HG10003372 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10003372
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionSTOREKEEPER protein-like
LocationChr08: 206611 .. 207210 (-)
RNA-Seq ExpressionHG10003372
SyntenyHG10003372
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGAAGAAAATGAGAGAAAAAGGAGTTCATTGGGACAAGAAAAGAAGAAAAGGAGGAAGAGTTCGTTTGAATGGAGTAAAGGGGAAGAGGTAAATCTATTGAAGAAGCTGGTTGAGTTCCGTACAAAGAAGATGGCTGACGAAGAATTTTATCCGTTTTTGAGAGATGGGTCATTGGCTGAGGTGTCCAAGATTCAAATATTCAACAAGATTCAACAACTCAAAAGGGAATATTTGGAGAAGAAATTAGAGTTGAGAAAAATGAGAATGCAATATTTGAAATACGACGACGACGACGAGGGTTTTGAGTTATCAAATCGACTTTGGGGTGAAGTTGAAACCGGAAGTGCTTCTACCTCTAAAGCATTGGATGTGTGTAGTAGGAGTTATTTTGAAGGCTTTTTTGATGGTCATGGGCTTCATATACAACTATTTACGCCATCTTTTCTCGATGCAACCAACAAGGACATCCACCATTTGTTTTCTCTTCAAAATCATCATTTCTTAATCAAAGCTAACTTGAAGGCTCAACTTGCTCAACTAAAGTACGACATCATTCAAGCTCGTGATTTCAACAATCCTACCAATGATCAATAA

mRNA sequence

ATGGGGGAAGAAAATGAGAGAAAAAGGAGTTCATTGGGACAAGAAAAGAAGAAAAGGAGGAAGAGTTCGTTTGAATGGAGTAAAGGGGAAGAGGTAAATCTATTGAAGAAGCTGGTTGAGTTCCGTACAAAGAAGATGGCTGACGAAGAATTTTATCCGTTTTTGAGAGATGGGTCATTGGCTGAGGTGTCCAAGATTCAAATATTCAACAAGATTCAACAACTCAAAAGGGAATATTTGGAGAAGAAATTAGAGTTGAGAAAAATGAGAATGCAATATTTGAAATACGACGACGACGACGAGGGTTTTGAGTTATCAAATCGACTTTGGGGTGAAGTTGAAACCGGAAGTGCTTCTACCTCTAAAGCATTGGATGTGTGTAGTAGGAGTTATTTTGAAGGCTTTTTTGATGGTCATGGGCTTCATATACAACTATTTACGCCATCTTTTCTCGATGCAACCAACAAGGACATCCACCATTTGTTTTCTCTTCAAAATCATCATTTCTTAATCAAAGCTAACTTGAAGGCTCAACTTGCTCAACTAAAGTACGACATCATTCAAGCTCGTGATTTCAACAATCCTACCAATGATCAATAA

Coding sequence (CDS)

ATGGGGGAAGAAAATGAGAGAAAAAGGAGTTCATTGGGACAAGAAAAGAAGAAAAGGAGGAAGAGTTCGTTTGAATGGAGTAAAGGGGAAGAGGTAAATCTATTGAAGAAGCTGGTTGAGTTCCGTACAAAGAAGATGGCTGACGAAGAATTTTATCCGTTTTTGAGAGATGGGTCATTGGCTGAGGTGTCCAAGATTCAAATATTCAACAAGATTCAACAACTCAAAAGGGAATATTTGGAGAAGAAATTAGAGTTGAGAAAAATGAGAATGCAATATTTGAAATACGACGACGACGACGAGGGTTTTGAGTTATCAAATCGACTTTGGGGTGAAGTTGAAACCGGAAGTGCTTCTACCTCTAAAGCATTGGATGTGTGTAGTAGGAGTTATTTTGAAGGCTTTTTTGATGGTCATGGGCTTCATATACAACTATTTACGCCATCTTTTCTCGATGCAACCAACAAGGACATCCACCATTTGTTTTCTCTTCAAAATCATCATTTCTTAATCAAAGCTAACTTGAAGGCTCAACTTGCTCAACTAAAGTACGACATCATTCAAGCTCGTGATTTCAACAATCCTACCAATGATCAATAA

