HG10000109 (gene) Bottle gourd (Hangzhou Gourd) v1

Overview
NameHG10000109
Typegene
OrganismLagenaria siceraria cv. Hangzhou Gourd (Bottle gourd (Hangzhou Gourd) v1)
Descriptionlate embryogenesis abundant protein M17-like isoform X1
LocationChr09: 1110000 .. 1111238 (-)
RNA-Seq ExpressionHG10000109
SyntenyHG10000109
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGTCGAAAGCTGTTGTGTTTGCATGTCTATTGTTTGTCTCTGTTTTTGTTATAGCCTCGGCAGTATCGGAAGGAACTCAAGAGAAAGTTGAAGGTATGGTATTGAATTATATTGAAGCATATTCAAATTCGTCCATTTTGATTAAATATATAGAAATCAAATGTAGAATCTATGAAAAAAAAATATATCTTAGAAGAAGGTCGTCACACATGTGCCTGATTGCTTTGCACTGTTGGACGTATGTGAAAGAAAATCAATTCAAAGTACCTCAAACTTATTTTTAGTGTTAGATGATATAATATTGAATTTATCTCAAATTTAAATTTTTAGGTCAATCGGCGATTTAATATGGTATCAGAGTAGGTAGTTCTAGAGGTCATGTGTTTAAAATCCTACAATGTTATTTCCACCCCAATTAATATTGATTTTCACTTATTGAGTCTACTATATATTTCAAGCCCACATGTGAGAGGGAGTGTTAGATGATATAATATTAATTTACCTTCACCCATCAGTTTTTTGGGTCAATTAGTGATTTAACATCCCGTGATTATTAAGGACATACATATTCGTCCAATAGTCATTGCGAGACAGTCCTATTGTGGTAGACTTATTTAGTCATTTTTTTATGAGAAATTACTATAAACAGAAAAAATATCAAACTATTTACAAATATTAAAACTTTTATTACCTATCAGCGATCTATCGCGGTCAATCGCTCAAGCAATAGAATTCTATCGCGATCTATATTTGAAAAACCACCATTTTTTATATATAATTTTTTTTCTTTTAAAATAATATATTGGAAAAAATCTCTCACTTCTACAGTAAGAATGAGTAGAAAATAATTGAGAAATTAAAAGATAAAACAACAAAACTCGGAGATACAAAAAATAAATTTAACAAGAGTTAGCACAACAGATTAAACTTTCCAAAGTTATAGGATCCTCTTATAGCATTTAAAGCCCAACACTTCCTGAACTTTTCTTACGTGGGATTGCTCCAAATATTTTGTCAAAATCCAACCATATACACATCTTAATTTCTCGATGAATAATTTTGAATGAACGTGTGCAGTTGAAAAGGAAAATCCAGTAAAAGAATCAAAGCTGCGGTGCCGCTATGGATGCTACCATTATTATGGGGGTGATTGCATCAAATGCTGTGGTAGTCCTACAGAAGCAGCGCAGGCCACCAACCAAAATGGTTTCAACTCAAATTCATTTTCAACTTAA

mRNA sequence

ATGAAGTCGAAAGCTGTTGTGTTTGCATGTCTATTGTTTGTCTCTGTTTTTGTTATAGCCTCGGCAGTATCGGAAGGAACTCAAGAGAAAGTTGAAGTTGAAAAGGAAAATCCAGTAAAAGAATCAAAGCTGCGGTGCCGCTATGGATGCTACCATTATTATGGGGGTGATTGCATCAAATGCTGTGGTAGTCCTACAGAAGCAGCGCAGGCCACCAACCAAAATGGTTTCAACTCAAATTCATTTTCAACTTAA

Coding sequence (CDS)

ATGAAGTCGAAAGCTGTTGTGTTTGCATGTCTATTGTTTGTCTCTGTTTTTGTTATAGCCTCGGCAGTATCGGAAGGAACTCAAGAGAAAGTTGAAGTTGAAAAGGAAAATCCAGTAAAAGAATCAAAGCTGCGGTGCCGCTATGGATGCTACCATTATTATGGGGGTGATTGCATCAAATGCTGTGGTAGTCCTACAGAAGCAGCGCAGGCCACCAACCAAAATGGTTTCAACTCAAATTCATTTTCAACTTAA

Protein sequence

MKSKAVVFACLLFVSVFVIASAVSEGTQEKVEVEKENPVKESKLRCRYGCYHYYGGDCIKCCGSPTEAAQATNQNGFNSNSFST
Homology
BLAST of HG10000109 vs. NCBI nr
Match: XP_022140567.1 (late embryogenesis abundant protein M17-like isoform X1 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 5.1e-16
Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 1  MKSKAVVFACLLFVSVFVIASAVSEGTQE--KVEVEKENPVKESKLRCRYGCYHYYGGDC 60
          M+SKAV F CLLF+S  VIASAVSEGTQE  +VEVE ENPV+ESK RCRYGC  + G  C
Sbjct: 1  MRSKAVAFVCLLFISTVVIASAVSEGTQEQNEVEVENENPVEESKQRCRYGCCRFDGRRC 60

Query: 61 IKCCGSPTEAAQATNQN 76
          ++CC  P E  +AT QN
Sbjct: 61 VRCCRGPAE-EEATIQN 76

BLAST of HG10000109 vs. NCBI nr
Match: XP_022140624.1 (late embryogenesis abundant protein M17-like [Momordica charantia])

HSP 1 Score: 78.2 bits (191), Expect = 3.8e-11
Identity = 47/86 (54.65%), Postives = 54/86 (62.79%), Query Frame = 0

Query: 1  MKSKAVVFACLLFVSVFVIASAVSEGTQEK---VEVEKENPVKESKLRCRYGC--YHYYG 60
          M SK ++FACLLFVS  VIAS V+EGTQE+   VEVE  N V+ESK RCR+GC  +H   
Sbjct: 1  MTSKTILFACLLFVSAIVIASVVAEGTQEQHGTVEVENGNSVEESKQRCRFGCCGFHPIS 60

Query: 61 GDCIKCC-GSPTEAAQATNQNGFNSN 81
            CI CC   P E     NQN  N N
Sbjct: 61 RRCISCCPRRPAEVQVTENQNVENEN 86

BLAST of HG10000109 vs. NCBI nr
Match: XP_022986401.1 (CYC02 protein-like [Cucurbita maxima])

HSP 1 Score: 77.0 bits (188), Expect = 8.5e-11
Identity = 46/81 (56.79%), Postives = 52/81 (64.20%), Query Frame = 0

Query: 1  MKSKAVVFACL---LFVSVFVIASAVSEGTQ---EKVEVEKENPVKESKLRCRYGCYHYY 60
          MKSKAVV ACL   L VS+ V ASAVSEG+Q   +K E    N V+ESKL C +GC   Y
Sbjct: 1  MKSKAVVVACLLLFLLVSISVSASAVSEGSQQQPDKAEGANANTVEESKLHCYHGCCKRY 60

Query: 61 GGDCIKCCGSPTEAAQATNQN 76
          G  C+KCCGS  EA   TN N
Sbjct: 61 GYRCVKCCGSAAEAQANTNAN 81

BLAST of HG10000109 vs. NCBI nr
Match: XP_038902766.1 (CYC02 protein-like isoform X1 [Benincasa hispida])

HSP 1 Score: 77.0 bits (188), Expect = 8.5e-11
Identity = 43/84 (51.19%), Postives = 57/84 (67.86%), Query Frame = 0

Query: 1  MKSKAVVFACLLFVSVFVIASAVSEGTQEKVEVEK---ENPVKESKLRCRYGCYHYYGGD 60
          MKSKAVVF CLLF+ + V+  A++EG QE+ +  K   EN V+ESKLRC +GC HYYG +
Sbjct: 1  MKSKAVVFVCLLFLILAVL--AIAEGNQEQPQNAKGSNENRVEESKLRCYHGCCHYYGYN 60

Query: 61 CIKCCGSPTEAAQATNQNGFNSNS 82
          C+KCC +  EA  A      N+N+
Sbjct: 61 CVKCCRNLAEAQAAAAAAAANNNN 82

BLAST of HG10000109 vs. NCBI nr
Match: KAG6570923.1 (hypothetical protein SDJN03_29838, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 8.5e-11
Identity = 46/81 (56.79%), Postives = 52/81 (64.20%), Query Frame = 0

Query: 1  MKSKAVVFACL---LFVSVFVIASAVSEGTQ---EKVEVEKENPVKESKLRCRYGCYHYY 60
          MKSKAVV ACL   L VS+ V ASAVSEG+Q   +K E    N V+ESKL C +GC   Y
Sbjct: 1  MKSKAVVVACLLLFLLVSISVSASAVSEGSQQQPDKAEGANANTVEESKLHCYHGCCKRY 60

Query: 61 GGDCIKCCGSPTEAAQATNQN 76
          G  C+KCCGS  EA   TN N
Sbjct: 61 GYRCVKCCGSAAEAQANTNAN 81

BLAST of HG10000109 vs. ExPASy TrEMBL
Match: A0A6J1CHC2 (late embryogenesis abundant protein M17-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011193 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.5e-16
Identity = 50/77 (64.94%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 1  MKSKAVVFACLLFVSVFVIASAVSEGTQE--KVEVEKENPVKESKLRCRYGCYHYYGGDC 60
          M+SKAV F CLLF+S  VIASAVSEGTQE  +VEVE ENPV+ESK RCRYGC  + G  C
Sbjct: 1  MRSKAVAFVCLLFISTVVIASAVSEGTQEQNEVEVENENPVEESKQRCRYGCCRFDGRRC 60

Query: 61 IKCCGSPTEAAQATNQN 76
          ++CC  P E  +AT QN
Sbjct: 61 VRCCRGPAE-EEATIQN 76

BLAST of HG10000109 vs. ExPASy TrEMBL
Match: A0A6J1CG70 (late embryogenesis abundant protein M17-like OS=Momordica charantia OX=3673 GN=LOC111011234 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.8e-11
Identity = 47/86 (54.65%), Postives = 54/86 (62.79%), Query Frame = 0

Query: 1  MKSKAVVFACLLFVSVFVIASAVSEGTQEK---VEVEKENPVKESKLRCRYGC--YHYYG 60
          M SK ++FACLLFVS  VIAS V+EGTQE+   VEVE  N V+ESK RCR+GC  +H   
Sbjct: 1  MTSKTILFACLLFVSAIVIASVVAEGTQEQHGTVEVENGNSVEESKQRCRFGCCGFHPIS 60

Query: 61 GDCIKCC-GSPTEAAQATNQNGFNSN 81
            CI CC   P E     NQN  N N
Sbjct: 61 RRCISCCPRRPAEVQVTENQNVENEN 86

BLAST of HG10000109 vs. ExPASy TrEMBL
Match: A0A6J1JB01 (CYC02 protein-like OS=Cucurbita maxima OX=3661 GN=LOC111484148 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.1e-11
Identity = 46/81 (56.79%), Postives = 52/81 (64.20%), Query Frame = 0

Query: 1  MKSKAVVFACL---LFVSVFVIASAVSEGTQ---EKVEVEKENPVKESKLRCRYGCYHYY 60
          MKSKAVV ACL   L VS+ V ASAVSEG+Q   +K E    N V+ESKL C +GC   Y
Sbjct: 1  MKSKAVVVACLLLFLLVSISVSASAVSEGSQQQPDKAEGANANTVEESKLHCYHGCCKRY 60

Query: 61 GGDCIKCCGSPTEAAQATNQN 76
          G  C+KCCGS  EA   TN N
Sbjct: 61 GYRCVKCCGSAAEAQANTNAN 81

BLAST of HG10000109 vs. ExPASy TrEMBL
Match: A0A6J1CG20 (late embryogenesis abundant protein M17-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011193 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.0e-11
Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 0

Query: 1  MKSKAVVFACLLFVSVFVIASAVSEGTQE--KVEVEKENPVKESKLRCRYGC--YHYYGG 60
          M+SKAV F CLLF+S  VIASAVSEGTQE  +VEVE  N +++SK RCR+GC   + +  
Sbjct: 1  MRSKAVAFVCLLFISTVVIASAVSEGTQEQNEVEVESGNSIEDSKQRCRHGCCVVNRHTL 60

Query: 61 DCIKCCGSPTEA-AQAT--NQNGFNSN 81
           C++CC  P     QAT  NQN  N N
Sbjct: 61 RCVRCCSRPRSVEVQATLQNQNVENEN 87

BLAST of HG10000109 vs. ExPASy TrEMBL
Match: A0A6J1CFE1 (late embryogenesis abundant protein M17-like isoform X3 OS=Momordica charantia OX=3673 GN=LOC111011193 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.0e-11
Identity = 47/87 (54.02%), Postives = 58/87 (66.67%), Query Frame = 0

Query: 1  MKSKAVVFACLLFVSVFVIASAVSEGTQE--KVEVEKENPVKESKLRCRYGC--YHYYGG 60
          M+SKAV F CLLF+S  VIASAVSEGTQE  +VEVE  N +++SK RCR+GC   + +  
Sbjct: 1  MRSKAVAFVCLLFISTVVIASAVSEGTQEQNEVEVESGNSIEDSKQRCRHGCCVVNRHTL 60

Query: 61 DCIKCCGSPTEA-AQAT--NQNGFNSN 81
           C++CC  P     QAT  NQN  N N
Sbjct: 61 RCVRCCSRPRSVEVQATLQNQNVENEN 87

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022140567.15.1e-1664.94late embryogenesis abundant protein M17-like isoform X1 [Momordica charantia][more]
XP_022140624.13.8e-1154.65late embryogenesis abundant protein M17-like [Momordica charantia][more]
XP_022986401.18.5e-1156.79CYC02 protein-like [Cucurbita maxima][more]
XP_038902766.18.5e-1151.19CYC02 protein-like isoform X1 [Benincasa hispida][more]
KAG6570923.18.5e-1156.79hypothetical protein SDJN03_29838, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CHC22.5e-1664.94late embryogenesis abundant protein M17-like isoform X1 OS=Momordica charantia O... [more]
A0A6J1CG701.8e-1154.65late embryogenesis abundant protein M17-like OS=Momordica charantia OX=3673 GN=L... [more]
A0A6J1JB014.1e-1156.79CYC02 protein-like OS=Cucurbita maxima OX=3661 GN=LOC111484148 PE=4 SV=1[more]
A0A6J1CG207.0e-1154.02late embryogenesis abundant protein M17-like isoform X2 OS=Momordica charantia O... [more]
A0A6J1CFE17.0e-1154.02late embryogenesis abundant protein M17-like isoform X3 OS=Momordica charantia O... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bottle gourd (Hangzhou Gourd) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePIRSRPIRSR000025-1PIRSR000025-1coord: 1..73
e-value: 0.0026
score: 15.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
HG10000109.1HG10000109.1mRNA