Cucsat.G3784 (gene) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TTACCCTCAGATTCACCAAAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCCCCTCTTTTCTCTCTCTTTCTTTCTTTGGAGCCCCAGTCGGCTACAAACCCTCTTCCGAAATCCGTAACCCAGAAATCCAAATTTCAATTTTCAGACAGGAACGAAACAAAACCCAGTCGAATCGATTTTCTCCATTGATTTGGGGTTTCTTGAGAATAGAGAAGAGGGAAAAGAAAGGGGCAATGGATTCGGATCAAGGGAAGCTTTTTATTGGTGGGATTTCATGGGAGACTTCTGAGGATAAGCTTAAGGACTACTTTAGCAACTATGGTGAAGTTATGCATACCGTCGTTATGAGGGATAAGATCACTAGCAGACCCAGAGGGTTTGGCTTTGTTGTCTTTTCAGATCCCTCTGTTCTTGATCGAGTTCTTCAGGATAAGCACACTATCGATGGTAAAACGGTGAGTTACGAATCTTGTTTCTCTGTTCTTCTTTTGATATGTGGAGTTTTTCCCTTTCTGTTTTTTTTTATATATATATTTATAATTACCATGTGGGTTTTCTTTTATTTGACGTTTTTTTTTTTTTTTTTATCATGATGACTCTAGTTGGTGGATATGGATACAACTCATTTCAGTTGTTGTGGGGGGGTTTGATTCCACAATGGCACTAAATAGTTTTCTTTTGGGTGCCAAATGTTTGGTGCTTATTGGTTTTTTAGGGTGGCTTGTATTGATGCGTGTTTAACTTTCGATTCATGTGTTTTCTTTTCTTTGCTTGTTGTTTTTGTTGATTTATCTGTTGGTTTGGTGCATATTTTCTCATGAGGCGAGACATTGACAAAAGGGTCGGTTGTATTATGTAATTTCATTTCAATATGGTTTATGATTTCACTATGACCTACTAGACCCAATCATATTTCGTATTTTGTGTCTTTTCTCTTGGTAGCCAATTGTAGAGTATAGACTTGGAATATTAGAAGTGTGTGGCTATGAATCTGTTGGTTTCAACCGTTAAGTATGTCTCAAATTTTCTTTGCTTAATGTTATTTGTTCTTTTGCAGATGAAAATTTACTAGATCAATAGTATTCACACTGTTTCTGAAACTGTTTTCTTCTTCTGTTATTTAACTTCCGAAAATGCCTCACTTTATATATTCATATATTTTAAATTACTTTTTAGGATATGTAATTTATACTCTTTTATAGGTTGAGGCCAAGAGGGCCTTATCACGGGAGGAACAGCAGACCCCTGCCAGAGCAAGCAATTCCAATGGTAGAAACTCTGGCGGCAGTGGTGGTGGAAACATGAGAACCAAAAAAATTTTTGTTGGGGGATTGCCTCCTACATTGACTGAAGAAGGATTTAAAGAGTACTTTGAGGCTTATGGCCATGTAACTGATGTAGTAGTCATGTATGATCAAAATACTAGGCGTCCACGAGGATTTGGTTTTATATCTTTTGATACTGAAGAGGCTGTTGACAGAGTTTTGCACAAGACGTTTCACGATTTGAATGGTAAACAAGTAGAAGTTAAGCGTGCCCTTCCCAAGGATGCCAATCCAGGTGCAGGTGGCCGTACAATGAGTGGGGGTGCTGGTAGTGGTGGTTATCAGGGTTATGGGTCATCTGGTGGTGTCAATTCAAATTCTTATGATAATCGTATGGATTCCAATAGGTACATGCAATCACAGGGCTCTAGTGGAGGTTTCCCACCATATGGTTCCTCTGGATACAATAATCCTGCATATGGGTATGGTTCATCGAATAATGGTATGGGATATGGTGGTTATGGAAATTACAGTGGTTCAAATACTGGGTTTGGTGCCCCTACAGCAGTAGCCTATGGTAACCCAAATGTTGCCAATGCTGGTTATGGGAGCGGTCCTCAAGGTGGACCTAGAAATTCATGGTCAGGTCAAGCTCCCTCCGGGTATGGAGCCATGGGTTATGGGAATGCAGCTCCTTGGGGTGGTGCTCCTGGTGGAAATGCTGGGGCTGGCAGTGGAGGACCTGGATCTGCACCCACAGGTCATTCTCCTGGTGGAGCCGCTGCTGGGTATGGCAATCAGGGTTATGGATATGGTGGGTTTGGTAATCAAGGTTATGGTTATGGTGGAGGTGATGGCTCATACGGTAGTCAATCTGGTTATGGTACAACTGGAGGACGATCTGGTAGTGCATCAAATAGCAATGTTGGAGGTGGTCCAAGTGGGGGAGAATTACAGGGGAACAATGCTTACATGGGTAATGGCTATGGGGATGCTAATGGAAACACTGGTTATGGAAATGCTGCATGGAGATCTGATGGAGGACAAGTAGGTTATACAGGTGGTTATGCTGGTGGACAAGCTCGACAAGCTCAACAACAGTAATTTGATGATAAAAAAGTGAACTGGATTTCGCCATGTTCTGTGTCTCCCTGTTTGTTTTATGAGAATTGAGATCGATGTTTTCCAGTTGCTTATTAAAAAAAGTTTTCTTGTTGCTGACTGAAGCAGTGGCCCAATTTGGAACACAATGAGCCTGGTGGGGTTGCTTGAATCCAAGTAGCTTGCAGTATTTAATTTTTCTAGTCTAAAATAAGTAGCTGTTTTAGAAGTTTACTTGATGCTTCAGTTATTTAGTATTTTGTTGCCGAACGTAGTTATAATTTGATCTCTTTATGAATGTCTATTTAGCTGTCTGGAATCAATTTTTATCTTTTCACATTGTTTGAGTTGTAACGATTTGTAGTCCTTTTAATTATCAGTGGTTTTATACCTACTACTTTTATTCAGATATTTTTATTTTTCCTCTTGTTCTCTAGTTCATCAGGCATAGATGGTATGAAGAATTAAGTGATAGATGTTTCATTCTTTATCTTACATTTCAAATAGGAATACAAAAGGTTTAGTGTAGAGAGAGTTGTAGTGATAGATGATAGTGTTGGAGCCCTCGCTATTGGGTCGATCACTTCGTATGGTTAGACCTAATCGTAGTCGTAGTTGGCTCTTTAACAATGGCATAATCATTTTCCCCCTTCTATTTGCCCTTGTGTTACAGGAGGGATGCCCGGAGTTGTAAAAGTGGAGTCAAGAGAGTCCACTCATGGCTGAACACAGGCTTCGTAATGAAAGACCGTGTTGGGGATGTGTGTGTTCAGCATTTATGGAACTCGAGGACCTTTAATCGGTTGAAAAATGGATTTACCCCCGGAACTGAATATGTTCTCCTGCAAGGCCTTGCCAGCACTATCAAGTATTTCAAGTCTCTGGCATTGCAAGTCATGAGTTTATAGTAAATCTTCTCAAGGTAGTGGAATCCATACCTTCAAGATTTGGTTATGTAGGATACTTGGTATTGATTATGAGTAGGTATTGATTTGAGGTTCTTTGTTGAAACAGATTCCAATTAAGTTTTAGAGTGAATAAAGTAAAACTTCATAGCCATTTCTCCTGTCATTTAGCTAATAGTTGTCTTTGTAGCTTAGCCTAAATAGAATACTTGTGCGTTTACCTTTAACTATTGGTAAAGTAGCAATTGGCTCAATTTATTCCTTTGCTATTTTGCTTCAAGGTTGAAGTTTCGTCGTAAAGAACTTGATTTTAGAACAGGTGAAAAATTACGATCCTTTTGCTGCCCCTTTGGAGATTTTTAACAGATTTTCGATGCAGTCGGGGCTGATAATGAATCATGTCTTTTTATTCTAGATGCTGTTTCTTTATATGTGCTTATCTTGTTAGAAGAAAAGTGAAAGGATATTTTGAACTTGTAACTTTTTCTTTGGAATTTTGATAAGA ACCCTCAGATTCACCAAAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCCCCTCTTTTCTCTCTCTTTCTTTCTTTGGAGCCCCAGTCGGCTACAAACCCTCTTCCGAAATCCGTAACCCAGAAATCCAAATTTCAATTTTCAGACAGGAACGAAACAAAACCCAGTCGAATCGATTTTCTCCATTGATTTGGGGTTTCTTGAGAATAGAGAAGAGGGAAAAGAAAGGGGCAATGGATTCGGATCAAGGGAAGCTTTTTATTGGTGGGATTTCATGGGAGACTTCTGAGGATAAGCTTAAGGACTACTTTAGCAACTATGGTGAAGTTATGCATACCGTCGTTATGAGGGATAAGATCACTAGCAGACCCAGAGGGTTTGGCTTTGTTGTCTTTTCAGATCCCTCTGTTCTTGATCGAGTTCTTCAGGATAAGCACACTATCGATGGTAAAACGGTTGAGGCCAAGAGGGCCTTATCACGGGAGGAACAGCAGACCCCTGCCAGAGCAAGCAATTCCAATGGTAGAAACTCTGGCGGCAGTGGTGGTGGAAACATGAGAACCAAAAAAATTTTTGTTGGGGGATTGCCTCCTACATTGACTGAAGAAGGATTTAAAGAGTACTTTGAGGCTTATGGCCATGTAACTGATGTAGTAGTCATGTATGATCAAAATACTAGGCGTCCACGAGGATTTGGTTTTATATCTTTTGATACTGAAGAGGCTGTTGACAGAGTTTTGCACAAGACGTTTCACGATTTGAATGGTAAACAAGTAGAAGTTAAGCGTGCCCTTCCCAAGGATGCCAATCCAGGTGCAGGTGGCCGTACAATGAGTGGGGGTGCTGGTAGTGGTGGTTATCAGGGTTATGGGTCATCTGGTGGTGTCAATTCAAATTCTTATGATAATCGTATGGATTCCAATAGGTACATGCAATCACAGGGCTCTAGTGGAGGTTTCCCACCATATGGTTCCTCTGGATACAATAATCCTGCATATGGGTATGGTTCATCGAATAATGGTATGGGATATGGTGGTTATGGAAATTACAGTGGTTCAAATACTGGGTTTGGTGCCCCTACAGCAGTAGCCTATGGTAACCCAAATGTTGCCAATGCTGGTTATGGGAGCGGTCCTCAAGGTGGACCTAGAAATTCATGGTCAGGTCAAGCTCCCTCCGGGTATGGAGCCATGGGTTATGGGAATGCAGCTCCTTGGGGTGGTGCTCCTGGTGGAAATGCTGGGGCTGGCAGTGGAGGACCTGGATCTGCACCCACAGGTCATTCTCCTGGTGGAGCCGCTGCTGGGTATGGCAATCAGGGTTATGGATATGGTGGGTTTGGTAATCAAGGTTATGGTTATGGTGGAGGTGATGGCTCATACGGTAGTCAATCTGGTTATGGTACAACTGGAGGACGATCTGGTAGTGCATCAAATAGCAATGTTGGAGGTGGTCCAAGTGGGGGAGAATTACAGGGGAACAATGCTTACATGGGTAATGGCTATGGGGATGCTAATGGAAACACTGGTTATGGAAATGCTGCATGGAGATCTGATGGAGGACAAGTAGGTTATACAGGTGGTTATGCTGGTGGACAAGCTCGACAAGCTCAACAACAGTAA