Protein sequence

MGEENERKRSSLGQEKKKRRKSSFEWSKGEEVNLLKKLVEFRTKKMADEEFYPFLRDGSLAEVSKIQIFNKIQQLKREYLEKKLELRKMRMQYLKYDDDDEGFELSNRLWGEVETGSASTSKALDVCSRSYFEGFFDGHGLHIQLFTPSFLDATNKDIHHLFSLQNHHFLIKANLKAQLAQLKYDIIQARDFNNPTNDQ
Homology
BLAST of HG10003372 vs. NCBI nr
Match: KAA0054121.1 (hypothetical protein E6C27_scaffold131G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 263.1 bits (671), Expect = 2.0e-66
Identity = 145/205 (70.73%), Postives = 167/205 (81.46%), Query Frame = 0

Query: 1   MGEENERKRSSLGQEKKKRRKSSFEWSKGEEVNLLKKLVEFRTKKMADEEFYPFLRDGSL 60
           M EE ER++SSLG EKKKRRKS FEWSKGEE+NLLKKLVEF +K ++ EEFYPFLR+GSL
Sbjct: 53  MEEEKERRKSSLGSEKKKRRKSLFEWSKGEELNLLKKLVEFNSKNISREEFYPFLRNGSL 112

Query: 61  AEVSKIQIFNKIQQLKREYLEKKLELRKMRMQYLKYDDD-------DEGFELSNRLWGEV 120
           AEVSKIQIF+KIQQLK EYLE KLELRKMR + +K +DD       DEGFELSN+LWGEV
Sbjct: 113 AEVSKIQIFDKIQQLKSEYLENKLELRKMRKRNVKLEDDDDYNDKRDEGFELSNQLWGEV 172

Query: 121 -ETGSASTSKALDVCSRSYFEGFFDGHGLHIQLFTPSFLDATNKDIHHLFSLQNHHFLIK 180
            ET  AS SKAL+VCSR+Y+EGFF+  GL +QLF PSF DAT KDI HLF+L++H  L K
Sbjct: 173 DETERASNSKALEVCSRNYYEGFFESCGLDVQLFDPSFHDATKKDIDHLFNLEHHVILSK 232

Query: 181 ANLKAQLAQLKYDIIQARDFNNPTN 198
           A L AQ+ QLKYD+IQAR  NNPTN
Sbjct: 233 AKLTAQILQLKYDLIQAR-VNNPTN 256

BLAST of HG10003372 vs. NCBI nr
Match: KAG6585881.1 (hypothetical protein SDJN03_18614, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 193.7 bits (491), Expect = 1.5e-45
Identity = 113/202 (55.94%), Postives = 140/202 (69.31%), Query Frame = 0

Query: 7   RKRSSLGQE---KKKRRKSSFEWSKGEEVNLLKKLVEFRTKKMADEEFYPFLRDGSLAEV 66
           RKR  + ++   ++K+ K+ F+WS+GEE+NLL KLVEF    +  E+FYPFLR GSLA+V
Sbjct: 2   RKRKDIIKDTSTRQKKAKTLFQWSEGEELNLLNKLVEFSANNLDHEQFYPFLRSGSLADV 61

Query: 67  SKIQIFNKIQQLKREYLEKKLELRKMRMQYLKYDDD-----DEGFELSNRLWG----EVE 126
            KIQIF+KIQQLKR++LEK     + R+Q + + DD     DE FELSNRLWG    E E
Sbjct: 62  PKIQIFDKIQQLKRKHLEK----LESRVQMVSHADDERNERDESFELSNRLWGENEIETE 121

