HG10002080 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview


Name	HG10002080
Type	gene
Organism	Lagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages;
Location	Chr11: 3160172 .. 3160459 (+)
RNA-Seq Expression	HG10002080
Synteny	HG10002080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCATCAATAAGTCTCTTCGGATTCGTCTTTACGGCCTCGCTTTCACCGTCATGATTTCCTTGCCCTTGCAGATTATATTCCTCGGCCTCTCCGCGCTCTGGAGGCCGGACCAGCCCGCTTATTCCGTCGTTTCGCTGGTTGTCTTTTTTAGTACGTTTCTATGCGCCGCTGCTGGGGAAGGCATTTTGGTCATTGTTCCCATCGCTGATTCCTTGGCCGCCGGTGGAGACTCTCGGTGGGAAGATTCTGGTCAGCTTTTGAAGACCGCCGCGGCCGACGGTTGA

mRNA sequence

ATGGTCATCAATAAGTCTCTTCGGATTCGTCTTTACGGCCTCGCTTTCACCGTCATGATTTCCTTGCCCTTGCAGATTATATTCCTCGGCCTCTCCGCGCTCTGGAGGCCGGACCAGCCCGCTTATTCCGTCGTTTCGCTGGTTGTCTTTTTTAGTACGTTTCTATGCGCCGCTGCTGGGGAAGGCATTTTGGTCATTGTTCCCATCGCTGATTCCTTGGCCGCCGGTGGAGACTCTCGGTGGGAAGATTCTGGTCAGCTTTTGAAGACCGCCGCGGCCGACGGTTGA

Coding sequence (CDS)

ATGGTCATCAATAAGTCTCTTCGGATTCGTCTTTACGGCCTCGCTTTCACCGTCATGATTTCCTTGCCCTTGCAGATTATATTCCTCGGCCTCTCCGCGCTCTGGAGGCCGGACCAGCCCGCTTATTCCGTCGTTTCGCTGGTTGTCTTTTTTAGTACGTTTCTATGCGCCGCTGCTGGGGAAGGCATTTTGGTCATTGTTCCCATCGCTGATTCCTTGGCCGCCGGTGGAGACTCTCGGTGGGAAGATTCTGGTCAGCTTTTGAAGACCGCCGCGGCCGACGGTTGA

Protein sequence

MVINKSLRIRLYGLAFTVMISLPLQIIFLGLSALWRPDQPAYSVVSLVVFFSTFLCAAAGEGILVIVPIADSLAAGGDSRWEDSGQLLKTAAADG

Homology

[Close]

BLAST of HG10002080 vs. NCBI nr
Match: XP_023007612.1 (uncharacterized protein LOC111500190 [Cucurbita maxima])

HSP 1 Score: 152.1 bits (383), Expect = 2.3e-33
Identity = 78/91 (85.71%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1   MVINKSLRIRLYGLAFTVMISLPLQIIFLGLSALWRPDQPAYSVVSLVVFFSTFLCAAAG 60
           MVINKSLR+R+Y LA T++ISLPLQIIFLGLSALW PDQPAYSVV+LVVFF+TFLCAAAG
Sbjct: 73  MVINKSLRVRVYSLASTILISLPLQIIFLGLSALWTPDQPAYSVVALVVFFTTFLCAAAG 132

Query: 61  EGILVIVPIADSLAAGGDSRWEDSGQLLKTA 92
           EGILVIVPIADSLAAGGDS WEDSG+ LK A
Sbjct: 133 EGILVIVPIADSLAAGGDSGWEDSGERLKNA 163

[Close]

BLAST of HG10002080 vs. NCBI nr
Match: KAG7015832.1 (hypothetical protein SDJN02_23470, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.4 bits (376), Expect = 1.5e-32
Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1   MVINKSLRIRLYGLAFTVMISLPLQIIFLGLSALWRPDQPAYSVVSLVVFFSTFLCAAAG 60
           MVINKSLR+R+Y LA T++ISLPLQIIFLGLSALW PDQPAYSVV+LVVFF+TFLCAAAG
Sbjct: 73  MVINKSLRVRVYSLASTILISLPLQIIFLGLSALWTPDQPAYSVVALVVFFTTFLCAAAG 132

Query: 61  EGILVIVPIADSLAAGGDSRWEDSGQLLKTA 92
           EGILVIVPIADSLAAG DS WEDSG+ LK A
Sbjct: 133 EGILVIVPIADSLAAGADSVWEDSGERLKNA 163

[Close]

BLAST of HG10002080 vs. NCBI nr
Match: KAG6577794.1 (putative protein phosphatase 2C 60, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.4 bits (376), Expect = 1.5e-32
Identity = 77/91 (84.62%), Postives = 84/91 (92.31%), Query Frame = 0


Query: 1   MVINKSLRIRLYGLAFTVMISLPLQIIFLGLSALWRPDQPAYSVVSLVVFFSTFLCAAAG 60
           MVINKSLR+R+Y LA T++ISLPLQIIFLGLSALW PDQPAYSVV+LVVFF+TFLCAAAG
Sbjct: 73  MVINKSLRVRVYSLASTILISLPLQIIFLGLSALWTPDQPAYSVVALVVFFTTFLCAAAG 132

