Cucsat.G3814 (gene) Cucumber (B10) v3

Overview
NameCucsat.G3814
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description40S ribosomal protein S3a
Locationctg105: 2454482 .. 2457669 (+)
RNA-Seq ExpressionCucsat.G3814
SyntenyCucsat.G3814
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TAGAAAAAAAAAAAGGAAAAAAGAAAAAGAAAAAAGCGAGGACCTATTTAAAGAGAGCTTATTAGGGTTTTCGGGGACAGCCGTTTCTCTCTCGCTTGTTTTTCATCCTCTGGAGCTGCTCCAAGCTTCTCAACTACTTCACAACCATGGCTGTCGGGTACCCTTCCTCTCTCCCTTTCTTCTCCCCATTACTTTCCCTTTACTCTCTTCACTGATGCAACTCTTTTTTCTTCTCCTTGCAGCAAAAACAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAGACGTACGTATCTTCTTCCATTCCATTGAAATTTCTTATATCAGATCTGGGTGTCGTCTTATATTCGGTTCTTGTTTATTTCAATTCTTCTCTTTTAGTTAATAATAATGCTCTATTGATGGATTTATTAATTTGGTTTTGTTTCTGTATGGGTTCTTTAGTGTCGACCCATTTGCAAAGAAGGATTGGTATGATATCAAGGCACCCTCTGTGTTCACTGTCAAGAACGTTGGAAAGACTCTTGTTACCCGTACCCAGGGAACCAAGGTAGATTCTTCATTGTTATTGCTCCCTTCAGCTGTAGTTTCTTTACTTTTATTTGCTTATGCCATTGTCTTTCTATATACTTTTGCTGTATTTTGCTATCTTCGTGTGGAAGATGCTCTCTTGTTTGTAGAATGGTCACTATGTTTTACGAAGATATCTTAGTGTATATCTGGGAGTGATTTTATCATATTGAAAATTACCTCGATATACAATTTTACCCTTCTAAACGCAATTTTCTCGTCATTAAAATTTATTTTAAATGATTAAAGAGGTGATTTATAGTGGTTTTGAAAACCACAAAATTGATTGTAACAATTTCAAGATACTCTCAAACATGCCCTTAATGGGGTGTTTGCCTAATATTTTCACCGCTCAGCATGTTCTTGAGTGACTACCTTAATAGCAAAAATGACATTGTTTATTTAGCTGTAATGTGGTTTCGAGACATCTATTTGGTTGTATTAATTTTAATCGTTCCATATAGATATGATGCGGTGTTAGTAAAGTCACTCATTTTGTAGATTAGAAGTGGCATTTTATTATTCTATACACACACAGCCTTTGAAATCCTTTGTAGGATTATATTTATTTATTTTTTATAGGATTCTAGGATTACACTTAATAGTAGGTCAGGTTAATTTTTACCTTTAGCAATGCATGAAACATTCTGAAATGTATGGTTATACTTGTAGATTGATATGGCAATTATTTTTCTTTGTGGTTTGGTACTGTTATTTCTCGTCTGTCTTTTATCAGTAACTAATAATAATTGTTATATCAACAGATTGCTTCTGAAGGGCTTAAACATAGAGTGTTTGAGGTATCACTCGCTGATCTTCAAGAAGATGAAGAGCACGCCTACAGAAAGATTAGATTGAGAGCTGAAGATGTTCAAGGAAGAAACGTTCTGACTAATTTCTGGGTATGGAATGGATGAGTTGCCTTTCATATATATTTGGATGGATGTCACACGCTTCAAATAGAAAAGTTTATTAGAATGACATTGACTGCCTTTATCATTTTGAGAATGGTCCATAAAAAGATTTTTTATGGCTCACAAGCGTTCTGCCTTCCATTGTTCTACAGGGAATGAATTTCACTACAGACAAATTAAGGTCATTGGTAAGGAAGTGGCATACGTTGATTGAAGCCCATGTGGATGTTAAGACCACAGACAATTACACTCTGAGGATGTTTTGCATTGGGTTTACAAAGAGACGTCCAAATCAAGTCAAAAGGACCTGCTATGCGCAATCCAGTCAGATCAGACAGGTGACTGCTCTTTTTTTTTTGTTGTCTTCCTGAAAAGATTTTACTGATGATCTGAATCTCTATATTGGATTTACTATGAAGGATATTATTGAATATAAAAGTTATGGATGAATTGAAAGCCTTGTAGACAACTATTTATCTTAACAATGGTCGCATGCATGGGAGAATACTGGAACAATGTTTTTGTTAGTGCAATGACAATAGACACCTTGCACATTCTGCTTCATTTTAACATTCTGCTTCATTTTAACCTTTCTTAAAATCGAAGTTTAGGATTAATGTGTATTTTCTTGACTCTTAAATATTGTTCACCCCGTACTATTGGTTACTTCAATTTTAATTATCTGAAATGTTATTTTATACTATTAACTTATATTGGACAATTGGTTATGCCAATCAAATACTATGCCCTTTGTCTGAGTTAGTGTTTTATTTCCTCTAGAAAAATGTTTGTGCATCGTGTCTGATTTTGAAGGACATGGGGATGAGATTGAGATTTGCAACTTTTTATATTCCTGGCAATCTGTTACTGTTTGTAAACATTTGTTTGTAATTACAGATTCGTAGGAAGATGAGGGAGATAATGGTCAACCAAGCAACATCATGCGATTTGAAAGAGTTGGTTCGTAAGTTCATACCTGAATCAATTGGAAAGGATATCGAGAAGGCTACATCTAGCATATACCCTCTACAGAATGTTTTCATCCGGAAGGTCAAGATCTTGAAAGCTCCCAAGTTTGATCTTGGAAAGTTGATGGAGGTATACAACTATTTACGTGTGCTTGTTAACTATCTATTTCGACCATAATTTGAAGATTCATTATCAAATCTGCTTGTCATCTTTTTTCTTGTTCTGAATATAGTTCTTAGGTAGGTGTCAATCGAGGCTGTTTAATTGGTTGCAATGATATTTATCAACCTTTTTGGTTGTCTATCTATAGGTTCATGGTGATTATTCGGAAGATGTTGGCGTCAAGGTAGACAGGCCTGCGGAAGAAGCCGTTGAAGGTGCTACTGAAGTTGTCGGTGCTTGAAAATGGAATCATGAATCAACTTTCTTATATTTACGAATGAACTGTGGCTTTTAATTTTTTAAAATTTTCTATTTTTAGTTAGTCTTGTTATGTTTCTGCCAAGTTGAGAAATCAGAGATATTCAGCGATTTTGACTATGAAAATACTTGCCGCTTTTTAGTTATGCATTGTTCCTTGGGACCATTTGAATACACATATTAAGCGCTCTCGTCTTGTTTTATCAACTTGAAAACTTGTTATTAAGTCATTTTGAAATGTGTCTTTACTGCAACTACGAAGGTTGTGTAAGAAATATTTGAATCATGTATAAAATTGATTTTGGCTCAAGAGTGCATAATTGGTTTTGCTGAATAAATATCAGGCTTGGTTTCATATGTATGTGTGTACGCCCGCACACATACCACGTGGTTCAATTGGGAAATTTGGATGGATAGGTTTGTAGACCCAAATGAGATTTGATTTAAGGATGGTAAAGATCGGCTTT

Coding sequence (CDS)

ATGGCTGTCGGCAAAAACAAGAGGATTTCCAAGGGAAAGAAGGGTGGCAAGAAGAAGACTGTCGACCCATTTGCAAAGAAGGATTGGTATGATATCAAGGCACCCTCTGTGTTCACTGTCAAGAACGTTGGAAAGACTCTTGTTACCCGTACCCAGGGAACCAAGATTGCTTCTGAAGGGCTTAAACATAGAGTGTTTGAGGTATCACTCGCTGATCTTCAAGAAGATGAAGAGCACGCCTACAGAAAGATTAGATTGAGAGCTGAAGATGTTCAAGGAAGAAACGTTCTGACTAATTTCTGGGGAATGAATTTCACTACAGACAAATTAAGGTCATTGGTAAGGAAGTGGCATACGTTGATTGAAGCCCATGTGGATGTTAAGACCACAGACAATTACACTCTGAGGATGTTTTGCATTGGGTTTACAAAGAGACGTCCAAATCAAGTCAAAAGGACCTGCTATGCGCAATCCAGTCAGATCAGACAGATTCGTAGGAAGATGAGGGAGATAATGGTCAACCAAGCAACATCATGCGATTTGAAAGAGTTGGTTCGTAAGTTCATACCTGAATCAATTGGAAAGGATATCGAGAAGGCTACATCTAGCATATACCCTCTACAGAATGTTTTCATCCGGAAGGTCAAGATCTTGAAAGCTCCCAAGTTTGATCTTGGAAAGTTGATGGAGGTTCATGGTGATTATTCGGAAGATGTTGGCGTCAAGGTAGACAGGCCTGCGGAAGAAGCCGTTGAAGGTGCTACTGAAGTTGTCGGTGCTTGA

Protein sequence

MAVGKNKRISKGKKGGKKKTVDPFAKKDWYDIKAPSVFTVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQEDEEHAYRKIRLRAEDVQGRNVLTNFWGMNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATEVVGA
Homology
[Close]
BLAST of Cucsat.G3814 vs. ExPASy Swiss-Prot
Match: Q8GTE3 (40S ribosomal protein S3a OS=Cicer arietinum OX=3827 PE=2 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 2.5e-75
Identity = 144/159 (90.57%), Postives = 150/159 (94.34%), Query Frame = 0 

Query: 1   MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 60
           M+FTTDKLRSLVRKW TLIEAHVDVKTTDNYTLRMFCIGFTKRR NQVKRTCYAQSSQIR
Sbjct: 103 MDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIR 162

Query: 61  QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 120
           QIRRKMREIMVNQATSCDLKELVRKFIPE IGK+IEKATSSIYPLQNVFIRKVKILK+PK
Sbjct: 163 QIRRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKSPK 222

Query: 121 FDLGKLMEVHGDYSEDVGVKVDRPAEE-AVEGATEVVGA 159
           FDLGKLMEVHGDYSEDVG KV+ PA+E  VEG  E+VGA
Sbjct: 223 FDLGKLMEVHGDYSEDVGTKVESPADETVVEGTPEIVGA 261

[Close]
BLAST of Cucsat.G3814 vs. ExPASy Swiss-Prot
Match: P49198 (40S ribosomal protein S3a OS=Helianthus annuus OX=4232 GN=RPS3A PE=2 SV=2)

HSP 1 Score: 275.8 bits (704), Expect = 3.1e-73
Identity = 137/158 (86.71%), Postives = 150/158 (94.94%), Query Frame = 0 

Query: 1   MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 60
           M+ TTDKLRSLV+KW +LIEAHVDVKTTDN+TLRMFCIGFTK+R NQVKRTCYAQSSQI+
Sbjct: 103 MDVTTDKLRSLVKKWQSLIEAHVDVKTTDNFTLRMFCIGFTKKRANQVKRTCYAQSSQIK 162

Query: 61  QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 120
           QIRRKMREIMV QA +CDLKELV+KFIPESIG++IEKATSSIYPLQNVFIRKVKILKAPK
Sbjct: 163 QIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPK 222

Query: 121 FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATEVVGA 159
           FD+GKLMEVHGDYSEDVGVK+DRPAEEA   ATEV+GA
Sbjct: 223 FDIGKLMEVHGDYSEDVGVKLDRPAEEAAPEATEVIGA 260

[Close]
BLAST of Cucsat.G3814 vs. ExPASy Swiss-Prot
Match: A5B4K1 (40S ribosomal protein S3a-1 OS=Vitis vinifera OX=29760 GN=GSVIVT00020038001 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.0e-72
Identity = 137/159 (86.16%), Postives = 149/159 (93.71%), Query Frame = 0 

Query: 1   MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 60
           M+FTTDKLRSLVRKW TLIEAHVDVKTTDNYTLR+FCI FTK+R NQ K+TCYAQSSQIR
Sbjct: 103 MDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFCIAFTKKRVNQNKKTCYAQSSQIR 162

Query: 61  QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 120
           QIRRKMREIM N ATSCDLKELV+KFIPESIG++IEKATSSIYPLQNV+IRKVKILKAPK
Sbjct: 163 QIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPK 222

Query: 121 FDLGKLMEVHGDYSEDVGVKVDRPAEEAV-EGATEVVGA 159
           FDLGKLMEVHGDYSEDVG K++RPA+E V EG TEV+GA
Sbjct: 223 FDLGKLMEVHGDYSEDVGTKLERPADEPVAEGVTEVIGA 261

[Close]
BLAST of Cucsat.G3814 vs. ExPASy Swiss-Prot
Match: P33444 (40S ribosomal protein S3a OS=Catharanthus roseus OX=4058 GN=RPS3A PE=2 SV=4)

HSP 1 Score: 273.1 bits (697), Expect = 2.0e-72
Identity = 138/159 (86.79%), Postives = 150/159 (94.34%), Query Frame = 0 

Query: 1   MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 60
           M+FTTDKLRSLVRKW +LIEAHVDVKTTD+YTLRMFCIGFTK+R NQ KRTCYAQSSQIR
Sbjct: 103 MDFTTDKLRSLVRKWQSLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIR 162

Query: 61  QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 120
           QIRRKMREIMVNQA SCDLK+LV+KFIPESIG++IEKATSSIYPLQNVFIRKVKILKAPK
Sbjct: 163 QIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPK 222

Query: 121 FDLGKLMEVHGDYSE-DVGVKVDRPAEEAVEGATEVVGA 159
           FDLGKLMEVHGDY+E D+G K+DRPAEEAV   TEV+GA
Sbjct: 223 FDLGKLMEVHGDYNEDDIGTKLDRPAEEAVAEPTEVIGA 261

[Close]
BLAST of Cucsat.G3814 vs. ExPASy Swiss-Prot
Match: Q9MBB3 (40S ribosomal protein S3a OS=Daucus carota OX=4039 GN=cyc07 PE=2 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 5.8e-72
Identity = 139/159 (87.42%), Postives = 149/159 (93.71%), Query Frame = 0 

Query: 1   MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 60
           M+FTTDKLRSLVRKW TLIEAHVDVKTTD+YTLRMFCIGFTK+R NQ KRTCYAQSSQIR
Sbjct: 103 MDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIR 162

Query: 61  QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 120
           QIRRKM EIM NQA+SCDLKELV KFIPESIG++IEKATSSI+PLQNVFIRKVKILKAPK
Sbjct: 163 QIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVFIRKVKILKAPK 222

Query: 121 FDLGKLMEVHGDYSEDVGVKVDRPAEEA-VEGATEVVGA 159
           FD+GKLMEVHGDYSEDVGVK++RP EE  VEG TEVVGA
Sbjct: 223 FDIGKLMEVHGDYSEDVGVKLERPIEETMVEGETEVVGA 261

[Close]
BLAST of Cucsat.G3814 vs. NCBI nr
Match: XP_004153483.1 (40S ribosomal protein S3a [Cucumis sativus] >KGN61672.1 hypothetical protein Csa_006437 [Cucumis sativus])

HSP 1 Score: 311 bits (796), Expect = 4.30e-105
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0 

Query: 1   MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 60
           MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR
Sbjct: 103 MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 162

Query: 61  QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 120
           QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK
Sbjct: 163 QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 222

Query: 121 FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATEVVGA 158
           FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATEVVGA
Sbjct: 223 FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATEVVGA 260

[Close]
BLAST of Cucsat.G3814 vs. NCBI nr
Match: XP_008449325.1 (PREDICTED: 40S ribosomal protein S3a-like [Cucumis melo] >KAA0057440.1 40S ribosomal protein S3a-like [Cucumis melo var. makuwa] >TYK30139.1 40S ribosomal protein S3a-like [Cucumis melo var. makuwa])

HSP 1 Score: 310 bits (795), Expect = 6.11e-105
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 0 

Query: 1   MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 60
           MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR
Sbjct: 103 MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 162

Query: 61  QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 120
           QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK
Sbjct: 163 QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 222

Query: 121 FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATEVVGA 158
           FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATE+VGA
Sbjct: 223 FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATEIVGA 260

[Close]
BLAST of Cucsat.G3814 vs. NCBI nr
Match: XP_022138569.1 (40S ribosomal protein S3a [Momordica charantia])

HSP 1 Score: 306 bits (785), Expect = 2.03e-103
Identity = 155/158 (98.10%), Postives = 157/158 (99.37%), Query Frame = 0 

Query: 1   MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 60
           MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR
Sbjct: 103 MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 162

Query: 61  QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 120
           QIRRKMREIMVNQATSCDLKELVRKFIPESIGK+IEKATSSIYPLQNVFIRKVKILKAPK
Sbjct: 163 QIRRKMREIMVNQATSCDLKELVRKFIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPK 222

Query: 121 FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATEVVGA 158
           FDLGKLMEVHGDYSEDVGVKVDRPA+E VEGATEVVGA
Sbjct: 223 FDLGKLMEVHGDYSEDVGVKVDRPADEVVEGATEVVGA 260

[Close]
BLAST of Cucsat.G3814 vs. NCBI nr
Match: XP_023006746.1 (40S ribosomal protein S3a-like [Cucurbita maxima] >XP_023548740.1 40S ribosomal protein S3a-like [Cucurbita pepo subsp. pepo] >KAG6574967.1 hypothetical protein SDJN03_25606, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013536.1 hypothetical protein SDJN02_23702 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 306 bits (783), Expect = 4.10e-103
Identity = 155/158 (98.10%), Postives = 157/158 (99.37%), Query Frame = 0 

Query: 1   MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 60
           MNFTTDKLRSLVRKWHTLIEAHVDVKTTD+YTLRMFCIGFTKRRPNQVKRTCYAQSSQIR
Sbjct: 103 MNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 162

Query: 61  QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 120
           QIRRKMREIMVNQATSCDLKELVRKFIPESIGK+IEKATSSIYPLQNVFIRKVKILKAPK
Sbjct: 163 QIRRKMREIMVNQATSCDLKELVRKFIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPK 222

Query: 121 FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATEVVGA 158
           FDLGKLMEVHGDYSEDVGVKVDRPAEE VEGATEVVGA
Sbjct: 223 FDLGKLMEVHGDYSEDVGVKVDRPAEEVVEGATEVVGA 260

[Close]
BLAST of Cucsat.G3814 vs. NCBI nr
Match: XP_022959011.1 (40S ribosomal protein S3a-like [Cucurbita moschata])

HSP 1 Score: 303 bits (777), Expect = 3.36e-102
Identity = 154/158 (97.47%), Postives = 156/158 (98.73%), Query Frame = 0 

Query: 1   MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 60
           MNFTTDKLRSLVRKWHTLIEAHVDVKTTD+YTLRMFCIGFTKRRPNQVKRTCYAQSSQIR
Sbjct: 103 MNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 162

Query: 61  QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 120
           QIRRKMREIMVNQATSCDLKELVRKFIPE IGK+IEKATSSIYPLQNVFIRKVKILKAPK
Sbjct: 163 QIRRKMREIMVNQATSCDLKELVRKFIPELIGKEIEKATSSIYPLQNVFIRKVKILKAPK 222

Query: 121 FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATEVVGA 158
           FDLGKLMEVHGDYSEDVGVKVDRPAEE VEGATEVVGA
Sbjct: 223 FDLGKLMEVHGDYSEDVGVKVDRPAEEVVEGATEVVGA 260

[Close]
BLAST of Cucsat.G3814 vs. ExPASy TrEMBL
Match: A0A0A0LLN9 (40S ribosomal protein S3a OS=Cucumis sativus OX=3659 GN=Csa_2G223140 PE=3 SV=1)

HSP 1 Score: 311 bits (796), Expect = 2.08e-105
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0 

Query: 1   MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 60
           MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR
Sbjct: 103 MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 162

Query: 61  QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 120
           QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK
Sbjct: 163 QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 222

Query: 121 FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATEVVGA 158
           FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATEVVGA
Sbjct: 223 FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATEVVGA 260

[Close]
BLAST of Cucsat.G3814 vs. ExPASy TrEMBL
Match: A0A5A7UQR0 (40S ribosomal protein S3a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001230 PE=3 SV=1)

HSP 1 Score: 310 bits (795), Expect = 2.96e-105
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 0 

Query: 1   MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 60
           MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR
Sbjct: 103 MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 162

Query: 61  QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 120
           QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK
Sbjct: 163 QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 222

Query: 121 FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATEVVGA 158
           FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATE+VGA
Sbjct: 223 FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATEIVGA 260

[Close]
BLAST of Cucsat.G3814 vs. ExPASy TrEMBL
Match: A0A1S3BMP7 (40S ribosomal protein S3a OS=Cucumis melo OX=3656 GN=LOC103491239 PE=3 SV=1)

HSP 1 Score: 310 bits (795), Expect = 2.96e-105
Identity = 157/158 (99.37%), Postives = 158/158 (100.00%), Query Frame = 0 

Query: 1   MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 60
           MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR
Sbjct: 103 MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 162

Query: 61  QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 120
           QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK
Sbjct: 163 QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 222

Query: 121 FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATEVVGA 158
           FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATE+VGA
Sbjct: 223 FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATEIVGA 260

[Close]
BLAST of Cucsat.G3814 vs. ExPASy TrEMBL
Match: A0A6J1CAG4 (40S ribosomal protein S3a OS=Momordica charantia OX=3673 GN=LOC111009696 PE=3 SV=1)

HSP 1 Score: 306 bits (785), Expect = 9.85e-104
Identity = 155/158 (98.10%), Postives = 157/158 (99.37%), Query Frame = 0 

Query: 1   MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 60
           MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR
Sbjct: 103 MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 162

Query: 61  QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 120
           QIRRKMREIMVNQATSCDLKELVRKFIPESIGK+IEKATSSIYPLQNVFIRKVKILKAPK
Sbjct: 163 QIRRKMREIMVNQATSCDLKELVRKFIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPK 222

Query: 121 FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATEVVGA 158
           FDLGKLMEVHGDYSEDVGVKVDRPA+E VEGATEVVGA
Sbjct: 223 FDLGKLMEVHGDYSEDVGVKVDRPADEVVEGATEVVGA 260

[Close]
BLAST of Cucsat.G3814 vs. ExPASy TrEMBL
Match: A0A6J1KYM2 (40S ribosomal protein S3a OS=Cucurbita maxima OX=3661 GN=LOC111499385 PE=3 SV=1)

HSP 1 Score: 306 bits (783), Expect = 1.98e-103
Identity = 155/158 (98.10%), Postives = 157/158 (99.37%), Query Frame = 0 

Query: 1   MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 60
           MNFTTDKLRSLVRKWHTLIEAHVDVKTTD+YTLRMFCIGFTKRRPNQVKRTCYAQSSQIR
Sbjct: 103 MNFTTDKLRSLVRKWHTLIEAHVDVKTTDSYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 162

Query: 61  QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 120
           QIRRKMREIMVNQATSCDLKELVRKFIPESIGK+IEKATSSIYPLQNVFIRKVKILKAPK
Sbjct: 163 QIRRKMREIMVNQATSCDLKELVRKFIPESIGKEIEKATSSIYPLQNVFIRKVKILKAPK 222

Query: 121 FDLGKLMEVHGDYSEDVGVKVDRPAEEAVEGATEVVGA 158
           FDLGKLMEVHGDYSEDVGVKVDRPAEE VEGATEVVGA
Sbjct: 223 FDLGKLMEVHGDYSEDVGVKVDRPAEEVVEGATEVVGA 260

[Close]
BLAST of Cucsat.G3814 vs. TAIR 10
Match: AT3G04840.1 (Ribosomal protein S3Ae )

HSP 1 Score: 263.8 bits (673), Expect = 8.6e-71
Identity = 134/160 (83.75%), Postives = 149/160 (93.12%), Query Frame = 0 

Query: 1   MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 60
           M+FTTDKLRSLV+KW TLIEAHVDVKTTD+YTLR+FCI FTKRR NQVKRTCYAQSSQIR
Sbjct: 103 MDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIR 162

Query: 61  QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 120
           QIRRKMR+IMV +A+SCDLK+LV KFIPE+IG++IEKAT  IYPLQNVFIRKVKILKAPK
Sbjct: 163 QIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPK 222

Query: 121 FDLGKLMEVHGDYS-EDVGVKVDRPAEE-AVEGATEVVGA 159
           FDLGKLM+VHGDYS EDVGVKVDRPA+E AVE  TE++GA
Sbjct: 223 FDLGKLMDVHGDYSAEDVGVKVDRPADEMAVEEPTEIIGA 262

[Close]
BLAST of Cucsat.G3814 vs. TAIR 10
Match: AT4G34670.1 (Ribosomal protein S3Ae )

HSP 1 Score: 263.1 bits (671), Expect = 1.5e-70
Identity = 135/160 (84.38%), Postives = 146/160 (91.25%), Query Frame = 0 

Query: 1   MNFTTDKLRSLVRKWHTLIEAHVDVKTTDNYTLRMFCIGFTKRRPNQVKRTCYAQSSQIR 60
           M+FTTDKLRSLV+KW TLIEAHVDVKTTD YTLRMFCI FTKRR NQVKRTCYAQSSQIR
Sbjct: 103 MDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIR 162

Query: 61  QIRRKMREIMVNQATSCDLKELVRKFIPESIGKDIEKATSSIYPLQNVFIRKVKILKAPK 120
           QIRRKM EIMV +A+SCDLKELV KFIPE+IG++IEKAT  IYPLQNVFIRKVKILKAPK
Sbjct: 163 QIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPK 222