Query: 127 TGSASTSKALDVCSRSYFEGFFDGHGLHIQLFTPSFLDATNKDIHHLFSLQNHHFLIKAN 186
           T + STSKA D  S S FE  F+GH LH+  FTPSFL AT K++  L  LQNHH LIKAN
Sbjct: 122 TQNVSTSKAFDAWSMSSFEALFEGHSLHLDAFTPSFLKATKKEMDELLDLQNHHSLIKAN 181

Query: 187 LKAQLAQLKYDIIQARDFNNPT 197
           LKAQLAQLK+ + Q R F N T
Sbjct: 182 LKAQLAQLKHHLTQTR-FENST 198

BLAST of HG10003372 vs. NCBI nr
Match: KGN49711.1 (hypothetical protein Csa_018385 [Cucumis sativus])

HSP 1 Score: 173.3 bits (438), Expect = 2.1e-39
Identity = 109/205 (53.17%), Postives = 134/205 (65.37%), Query Frame = 0

Query: 1   MGEENERKRSSLGQEKKKRRKSSFEWSKGEEVNLLKKLVEFRTKKMADEEFYPFLRDGSL 60
           M E  E ++ S G  KKKRRKS FEWSKGEE+NLLKKLVEF TK ++ EEFYPFLR+GSL
Sbjct: 1   MEEGKEGRKRSTGSGKKKRRKSLFEWSKGEELNLLKKLVEFNTKNISREEFYPFLRNGSL 60

Query: 61  AEVSKIQIFNKIQQLKREYLEKKLELRKMRMQYLKYDDD-------DEGFELSNRLWGEV 120
           AEVS+ QIF KIQ+LKREYL++KLELRKMR + +K +DD       DEGFELSN +WG+V
Sbjct: 61  AEVSRTQIFEKIQELKREYLKQKLELRKMRKRNVKMEDDDDFNNKRDEGFELSNEVWGKV 120

Query: 121 -ETGSASTSKALDVCSRSYFEGFFDGHGLHIQLFTPSFLDATNKDIHHLFSLQNHHFLIK 180
            ET  AS SK L+                          DA  KDI  LF+L++  FL K
Sbjct: 121 DETERASISKVLE--------------------------DAAKKDIDRLFNLEHQAFLFK 178

Query: 181 ANLKAQLAQLKYDIIQARDFNNPTN 198
           + L ++L +LK DIIQA    +PT+
Sbjct: 181 SKLVSKLVKLKNDIIQA-PITDPTH 178

BLAST of HG10003372 vs. NCBI nr
Match: KAG6575378.1 (hypothetical protein SDJN03_26017, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.7 bits (221), Expect = 3.0e-14
Identity = 49/91 (53.85%), Postives = 61/91 (67.03%), Query Frame = 0

Query: 100 DEGFELSNRLWG--EVETGSASTSKALDVCSRSYFEGFFDGHGLHIQLFTPSFLDATNKD 159
           DE FELS R  G  E+ET S S S  L+V ++  FE   + H L + LF PS LDA  K+
Sbjct: 6   DEVFELSKRFSGENEIETQSGSASTILEVSNKRNFEALLERHRLRLDLFIPSDLDAIKKE 65

Query: 160 IHHLFSLQNHHFLIKANLKAQLAQLKYDIIQ 189
           +  LF LQN + LIKANLKAQLAQLK+DI++
Sbjct: 66  VDELFYLQNQYSLIKANLKAQLAQLKHDIVR 96

BLAST of HG10003372 vs. NCBI nr
Match: XP_022158998.1 (probable transcription factor At4g01260 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 3.0e-06
Identity = 51/191 (26.70%), Postives = 98/191 (51.31%), Query Frame = 0

Query: 3   EENERKRSSLG--QEKKKRRKSSFEWSKGEEVNLLKKLVEFRTKKMA-DEEFYPFLRDGS 62
           E++E K SS    +E KK +K  F WS  +E  +LK   EF  K  +  ++FY F+++  
Sbjct: 39  EKDEEKCSSPNSKEESKKSKKMGFHWSWSDECVILKNFYEFAGKNGSYSKDFYHFVKNKL 98

Query: 63  LAEVSKIQIFNKIQQLKREYLEKKLELRKMRMQYLKYDDDDEGFELSNRLWGEVET---- 122
             +VS  Q+ +K+ +L++ +L+ + +  K+RM++ K +  ++ +E+SN +WG        
Sbjct: 99  SVDVSNSQLSDKVYRLRKRFLKDECK-GKIRMKFSKGNQLEKLYEMSNNIWGSNSNTQNT 158

Query: 123 ---GSASTSKALDVCSRSYFEGFFDGHGLHIQLFTPSFLDATNKDIHHLFSLQNHHFLIK 182
              G+   ++A++      FE   +   + I    P+ L    KD   +   Q+ + L  
Sbjct: 159 QSGGNQWKAEAVNRLCEEMFERVIENVKVDISCIPPNVLXDIRKDWEQMKMAQDEYELKN 218

Query: 183 ANLKAQLAQLK 184
           ANL  Q++ ++
Sbjct: 219 ANLLLQISHIR 228

BLAST of HG10003372 vs. ExPASy TrEMBL
Match: A0A5A7UKP8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00330 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 9.6e-67
Identity = 145/205 (70.73%), Postives = 167/205 (81.46%), Query Frame = 0

Query: 1   MGEENERKRSSLGQEKKKRRKSSFEWSKGEEVNLLKKLVEFRTKKMADEEFYPFLRDGSL 60
           M EE ER++SSLG EKKKRRKS FEWSKGEE+NLLKKLVEF +K ++ EEFYPFLR+GSL
Sbjct: 53  MEEEKERRKSSLGSEKKKRRKSLFEWSKGEELNLLKKLVEFNSKNISREEFYPFLRNGSL 112

Query: 61  AEVSKIQIFNKIQQLKREYLEKKLELRKMRMQYLKYDDD-------DEGFELSNRLWGEV 120
           AEVSKIQIF+KIQQLK EYLE KLELRKMR + +K +DD       DEGFELSN+LWGEV
Sbjct: 113 AEVSKIQIFDKIQQLKSEYLENKLELRKMRKRNVKLEDDDDYNDKRDEGFELSNQLWGEV 172

Query: 121 -ETGSASTSKALDVCSRSYFEGFFDGHGLHIQLFTPSFLDATNKDIHHLFSLQNHHFLIK 180
            ET  AS SKAL+VCSR+Y+EGFF+  GL +QLF PSF DAT KDI HLF+L++H  L K
Sbjct: 173 DETERASNSKALEVCSRNYYEGFFESCGLDVQLFDPSFHDATKKDIDHLFNLEHHVILSK 232

Query: 181 ANLKAQLAQLKYDIIQARDFNNPTN 198
           A L AQ+ QLKYD+IQAR  NNPTN
Sbjct: 233 AKLTAQILQLKYDLIQAR-VNNPTN 256

BLAST of HG10003372 vs. ExPASy TrEMBL
Match: A0A0A0KPQ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G078280 PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.0e-39
Identity = 109/205 (53.17%), Postives = 134/205 (65.37%), Query Frame = 0

Query: 1   MGEENERKRSSLGQEKKKRRKSSFEWSKGEEVNLLKKLVEFRTKKMADEEFYPFLRDGSL 60
           M E  E ++ S G  KKKRRKS FEWSKGEE+NLLKKLVEF TK ++ EEFYPFLR+GSL
Sbjct: 1   MEEGKEGRKRSTGSGKKKRRKSLFEWSKGEELNLLKKLVEFNTKNISREEFYPFLRNGSL 60

Query: 61  AEVSKIQIFNKIQQLKREYLEKKLELRKMRMQYLKYDDD-------DEGFELSNRLWGEV 120
           AEVS+ QIF KIQ+LKREYL++KLELRKMR + +K +DD       DEGFELSN +WG+V
Sbjct: 61  AEVSRTQIFEKIQELKREYLKQKLELRKMRKRNVKMEDDDDFNNKRDEGFELSNEVWGKV 120