Query: 61  EGILVIVPIADSLAAGGDSRWEDSGQLLKTA 92
           EGILVIVPIADSLAAG DS WEDSG+ LK A
Sbjct: 133 EGILVIVPIADSLAAGADSVWEDSGERLKNA 163

[Close]

BLAST of HG10002080 vs. NCBI nr
Match: KGN53609.1 (hypothetical protein Csa_014834 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 1.4e-30
Identity = 78/91 (85.71%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 1   MVINKSLRIRLYGLAFTVMISLPLQIIFLGLSALWRPDQPAYSVVSLVVFFSTFLCAAAG 60
           MVINKSLRIRLY LAFTVMISLPLQIIFLGLSALWRPDQP YS++SL+VF S FLCA AG
Sbjct: 222 MVINKSLRIRLYALAFTVMISLPLQIIFLGLSALWRPDQPTYSLLSLLVFLSAFLCATAG 281

Query: 61  EGILVIVPIADSLAAGGDSRWEDSGQLLKTA 92
           EGILVIVPIADSLAA GDS +EDSG  LKTA
Sbjct: 282 EGILVIVPIADSLAA-GDSSFEDSGHPLKTA 311

[Close]

BLAST of HG10002080 vs. NCBI nr
Match: TYK19555.1 (hypothetical protein E5676_scaffold416G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 3.0e-28
Identity = 75/91 (82.42%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1   MVINKSLRIRLYGLAFTVMISLPLQIIFLGLSALWRPDQPAYSVVSLVVFFSTFLCAAAG 60
           MVINKSLRIRL+ LAFTVMISL LQIIFLGLSALWRPD P YS++SL+VF S FLCA AG
Sbjct: 235 MVINKSLRIRLHALAFTVMISLALQIIFLGLSALWRPDHPTYSLLSLLVFLSAFLCATAG 294

Query: 61  EGILVIVPIADSLAAGGDSRWEDSGQLLKTA 92
           EGILVIVPIADSLAA GDS +EDSG  LKTA
Sbjct: 295 EGILVIVPIADSLAA-GDSCFEDSGHPLKTA 324

[Close]

BLAST of HG10002080 vs. ExPASy TrEMBL
Match: A0A6J1KZ71 (uncharacterized protein LOC111500190 OS=Cucurbita maxima OX=3661 GN=LOC111500190 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 78/91 (85.71%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1   MVINKSLRIRLYGLAFTVMISLPLQIIFLGLSALWRPDQPAYSVVSLVVFFSTFLCAAAG 60
           MVINKSLR+R+Y LA T++ISLPLQIIFLGLSALW PDQPAYSVV+LVVFF+TFLCAAAG
Sbjct: 73  MVINKSLRVRVYSLASTILISLPLQIIFLGLSALWTPDQPAYSVVALVVFFTTFLCAAAG 132

Query: 61  EGILVIVPIADSLAAGGDSRWEDSGQLLKTA 92
           EGILVIVPIADSLAAGGDS WEDSG+ LK A
Sbjct: 133 EGILVIVPIADSLAAGGDSGWEDSGERLKNA 163

[Close]

BLAST of HG10002080 vs. ExPASy TrEMBL
Match: A0A0A0KXN9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G089790 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 6.9e-31
Identity = 78/91 (85.71%), Postives = 82/91 (90.11%), Query Frame = 0


Query: 1   MVINKSLRIRLYGLAFTVMISLPLQIIFLGLSALWRPDQPAYSVVSLVVFFSTFLCAAAG 60
           MVINKSLRIRLY LAFTVMISLPLQIIFLGLSALWRPDQP YS++SL+VF S FLCA AG
Sbjct: 222 MVINKSLRIRLYALAFTVMISLPLQIIFLGLSALWRPDQPTYSLLSLLVFLSAFLCATAG 281

Query: 61  EGILVIVPIADSLAAGGDSRWEDSGQLLKTA 92
           EGILVIVPIADSLAA GDS +EDSG  LKTA
Sbjct: 282 EGILVIVPIADSLAA-GDSSFEDSGHPLKTA 311

[Close]

BLAST of HG10002080 vs. ExPASy TrEMBL
Match: A0A5D3D7N5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold416G00530 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.4e-28
Identity = 75/91 (82.42%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1   MVINKSLRIRLYGLAFTVMISLPLQIIFLGLSALWRPDQPAYSVVSLVVFFSTFLCAAAG 60
           MVINKSLRIRL+ LAFTVMISL LQIIFLGLSALWRPD P YS++SL+VF S FLCA AG
Sbjct: 235 MVINKSLRIRLHALAFTVMISLALQIIFLGLSALWRPDHPTYSLLSLLVFLSAFLCATAG 294

Query: 61  EGILVIVPIADSLAAGGDSRWEDSGQLLKTA 92
           EGILVIVPIADSLAA GDS +EDSG  LKTA
Sbjct: 295 EGILVIVPIADSLAA-GDSCFEDSGHPLKTA 324