TLRFTKASLSLSLSLSLSLSPPSFLSLSFFGAPVGYKPSSEIRNPEIQISIFRQERNKTQSNRFSPLIWGFLRIEKREKKGAMDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNGRNSGGSGGGNMRTKKIFVGGLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPGAGGRTMSGGAGSGGYQGYGSSGGVNSNSYDNRMDSNRYMQSQGSSGGFPPYGSSGYNNPAYGYGSSNNGMGYGGYGNYSGSNTGFGAPTAVAYGNPNVANAGYGSGPQGGPRNSWSGQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAAGYGNQGYGYGGFGNQGYGYGGGDGSYGSQSGYGTTGGRSGSASNSNVGGGPSGGELQGNNAYMGNGYGDANGNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ Homology
BLAST of Cucsat.G3784 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 1.6e-29 Identity = 56/71 (78.87%), Postives = 66/71 (92.96%), Query Frame = 0
BLAST of Cucsat.G3784 vs. ExPASy Swiss-Prot
Match: Q96DH6 (RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 3.3e-19 Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 0
BLAST of Cucsat.G3784 vs. ExPASy Swiss-Prot
Match: Q920Q6 (RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1) HSP 1 Score: 96.3 bits (238), Expect = 3.3e-19 Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 0
BLAST of Cucsat.G3784 vs. ExPASy Swiss-Prot
Match: Q9VVE5 (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3) HSP 1 Score: 94.4 bits (233), Expect = 1.2e-18 Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 0
BLAST of Cucsat.G3784 vs. ExPASy Swiss-Prot
Match: O94432 (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC660.15 PE=4 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18 Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 0
BLAST of Cucsat.G3784 vs. NCBI nr
Match: ABY56098.1 (putative heterogeneous nuclear ribonucleoprotein, partial [Cucumis sativus]) HSP 1 Score: 157 bits (398), Expect = 3.94e-47 Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0
BLAST of Cucsat.G3784 vs. NCBI nr
Match: ABY56086.1 (putative heterogeneous nuclear ribonucleoprotein, partial [Cucumis melo]) HSP 1 Score: 156 bits (394), Expect = 1.39e-46 Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0
BLAST of Cucsat.G3784 vs. NCBI nr
Match: KAG6593820.1 (Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 160 bits (406), Expect = 3.85e-43 Identity = 82/113 (72.57%), Postives = 92/113 (81.42%), Query Frame = 0
BLAST of Cucsat.G3784 vs. NCBI nr
Match: XP_023006071.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima]) HSP 1 Score: 156 bits (394), Expect = 3.19e-42 Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0