Query: 121 -ETGSASTSKALDVCSRSYFEGFFDGHGLHIQLFTPSFLDATNKDIHHLFSLQNHHFLIK 180
            ET  AS SK L+                          DA  KDI  LF+L++  FL K
Sbjct: 121 DETERASISKVLE--------------------------DAAKKDIDRLFNLEHQAFLFK 178

Query: 181 ANLKAQLAQLKYDIIQARDFNNPTN 198
           + L ++L +LK DIIQA    +PT+
Sbjct: 181 SKLVSKLVKLKNDIIQA-PITDPTH 178

BLAST of HG10003372 vs. ExPASy TrEMBL
Match: A0A6P5XDB4 (STOREKEEPER protein-like OS=Durio zibethinus OX=66656 GN=LOC111282147 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.8e-04
Identity = 31/102 (30.39%), Postives = 56/102 (54.90%), Query Frame = 0

Query: 26  WSKGEEVNLLKKLVEFRTKKMAD-----EEFYPFLRDGSLAEVSKIQIFNKIQQLKREYL 85
           WS+ +E+ +LK ++E+++KK +D       F+ F++    A+VSK Q+  KI++LK++Y 
Sbjct: 152 WSEADEIAILKGMIEYKSKKGSDPYADSSGFHDFIKQSIQADVSKYQLSEKIRRLKKKYK 211

Query: 86  EKKLELRKMRMQYLKYDDDDEGFELSNRLWGEVETGSASTSK 123
               + +           D + FELS ++WG  ET   S  +
Sbjct: 212 TNSEKCQNGNDPVFSKPHDHKSFELSKKIWGN-ETNEKSNKR 252

BLAST of HG10003372 vs. TAIR 10
Match: AT2G36340.1 (DNA-binding storekeeper protein-related transcriptional regulator )

HSP 1 Score: 42.7 bits (99), Expect = 3.9e-04
Identity = 27/99 (27.27%), Postives = 50/99 (50.51%), Query Frame = 0

Query: 22  SSFEWSKGEEVNLLKKLVEFRTKKMAD-----EEFYPFLRDGSLAEVSKIQIFNKIQQLK 81
           S   WSK +E+ +L  +V++  +         +  Y +++D   A+ SKIQ+ NK++ +K
Sbjct: 59  SKMNWSKNDELVILGGIVDYENETKLSYRSDWDALYRYIKDCVEAKFSKIQLINKVKNMK 118

Query: 82  REYLEKKLELRKMRMQYLKYDDDDEGFELSNRLWGEVET 116
           R++   +              DDDE F+LS  +W + E+
Sbjct: 119 RKFTYNQGRSNHGEQLSFTNTDDDEIFKLSLIIWDKNES 157

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0054121.12.0e-6670.73hypothetical protein E6C27_scaffold131G00330 [Cucumis melo var. makuwa][more]
KAG6585881.11.5e-4555.94hypothetical protein SDJN03_18614, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN49711.12.1e-3953.17hypothetical protein Csa_018385 [Cucumis sativus][more]
KAG6575378.13.0e-1453.85hypothetical protein SDJN03_26017, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022158998.13.0e-0626.70probable transcription factor At4g01260 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UKP89.6e-6770.73Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0KPQ51.0e-3953.17Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G078280 PE=3 SV=1[more]
A0A6P5XDB48.8e-0430.39STOREKEEPER protein-like OS=Durio zibethinus OX=66656 GN=LOC111282147 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G36340.13.9e-0427.27DNA-binding storekeeper protein-related transcriptional regulator [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 72..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
IPR007592GLABROUS1 enhancer-binding protein familyPFAMPF04504DUF573coord: 26..111
e-value: 5.8E-12
score: 46.1

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10003372.1HG10003372.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated