HG10000109 (gene) Bottle gourd (Hangzhou Gourd) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGTCGAAAGCTGTTGTGTTTGCATGTCTATTGTTTGTCTCTGTTTTTGTTATAGCCTCGGCAGTATCGGAAGGAACTCAAGAGAAAGTTGAAGGTATGGTATTGAATTATATTGAAGCATATTCAAATTCGTCCATTTTGATTAAATATATAGAAATCAAATGTAGAATCTATGAAAAAAAAATATATCTTAGAAGAAGGTCGTCACACATGTGCCTGATTGCTTTGCACTGTTGGACGTATGTGAAAGAAAATCAATTCAAAGTACCTCAAACTTATTTTTAGTGTTAGATGATATAATATTGAATTTATCTCAAATTTAAATTTTTAGGTCAATCGGCGATTTAATATGGTATCAGAGTAGGTAGTTCTAGAGGTCATGTGTTTAAAATCCTACAATGTTATTTCCACCCCAATTAATATTGATTTTCACTTATTGAGTCTACTATATATTTCAAGCCCACATGTGAGAGGGAGTGTTAGATGATATAATATTAATTTACCTTCACCCATCAGTTTTTTGGGTCAATTAGTGATTTAACATCCCGTGATTATTAAGGACATACATATTCGTCCAATAGTCATTGCGAGACAGTCCTATTGTGGTAGACTTATTTAGTCATTTTTTTATGAGAAATTACTATAAACAGAAAAAATATCAAACTATTTACAAATATTAAAACTTTTATTACCTATCAGCGATCTATCGCGGTCAATCGCTCAAGCAATAGAATTCTATCGCGATCTATATTTGAAAAACCACCATTTTTTATATATAATTTTTTTTCTTTTAAAATAATATATTGGAAAAAATCTCTCACTTCTACAGTAAGAATGAGTAGAAAATAATTGAGAAATTAAAAGATAAAACAACAAAACTCGGAGATACAAAAAATAAATTTAACAAGAGTTAGCACAACAGATTAAACTTTCCAAAGTTATAGGATCCTCTTATAGCATTTAAAGCCCAACACTTCCTGAACTTTTCTTACGTGGGATTGCTCCAAATATTTTGTCAAAATCCAACCATATACACATCTTAATTTCTCGATGAATAATTTTGAATGAACGTGTGCAGTTGAAAAGGAAAATCCAGTAAAAGAATCAAAGCTGCGGTGCCGCTATGGATGCTACCATTATTATGGGGGTGATTGCATCAAATGCTGTGGTAGTCCTACAGAAGCAGCGCAGGCCACCAACCAAAATGGTTTCAACTCAAATTCATTTTCAACTTAA ATGAAGTCGAAAGCTGTTGTGTTTGCATGTCTATTGTTTGTCTCTGTTTTTGTTATAGCCTCGGCAGTATCGGAAGGAACTCAAGAGAAAGTTGAAGTTGAAAAGGAAAATCCAGTAAAAGAATCAAAGCTGCGGTGCCGCTATGGATGCTACCATTATTATGGGGGTGATTGCATCAAATGCTGTGGTAGTCCTACAGAAGCAGCGCAGGCCACCAACCAAAATGGTTTCAACTCAAATTCATTTTCAACTTAA ATGAAGTCGAAAGCTGTTGTGTTTGCATGTCTATTGTTTGTCTCTGTTTTTGTTATAGCCTCGGCAGTATCGGAAGGAACTCAAGAGAAAGTTGAAGTTGAAAAGGAAAATCCAGTAAAAGAATCAAAGCTGCGGTGCCGCTATGGATGCTACCATTATTATGGGGGTGATTGCATCAAATGCTGTGGTAGTCCTACAGAAGCAGCGCAGGCCACCAACCAAAATGGTTTCAACTCAAATTCATTTTCAACTTAA MKSKAVVFACLLFVSVFVIASAVSEGTQEKVEVEKENPVKESKLRCRYGCYHYYGGDCIKCCGSPTEAAQATNQNGFNSNSFST Homology
BLAST of HG10000109 vs. NCBI nr
Match: XP_022140567.1 (late embryogenesis abundant protein M17-like isoform X1 [Momordica charantia]) HSP 1 Score: 94.4 bits (233), Expect = 5.1e-16 Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 0
BLAST of HG10000109 vs. NCBI nr
Match: XP_022140624.1 (late embryogenesis abundant protein M17-like [Momordica charantia]) HSP 1 Score: 78.2 bits (191), Expect = 3.8e-11 Identity = 47/86 (54.65%), Postives = 54/86 (62.79%), Query Frame = 0
BLAST of HG10000109 vs. NCBI nr
Match: XP_022986401.1 (CYC02 protein-like [Cucurbita maxima]) HSP 1 Score: 77.0 bits (188), Expect = 8.5e-11 Identity = 46/81 (56.79%), Postives = 52/81 (64.20%), Query Frame = 0
BLAST of HG10000109 vs. NCBI nr
Match: XP_038902766.1 (CYC02 protein-like isoform X1 [Benincasa hispida]) HSP 1 Score: 77.0 bits (188), Expect = 8.5e-11 Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 0
BLAST of HG10000109 vs. NCBI nr
Match: KAG6570923.1 (hypothetical protein SDJN03_29838, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 77.0 bits (188), Expect = 8.5e-11 Identity = 46/81 (56.79%), Postives = 52/81 (64.20%), Query Frame = 0
BLAST of HG10000109 vs. ExPASy TrEMBL
Match: A0A6J1CHC2 (late embryogenesis abundant protein M17-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011193 PE=4 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 2.5e-16 Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 0
BLAST of HG10000109 vs. ExPASy TrEMBL
Match: A0A6J1CG70 (late embryogenesis abundant protein M17-like OS=Momordica charantia OX=3673 GN=LOC111011234 PE=4 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 1.8e-11 Identity = 47/86 (54.65%), Postives = 54/86 (62.79%), Query Frame = 0
BLAST of HG10000109 vs. ExPASy TrEMBL
Match: A0A6J1JB01 (CYC02 protein-like OS=Cucurbita maxima OX=3661 GN=LOC111484148 PE=4 SV=1) HSP 1 Score: 77.0 bits (188), Expect = 4.1e-11 Identity = 46/81 (56.79%), Postives = 52/81 (64.20%), Query Frame = 0
BLAST of HG10000109 vs. ExPASy TrEMBL
Match: A0A6J1CG20 (late embryogenesis abundant protein M17-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011193 PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 7.0e-11 Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 0
BLAST of HG10000109 vs. ExPASy TrEMBL
Match: A0A6J1CFE1 (late embryogenesis abundant protein M17-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111011193 PE=4 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 7.0e-11 Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
|