          MGG NR   +HSS  FS+FS FK+RRS +    + D SW D+     K   SDEDK  +W
Sbjct: 1  MGGKNR---SHSSKRFSLFSFFKTRRSHR---VEADGSW-DDFGYTRKAMASDEDK-RYW 60

Query: 61 VAEPGIDRKAKDYIDRIYRNRVFESERQTVT 90
          VAEPGIDRKA  +I + +  RV ESERQT++
Sbjct: 61 VAEPGIDRKASAFIAKFHATRVSESERQTLS 83

BLAST of HG10003635 vs. TAIR 10
Match: AT5G26620.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05858.1); Has 48 Blast hits to 48 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 48; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 5.3e-10
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 0

Query: 25 SRKGDH--CDHDSSWPDEMPRLNKVWPSDEDKPHHWVAEPGIDRKAKDYIDRIYRNRVFE 84
          +R+  H   + D+SW D++    K W SDEDK  +WVAEPGIDRKA  +I + + +RV E
Sbjct: 3  ARRSSHHRVEADASW-DDVIYTRKAWASDEDK-RYWVAEPGIDRKASAFIAKFHASRVSE 62

Query: 85 SERQTV 89
          SERQT+
Sbjct: 63 SERQTL 66

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN45870.14.2e-4184.54hypothetical protein Csa_004960 [Cucumis sativus][more]
KAA0035003.12.1e-4083.84hypothetical protein E6C27_scaffold57G00440 [Cucumis melo var. makuwa] >TYK02343... [more]
KGN45869.13.5e-4083.84hypothetical protein Csa_005516 [Cucumis sativus][more]
KAG6592306.12.8e-3780.61hypothetical protein SDJN03_14652, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6592308.11.4e-3677.78hypothetical protein SDJN03_14654, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K7Y22.0e-4184.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014900 PE=4 SV=1[more]
A0A5A7SWT91.0e-4083.84Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KBW11.0e-4085.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014870 PE=4 SV=1[more]
A0A0A0KAK61.7e-4083.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G014890 PE=4 SV=1[more]
A0A0A0K8W01.3e-3272.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G016905 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G05858.14.6e-1451.65unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G26620.15.3e-1050.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33511OS06G0632400 PROTEINcoord: 1..89
NoneNo IPR availablePANTHERPTHR33511:SF17RIBOSOMAL PROTEIN S12coord: 1..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10003635.1HG10003635.1mRNA