Query: 121 FDLGKLMEVHGDY-SEDVGVKVDRPAEEA-VEGATEVVGA 159
           FDLGKLMEVHGDY +EDVGVKVDRPA+E  VE  TE++GA
Sbjct: 223 FDLGKLMEVHGDYTAEDVGVKVDRPADETMVEEPTEIIGA 262

The following BLAST results are available for this feature:
BLAST of Cucsat.G3814 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8GTE32.5e-7590.5740S ribosomal protein S3a OS=Cicer arietinum OX=3827 PE=2 SV=1[more]
P491983.1e-7386.7140S ribosomal protein S3a OS=Helianthus annuus OX=4232 GN=RPS3A PE=2 SV=2[more]
A5B4K12.0e-7286.1640S ribosomal protein S3a-1 OS=Vitis vinifera OX=29760 GN=GSVIVT00020038001 PE=3... [more]
P334442.0e-7286.7940S ribosomal protein S3a OS=Catharanthus roseus OX=4058 GN=RPS3A PE=2 SV=4[more]
Q9MBB35.8e-7287.4240S ribosomal protein S3a OS=Daucus carota OX=4039 GN=cyc07 PE=2 SV=1[more]
BLAST of Cucsat.G3814 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004153483.14.30e-105100.0040S ribosomal protein S3a [Cucumis sativus] >KGN61672.1 hypothetical protein Csa... [more]
XP_008449325.16.11e-10599.37PREDICTED: 40S ribosomal protein S3a-like [Cucumis melo] >KAA0057440.1 40S ribos... [more]
XP_022138569.12.03e-10398.1040S ribosomal protein S3a [Momordica charantia][more]
XP_023006746.14.10e-10398.1040S ribosomal protein S3a-like [Cucurbita maxima] >XP_023548740.1 40S ribosomal ... [more]
XP_022959011.13.36e-10297.4740S ribosomal protein S3a-like [Cucurbita moschata][more]
BLAST of Cucsat.G3814 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLN92.08e-105100.0040S ribosomal protein S3a OS=Cucumis sativus OX=3659 GN=Csa_2G223140 PE=3 SV=1[more]
A0A5A7UQR02.96e-10599.3740S ribosomal protein S3a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3BMP72.96e-10599.3740S ribosomal protein S3a OS=Cucumis melo OX=3656 GN=LOC103491239 PE=3 SV=1[more]
A0A6J1CAG49.85e-10498.1040S ribosomal protein S3a OS=Momordica charantia OX=3673 GN=LOC111009696 PE=3 SV... [more]
A0A6J1KYM21.98e-10398.1040S ribosomal protein S3a OS=Cucurbita maxima OX=3661 GN=LOC111499385 PE=3 SV=1[more]
BLAST of Cucsat.G3814 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G04840.18.6e-7183.75Ribosomal protein S3Ae [more]
AT4G34670.11.5e-7084.38Ribosomal protein S3Ae [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001593Ribosomal protein S3AeSMARTSM01397Ribosomal_S3Ae_2coord: 15..221
e-value: 3.8E-141
score: 484.9
IPR001593Ribosomal protein S3AePFAMPF01015Ribosomal_S3Aecoord: 16..221
e-value: 6.6E-84
score: 280.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availablePANTHERPTHR1183040S RIBOSOMAL PROTEIN S3Acoord: 1..259
NoneNo IPR availablePANTHERPTHR11830:SF3340S RIBOSOMAL PROTEIN S3Acoord: 1..259
IPR018281Ribosomal protein S3Ae, conserved sitePROSITEPS01191RIBOSOMAL_S3AEcoord: 61..73
IPR02750040S ribosomal protein S1/3, eukaryotesHAMAPMF_03122Ribosomal_S3Ae_eukcoord: 1..257
score: 40.741302

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G3814.T1Cucsat.G3814.T1mRNA
Cucsat.G3814.T5Cucsat.G3814.T5mRNA
Cucsat.G3814.T7Cucsat.G3814.T7mRNA
Cucsat.G3814.T6Cucsat.G3814.T6mRNA
Cucsat.G3814.T4Cucsat.G3814.T4mRNA
Cucsat.G3814.T2Cucsat.G3814.T2mRNA
Cucsat.G3814.T8Cucsat.G3814.T8mRNA
Cucsat.G3814.T3Cucsat.G3814.T3mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome