HG10002950 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGTTCTGTTTGAAGAGGACGCTGACGAAACTCACTGCATTTGTCCACCGCTGCCTCGTTCGCCGGCGACGTTCTCAACGGTTGAGATCATTCGTTTCTGACGATCGGAAGGTAGAGATACGGATTGTCTTGGACGATCAGAGGAGAATCGTTGAGAAGCTTGAACGTGCTGCGAATTCAAGCTACGGAAGGTGTGAACAGGATGTAGACAAGCGAGCGGAGATTTTCATCGATACTGTCCACCGTCAATTGAGGTTAGAGAGACAAACTTCTTTGCAATTGAGGTACTATAGAGTTAATAGCTCTGAAACAGAGTATGTAGAGAGATCGCCACCGAAGCCGCCGCCGCTGCCGCCGATTTTCCGTCGATTTAATGAATGA ATGGCGTTCTGTTTGAAGAGGACGCTGACGAAACTCACTGCATTTGTCCACCGCTGCCTCGTTCGCCGGCGACGTTCTCAACGGTTGAGATCATTCGTTTCTGACGATCGGAAGGTAGAGATACGGATTGTCTTGGACGATCAGAGGAGAATCGTTGAGAAGCTTGAACGTGCTGCGAATTCAAGCTACGGAAGGTGTGAACAGGATGTAGACAAGCGAGCGGAGATTTTCATCGATACTGTCCACCGTCAATTGAGGTTAGAGAGACAAACTTCTTTGCAATTGAGGTACTATAGAGTTAATAGCTCTGAAACAGAGTATGTAGAGAGATCGCCACCGAAGCCGCCGCCGCTGCCGCCGATTTTCCGTCGATTTAATGAATGA ATGGCGTTCTGTTTGAAGAGGACGCTGACGAAACTCACTGCATTTGTCCACCGCTGCCTCGTTCGCCGGCGACGTTCTCAACGGTTGAGATCATTCGTTTCTGACGATCGGAAGGTAGAGATACGGATTGTCTTGGACGATCAGAGGAGAATCGTTGAGAAGCTTGAACGTGCTGCGAATTCAAGCTACGGAAGGTGTGAACAGGATGTAGACAAGCGAGCGGAGATTTTCATCGATACTGTCCACCGTCAATTGAGGTTAGAGAGACAAACTTCTTTGCAATTGAGGTACTATAGAGTTAATAGCTCTGAAACAGAGTATGTAGAGAGATCGCCACCGAAGCCGCCGCCGCTGCCGCCGATTTTCCGTCGATTTAATGAATGA MAFCLKRTLTKLTAFVHRCLVRRRRSQRLRSFVSDDRKVEIRIVLDDQRRIVEKLERAANSSYGRCEQDVDKRAEIFIDTVHRQLRLERQTSLQLRYYRVNSSETEYVERSPPKPPPLPPIFRRFNE Homology
BLAST of HG10002950 vs. NCBI nr
Match: KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa]) HSP 1 Score: 138.7 bits (348), Expect = 3.6e-29 Identity = 82/118 (69.49%), Postives = 90/118 (76.27%), Query Frame = 0
BLAST of HG10002950 vs. NCBI nr
Match: XP_011652707.1 (uncharacterized protein LOC105435054 [Cucumis sativus]) HSP 1 Score: 124.0 bits (310), Expect = 9.2e-25 Identity = 75/118 (63.56%), Postives = 89/118 (75.42%), Query Frame = 0
BLAST of HG10002950 vs. NCBI nr
Match: KAG6596691.1 (hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028225.1 hypothetical protein SDJN02_09405, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 122.9 bits (307), Expect = 2.0e-24 Identity = 71/119 (59.66%), Postives = 87/119 (73.11%), Query Frame = 0
BLAST of HG10002950 vs. NCBI nr
Match: KAG7015798.1 (hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 110.2 bits (274), Expect = 1.4e-20 Identity = 63/113 (55.75%), Postives = 77/113 (68.14%), Query Frame = 0
BLAST of HG10002950 vs. NCBI nr
Match: KAG6577759.1 (hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 107.8 bits (268), Expect = 6.8e-20 Identity = 62/113 (54.87%), Postives = 76/113 (67.26%), Query Frame = 0
BLAST of HG10002950 vs. ExPASy TrEMBL
Match: A0A5D3CHZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00970 PE=4 SV=1) HSP 1 Score: 138.7 bits (348), Expect = 1.7e-29 Identity = 82/118 (69.49%), Postives = 90/118 (76.27%), Query Frame = 0
BLAST of HG10002950 vs. ExPASy TrEMBL
Match: A0A0A0L4Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 4.4e-25 Identity = 75/118 (63.56%), Postives = 89/118 (75.42%), Query Frame = 0
BLAST of HG10002950 vs. ExPASy TrEMBL
Match: A0A6J1CW64 (uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014780 PE=4 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 3.3e-20 Identity = 65/120 (54.17%), Postives = 80/120 (66.67%), Query Frame = 0
BLAST of HG10002950 vs. ExPASy TrEMBL
Match: A0A0A0L6A3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14 Identity = 64/127 (50.39%), Postives = 75/127 (59.06%), Query Frame = 0
BLAST of HG10002950 vs. ExPASy TrEMBL
Match: A0A6J1CVX6 (ELL-associated factor 1-like OS=Momordica charantia OX=3673 GN=LOC111014779 PE=4 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 3.2e-07 Identity = 54/132 (40.91%), Postives = 62/132 (46.97%), Query Frame = 0
BLAST of HG10002950 vs. TAIR 10
Match: AT5G57510.1 (unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04 Identity = 21/46 (45.65%), Postives = 33/46 (71.74%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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