BLAST of Cucsat.G3784 vs. NCBI nr
Match: XP_008460677.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Cucumis melo]) HSP 1 Score: 156 bits (394), Expect = 3.25e-42 Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0
BLAST of Cucsat.G3784 vs. ExPASy TrEMBL
Match: A0A0A0LLG6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G171930 PE=4 SV=1) HSP 1 Score: 289 bits (740), Expect = 6.31e-93 Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0
BLAST of Cucsat.G3784 vs. ExPASy TrEMBL
Match: B0F828 (Putative heterogeneous nuclear ribonucleoprotein (Fragment) OS=Cucumis sativus OX=3659 GN=HnRNP PE=4 SV=1) HSP 1 Score: 157 bits (398), Expect = 1.91e-47 Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0
BLAST of Cucsat.G3784 vs. ExPASy TrEMBL
Match: B0F812 (Putative heterogeneous nuclear ribonucleoprotein (Fragment) OS=Cucumis melo OX=3656 GN=HnRNP PE=4 SV=1) HSP 1 Score: 156 bits (394), Expect = 6.71e-47 Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0
BLAST of Cucsat.G3784 vs. ExPASy TrEMBL
Match: A0A6J1KWS0 (heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111498928 PE=4 SV=1) HSP 1 Score: 156 bits (394), Expect = 1.54e-42 Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0
BLAST of Cucsat.G3784 vs. ExPASy TrEMBL
Match: A0A6J1H3Z2 (heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111460283 PE=4 SV=1) HSP 1 Score: 156 bits (394), Expect = 1.57e-42 Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0
BLAST of Cucsat.G3784 vs. TAIR 10
Match: AT4G14300.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 130.6 bits (327), Expect = 1.1e-30 Identity = 56/71 (78.87%), Postives = 66/71 (92.96%), Query Frame = 0
BLAST of Cucsat.G3784 vs. TAIR 10
Match: AT2G33410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 120.6 bits (301), Expect = 1.2e-27 Identity = 52/73 (71.23%), Postives = 63/73 (86.30%), Query Frame = 0
BLAST of Cucsat.G3784 vs. TAIR 10
Match: AT5G55550.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 117.9 bits (294), Expect = 7.5e-27 Identity = 49/74 (66.22%), Postives = 63/74 (85.14%), Query Frame = 0
BLAST of Cucsat.G3784 vs. TAIR 10
Match: AT5G55550.3 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 117.9 bits (294), Expect = 7.5e-27 Identity = 49/74 (66.22%), Postives = 63/74 (85.14%), Query Frame = 0
BLAST of Cucsat.G3784 vs. TAIR 10
Match: AT5G55550.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 117.9 bits (294), Expect = 7.5e-27 Identity = 49/74 (66.22%), Postives = 63/74 (85.14%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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