[Close]

BLAST of HG10002080 vs. ExPASy TrEMBL
Match: A0A5A7UZP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold233G00150 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.4e-28
Identity = 75/91 (82.42%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1   MVINKSLRIRLYGLAFTVMISLPLQIIFLGLSALWRPDQPAYSVVSLVVFFSTFLCAAAG 60
           MVINKSLRIRL+ LAFTVMISL LQIIFLGLSALWRPD P YS++SL+VF S FLCA AG
Sbjct: 233 MVINKSLRIRLHALAFTVMISLALQIIFLGLSALWRPDHPTYSLLSLLVFLSAFLCATAG 292

Query: 61  EGILVIVPIADSLAAGGDSRWEDSGQLLKTA 92
           EGILVIVPIADSLAA GDS +EDSG  LKTA
Sbjct: 293 EGILVIVPIADSLAA-GDSCFEDSGHPLKTA 322

[Close]

BLAST of HG10002080 vs. ExPASy TrEMBL
Match: A0A5N6RIL4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016178 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.0e-22
Identity = 59/82 (71.95%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 1   MVINKSLRIRLYGLAFTVMISLPLQIIFLGLSALWRPDQPAYSVVSLVVFFSTFLCAAAG 60
           +VINKSLR+R+YGLAFTV+ISLP+QI+ LGLS LW P+ PAY  V+LVVF STFLCA  G
Sbjct: 35  LVINKSLRVRIYGLAFTVLISLPVQILCLGLSVLWEPEDPAYGGVALVVFISTFLCAVVG 94

Query: 61  EGILVIVPIADSLAAGGD-SRW 82
           EGILVI PI D+LAAGG+  RW
Sbjct: 95  EGILVIKPITDALAAGGECCRW 116

[Close]

BLAST of HG10002080 vs. TAIR 10
Match: AT1G57680.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 70 Blast hits to 70 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 3.4e-06
Identity = 30/77 (38.96%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 1   MVINKSLRIRLYGLAFTVMISLPLQIIFLGLSALWRPDQPAYSVVSLVVFFSTFLCAAAG 60
           +VINK L+ R+Y L F+V   LPL+I+ L LS L   D+  +  +S + F S F      
Sbjct: 227 LVINKRLQKRVYTLIFSVSSFLPLRIVMLCLSVLTAADKIIFEALSFLAFLSLFCFCVVS 286

Query: 61  EGILVIVPIADSLAAGG 78
             +LV  P++DS+A  G
Sbjct: 287 ICLLVYFPVSDSMALRG 303

[Close]

BLAST of HG10002080 vs. TAIR 10
Match: AT1G57680.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP031277 (InterPro:IPR016971); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 48.5 bits (114), Expect = 3.4e-06
Identity = 30/77 (38.96%), Postives = 44/77 (57.14%), Query Frame = 0


Query: 1   MVINKSLRIRLYGLAFTVMISLPLQIIFLGLSALWRPDQPAYSVVSLVVFFSTFLCAAAG 60
           +VINK L+ R+Y L F+V   LPL+I+ L LS L   D+  +  +S + F S F      
Sbjct: 227 LVINKRLQKRVYTLIFSVSSFLPLRIVMLCLSVLTAADKIIFEALSFLAFLSLFCFCVVS 286

Query: 61  EGILVIVPIADSLAAGG 78
             +LV  P++DS+A  G
Sbjct: 287 ICLLVYFPVSDSMALRG 303

The following BLAST results are available for this feature:

BLAST of HG10002080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023007612.1	2.3e-33	85.71	uncharacterized protein LOC111500190 [Cucurbita maxima]	[more]
KAG7015832.1	1.5e-32	84.62	hypothetical protein SDJN02_23470, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6577794.1	1.5e-32	84.62	putative protein phosphatase 2C 60, partial [Cucurbita argyrosperma subsp. soror...	[more]
KGN53609.1	1.4e-30	85.71	hypothetical protein Csa_014834 [Cucumis sativus]	[more]
TYK19555.1	3.0e-28	82.42	hypothetical protein E5676_scaffold416G00530 [Cucumis melo var. makuwa]	[more]

BLAST of HG10002080 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of HG10002080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KZ71	1.1e-33	85.71	uncharacterized protein LOC111500190 OS=Cucurbita maxima OX=3661 GN=LOC111500190...	[more]
A0A0A0KXN9	6.9e-31	85.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G089790 PE=4 SV=1	[more]
A0A5D3D7N5	1.4e-28	82.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UZP3	1.4e-28	82.42	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5N6RIL4	2.0e-22	71.95	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_016178 PE=4 SV=1	[more]

BLAST of HG10002080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G57680.1	3.4e-06	38.96	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G57680.2	3.4e-06	38.96	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34116:SF9	OS08G0346600 PROTEIN	coord: 1..82
None	No IPR available	PANTHER	PTHR34116	PLASMINOGEN ACTIVATOR INHIBITOR	coord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
HG10002080.1	HG10002080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane