HG10002950 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10002950
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
DescriptionELL-associated factor 1-like
LocationChr11: 15733000 .. 15733383 (-)
RNA-Seq ExpressionHG10002950
SyntenyHG10002950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTTCTGTTTGAAGAGGACGCTGACGAAACTCACTGCATTTGTCCACCGCTGCCTCGTTCGCCGGCGACGTTCTCAACGGTTGAGATCATTCGTTTCTGACGATCGGAAGGTAGAGATACGGATTGTCTTGGACGATCAGAGGAGAATCGTTGAGAAGCTTGAACGTGCTGCGAATTCAAGCTACGGAAGGTGTGAACAGGATGTAGACAAGCGAGCGGAGATTTTCATCGATACTGTCCACCGTCAATTGAGGTTAGAGAGACAAACTTCTTTGCAATTGAGGTACTATAGAGTTAATAGCTCTGAAACAGAGTATGTAGAGAGATCGCCACCGAAGCCGCCGCCGCTGCCGCCGATTTTCCGTCGATTTAATGAATGA

mRNA sequence

ATGGCGTTCTGTTTGAAGAGGACGCTGACGAAACTCACTGCATTTGTCCACCGCTGCCTCGTTCGCCGGCGACGTTCTCAACGGTTGAGATCATTCGTTTCTGACGATCGGAAGGTAGAGATACGGATTGTCTTGGACGATCAGAGGAGAATCGTTGAGAAGCTTGAACGTGCTGCGAATTCAAGCTACGGAAGGTGTGAACAGGATGTAGACAAGCGAGCGGAGATTTTCATCGATACTGTCCACCGTCAATTGAGGTTAGAGAGACAAACTTCTTTGCAATTGAGGTACTATAGAGTTAATAGCTCTGAAACAGAGTATGTAGAGAGATCGCCACCGAAGCCGCCGCCGCTGCCGCCGATTTTCCGTCGATTTAATGAATGA

Coding sequence (CDS)

ATGGCGTTCTGTTTGAAGAGGACGCTGACGAAACTCACTGCATTTGTCCACCGCTGCCTCGTTCGCCGGCGACGTTCTCAACGGTTGAGATCATTCGTTTCTGACGATCGGAAGGTAGAGATACGGATTGTCTTGGACGATCAGAGGAGAATCGTTGAGAAGCTTGAACGTGCTGCGAATTCAAGCTACGGAAGGTGTGAACAGGATGTAGACAAGCGAGCGGAGATTTTCATCGATACTGTCCACCGTCAATTGAGGTTAGAGAGACAAACTTCTTTGCAATTGAGGTACTATAGAGTTAATAGCTCTGAAACAGAGTATGTAGAGAGATCGCCACCGAAGCCGCCGCCGCTGCCGCCGATTTTCCGTCGATTTAATGAATGA

Protein sequence

MAFCLKRTLTKLTAFVHRCLVRRRRSQRLRSFVSDDRKVEIRIVLDDQRRIVEKLERAANSSYGRCEQDVDKRAEIFIDTVHRQLRLERQTSLQLRYYRVNSSETEYVERSPPKPPPLPPIFRRFNE
Homology
BLAST of HG10002950 vs. NCBI nr
Match: KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 3.6e-29
Identity = 82/118 (69.49%), Postives = 90/118 (76.27%), Query Frame = 0

Query: 1   MAFCLKRTLTKLTAFVHRCLVRRRRSQRLRSFVSDDRKVEIRIVLDDQRRIVE-----KL 60
           MA  LK+ L KLTA V  CLV RRRSQRL SF SDDRKV IRIVL+DQ RI E     KL
Sbjct: 8   MASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAENSFARKL 67

Query: 61  ERAANSSYGRCEQDVDKRAEIFIDTVHRQLRLERQTSLQLRYYRVNSSETEYVERSPP 114
           ERA++S YG  E+DVD+RAEIFI+   RQLRLERQ SLQLRYYRVNS ETEY + SPP
Sbjct: 68  ERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQISPP 125

BLAST of HG10002950 vs. NCBI nr
Match: XP_011652707.1 (uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 9.2e-25
Identity = 75/118 (63.56%), Postives = 89/118 (75.42%), Query Frame = 0

Query: 1   MAFCLKRTLTKLTAFVHRCLVRRRRSQRLRSFVS-DDRKVEIRIVLDDQRRIVE-----K 60
           MA  L++ L KL A +  CL+ R+RS+RL SF S DD+KV IRIVL+DQ RI E     K
Sbjct: 1   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 60

Query: 61  LERAANSSYGRCEQDVDKRAEIFIDTVHRQLRLERQTSLQLRYYRVNSSETEYVERSP 113
           LERA++S YG  E+DVD+RAEIFI+   RQLRLERQ SLQLRYYRVNS ETEY +RSP
Sbjct: 61  LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 118

BLAST of HG10002950 vs. NCBI nr
Match: KAG6596691.1 (hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028225.1 hypothetical protein SDJN02_09405, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-24
Identity = 71/119 (59.66%), Postives = 87/119 (73.11%), Query Frame = 0

Query: 1   MAFCLKRTLTKLTAFVHRCLVRRRRSQRLRSFVSDDRKVEIRIVLDDQR----RIVEKLE 60
           + F LK++  KLTAF+  C+ RR+ S+RLRSF SDDR   +R  L+D+R    R V KLE
Sbjct: 8   LLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGSDDRTAGLRSFLEDERIVENRSVRKLE 67

Query: 61  RAANSSYGRCEQDVDKRAEIFIDTVHRQLRLERQTSLQLRYYRVNSSETEYVERSPPKP 116
           RA+++SY   E DVDKR++IFID   RQLRLERQ SLQLRY RVNSSETE  E+SPP P
Sbjct: 68  RASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETESEEKSPPYP 126

BLAST of HG10002950 vs. NCBI nr
Match: KAG7015798.1 (hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-20
Identity = 63/113 (55.75%), Postives = 77/113 (68.14%), Query Frame = 0

Query: 5   LKRTLTKLTAFVHRCLVRRRRSQRLRSFVSDDRKVEIRIVLDDQRRI----VEKLERAAN 64
           +K+ LTKLTAFV  C V R  S+R+RSF SD R   +R +L D+  +    V KLER  +
Sbjct: 12  MKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGES 71

Query: 65  SSYGRCEQDVDKRAEIFIDTVHRQLRLERQTSLQLRYYRVNSSETEYVERSPP 114
           S  G CE DVD+RA+IFID   RQL LERQ SL+LRYY +NSSE +Y  RSPP
Sbjct: 72  SRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLRYYGINSSEIDYEARSPP 124

BLAST of HG10002950 vs. NCBI nr
Match: KAG6577759.1 (hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.8 bits (268), Expect = 6.8e-20
Identity = 62/113 (54.87%), Postives = 76/113 (67.26%), Query Frame = 0

Query: 5   LKRTLTKLTAFVHRCLVRRRRSQRLRSFVSDDRKVEIRIVLDDQRRI----VEKLERAAN 64
           +K+ LTKLTAFV  C V R  S+R+RSF SD R   +R +L D+  +    V KLER  +
Sbjct: 12  MKKALTKLTAFVRLCHVFRPPSRRMRSFDSDGRTAGLRSILGDESIVEKCSVRKLERGES 71

Query: 65  SSYGRCEQDVDKRAEIFIDTVHRQLRLERQTSLQLRYYRVNSSETEYVERSPP 114
           S  G CE DVD+RA+IFID   RQL LERQ SL+L YY +NSSE +Y  RSPP
Sbjct: 72  SRNGSCEDDVDQRAQIFIDNFRRQLMLERQISLKLMYYGINSSEIDYEARSPP 124

BLAST of HG10002950 vs. ExPASy TrEMBL
Match: A0A5D3CHZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00970 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.7e-29
Identity = 82/118 (69.49%), Postives = 90/118 (76.27%), Query Frame = 0

Query: 1   MAFCLKRTLTKLTAFVHRCLVRRRRSQRLRSFVSDDRKVEIRIVLDDQRRIVE-----KL 60
           MA  LK+ L KLTA V  CLV RRRSQRL SF SDDRKV IRIVL+DQ RI E     KL
Sbjct: 8   MASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDSDDRKVGIRIVLEDQSRIAENSFARKL 67

Query: 61  ERAANSSYGRCEQDVDKRAEIFIDTVHRQLRLERQTSLQLRYYRVNSSETEYVERSPP 114
           ERA++S YG  E+DVD+RAEIFI+   RQLRLERQ SLQLRYYRVNS ETEY + SPP
Sbjct: 68  ERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQISPP 125

BLAST of HG10002950 vs. ExPASy TrEMBL
Match: A0A0A0L4Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 4.4e-25
Identity = 75/118 (63.56%), Postives = 89/118 (75.42%), Query Frame = 0

Query: 1   MAFCLKRTLTKLTAFVHRCLVRRRRSQRLRSFVS-DDRKVEIRIVLDDQRRIVE-----K 60
           MA  L++ L KL A +  CL+ R+RS+RL SF S DD+KV IRIVL+DQ RI E     K
Sbjct: 8   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 67

Query: 61  LERAANSSYGRCEQDVDKRAEIFIDTVHRQLRLERQTSLQLRYYRVNSSETEYVERSP 113
           LERA++S YG  E+DVD+RAEIFI+   RQLRLERQ SLQLRYYRVNS ETEY +RSP
Sbjct: 68  LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 125

BLAST of HG10002950 vs. ExPASy TrEMBL
Match: A0A6J1CW64 (uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014780 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.3e-20
Identity = 65/120 (54.17%), Postives = 80/120 (66.67%), Query Frame = 0

Query: 5   LKRTLTKLTAFVH----RCLVRRRRSQRLRSFVSDDRKVEIRIVLDD----QRRIVEKLE 64
           LK+ + K+TA +      CL RRR S RLRSF   DR V +R  L+D    +   + +LE
Sbjct: 12  LKKAVRKITALLRLNLSLCLARRRPSGRLRSFSFSDRTVGLRSFLEDEEIGENCSMRRLE 71

Query: 65  RAANSSYGRCEQDVDKRAEIFIDTVHRQLRLERQTSLQLRYYRVNSSETEYVERSPPKPP 117
           RA++  YG  E DVDKR++IFID   R+LRLERQ SLQLRYYR+NSS TE  ERSPP PP
Sbjct: 72  RASSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSSGTEDEERSPPPPP 131

BLAST of HG10002950 vs. ExPASy TrEMBL
Match: A0A0A0L6A3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 64/127 (50.39%), Postives = 75/127 (59.06%), Query Frame = 0

Query: 1   MAFCLKRTLTKLTAFVHRCLVRRRRS-QRLRSFVSDDRKVEIRIVLDDQRRIVEKLERAA 60
           MA  L+ TL KL AF+  CL+ RRRS  R R+ + DD             +    LER +
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRSIYRTRNVLEDD-------------QTARNLERDS 60

Query: 61  NSSYGRCEQ---DVDKRAEIFIDTVHRQLRLERQTSLQLRYYRV--NSSETEYVERSPPK 120
           +S Y  CE+   DVD RAEIFI+   RQLRLERQ SLQLR Y V  NS ET+Y E  PP 
Sbjct: 61  SSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEILPPP 113

Query: 121 PPPLPPI 122
           PPP PPI
Sbjct: 121 PPP-PPI 113

BLAST of HG10002950 vs. ExPASy TrEMBL
Match: A0A6J1CVX6 (ELL-associated factor 1-like OS=Momordica charantia OX=3673 GN=LOC111014779 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.2e-07
Identity = 54/132 (40.91%), Postives = 62/132 (46.97%), Query Frame = 0

Query: 3   FCLKRTLTKLTAFVHRCLVRRRRSQRLRSFVSDDRKVEIRIVLDDQ-------------- 62
           F LK+ L K T  +   L RR  S RLRS    DR V  R V   Q              
Sbjct: 10  FRLKKVLRKFTVLLRLHLARRLPSHRLRSSAFGDRTVRPRPVPPPQPLPPPPPPPPPPPS 69

Query: 63  ----RRIVEKLERAANSSYGRCEQDVDKRAEIFIDTVHRQLRLERQTSLQLR-YYRVNSS 116
                  V+        SY   E DVD+RA+ FID    +L LERQ S QLR YYR +SS
Sbjct: 70  YGIIEYDVDDSRPPMTQSYEIVEDDVDERAQKFIDDFRSRLWLERQISRQLRYYYRSSSS 129

BLAST of HG10002950 vs. TAIR 10
Match: AT5G57510.1 (unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.9 bits (102), Expect = 1.1e-04
Identity = 21/46 (45.65%), Postives = 33/46 (71.74%), Query Frame = 0

Query: 67  EQDVDKRAEIFIDTVHRQLRLERQTSLQLRYYRVNSSETEYVERSP 113
           ++D+D +AE+FI   +RQL++ERQ SL+L+Y + N+    Y  RSP
Sbjct: 87  DEDIDNKAEMFIANFYRQLKIERQISLELKYCQGNNQSFNY--RSP 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0052985.13.6e-2969.49hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK1144... [more]
XP_011652707.19.2e-2563.56uncharacterized protein LOC105435054 [Cucumis sativus][more]
KAG6596691.12.0e-2459.66hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7015798.11.4e-2055.75hypothetical protein SDJN02_23436, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6577759.16.8e-2054.87hypothetical protein SDJN03_25333, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CHZ51.7e-2969.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0L4Z84.4e-2563.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1[more]
A0A6J1CW643.3e-2054.17uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A0A0L6A31.6e-1450.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1[more]
A0A6J1CVX63.2e-0740.91ELL-associated factor 1-like OS=Momordica charantia OX=3673 GN=LOC111014779 PE=4... [more]
Match NameE-valueIdentityDescription
AT5G57510.11.1e-0445.65unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008480Protein of unknown function DUF761, plantPFAMPF05553DUF761coord: 68..97
e-value: 5.8E-8
score: 32.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 110..127
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..127
NoneNo IPR availablePANTHERPTHR33098:SF64OS08G0448100 PROTEINcoord: 17..106
NoneNo IPR availablePANTHERPTHR33098COTTON FIBER (DUF761)coord: 17..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10002950.1HG10002950.1mRNA