Cucsat.G3784 (gene) Cucumber (B10) v3

Overview
NameCucsat.G3784
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionheterogeneous nuclear ribonucleoprotein 1-like
Locationctg105: 1351419 .. 1355187 (+)
RNA-Seq ExpressionCucsat.G3784
SyntenyCucsat.G3784
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTACCCTCAGATTCACCAAAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCCCCTCTTTTCTCTCTCTTTCTTTCTTTGGAGCCCCAGTCGGCTACAAACCCTCTTCCGAAATCCGTAACCCAGAAATCCAAATTTCAATTTTCAGACAGGAACGAAACAAAACCCAGTCGAATCGATTTTCTCCATTGATTTGGGGTTTCTTGAGAATAGAGAAGAGGGAAAAGAAAGGGGCAATGGATTCGGATCAAGGGAAGCTTTTTATTGGTGGGATTTCATGGGAGACTTCTGAGGATAAGCTTAAGGACTACTTTAGCAACTATGGTGAAGTTATGCATACCGTCGTTATGAGGGATAAGATCACTAGCAGACCCAGAGGGTTTGGCTTTGTTGTCTTTTCAGATCCCTCTGTTCTTGATCGAGTTCTTCAGGATAAGCACACTATCGATGGTAAAACGGTGAGTTACGAATCTTGTTTCTCTGTTCTTCTTTTGATATGTGGAGTTTTTCCCTTTCTGTTTTTTTTTATATATATATTTATAATTACCATGTGGGTTTTCTTTTATTTGACGTTTTTTTTTTTTTTTTTATCATGATGACTCTAGTTGGTGGATATGGATACAACTCATTTCAGTTGTTGTGGGGGGGTTTGATTCCACAATGGCACTAAATAGTTTTCTTTTGGGTGCCAAATGTTTGGTGCTTATTGGTTTTTTAGGGTGGCTTGTATTGATGCGTGTTTAACTTTCGATTCATGTGTTTTCTTTTCTTTGCTTGTTGTTTTTGTTGATTTATCTGTTGGTTTGGTGCATATTTTCTCATGAGGCGAGACATTGACAAAAGGGTCGGTTGTATTATGTAATTTCATTTCAATATGGTTTATGATTTCACTATGACCTACTAGACCCAATCATATTTCGTATTTTGTGTCTTTTCTCTTGGTAGCCAATTGTAGAGTATAGACTTGGAATATTAGAAGTGTGTGGCTATGAATCTGTTGGTTTCAACCGTTAAGTATGTCTCAAATTTTCTTTGCTTAATGTTATTTGTTCTTTTGCAGATGAAAATTTACTAGATCAATAGTATTCACACTGTTTCTGAAACTGTTTTCTTCTTCTGTTATTTAACTTCCGAAAATGCCTCACTTTATATATTCATATATTTTAAATTACTTTTTAGGATATGTAATTTATACTCTTTTATAGGTTGAGGCCAAGAGGGCCTTATCACGGGAGGAACAGCAGACCCCTGCCAGAGCAAGCAATTCCAATGGTAGAAACTCTGGCGGCAGTGGTGGTGGAAACATGAGAACCAAAAAAATTTTTGTTGGGGGATTGCCTCCTACATTGACTGAAGAAGGATTTAAAGAGTACTTTGAGGCTTATGGCCATGTAACTGATGTAGTAGTCATGTATGATCAAAATACTAGGCGTCCACGAGGATTTGGTTTTATATCTTTTGATACTGAAGAGGCTGTTGACAGAGTTTTGCACAAGACGTTTCACGATTTGAATGGTAAACAAGTAGAAGTTAAGCGTGCCCTTCCCAAGGATGCCAATCCAGGTGCAGGTGGCCGTACAATGAGTGGGGGTGCTGGTAGTGGTGGTTATCAGGGTTATGGGTCATCTGGTGGTGTCAATTCAAATTCTTATGATAATCGTATGGATTCCAATAGGTACATGCAATCACAGGGCTCTAGTGGAGGTTTCCCACCATATGGTTCCTCTGGATACAATAATCCTGCATATGGGTATGGTTCATCGAATAATGGTATGGGATATGGTGGTTATGGAAATTACAGTGGTTCAAATACTGGGTTTGGTGCCCCTACAGCAGTAGCCTATGGTAACCCAAATGTTGCCAATGCTGGTTATGGGAGCGGTCCTCAAGGTGGACCTAGAAATTCATGGTCAGGTCAAGCTCCCTCCGGGTATGGAGCCATGGGTTATGGGAATGCAGCTCCTTGGGGTGGTGCTCCTGGTGGAAATGCTGGGGCTGGCAGTGGAGGACCTGGATCTGCACCCACAGGTCATTCTCCTGGTGGAGCCGCTGCTGGGTATGGCAATCAGGGTTATGGATATGGTGGGTTTGGTAATCAAGGTTATGGTTATGGTGGAGGTGATGGCTCATACGGTAGTCAATCTGGTTATGGTACAACTGGAGGACGATCTGGTAGTGCATCAAATAGCAATGTTGGAGGTGGTCCAAGTGGGGGAGAATTACAGGGGAACAATGCTTACATGGGTAATGGCTATGGGGATGCTAATGGAAACACTGGTTATGGAAATGCTGCATGGAGATCTGATGGAGGACAAGTAGGTTATACAGGTGGTTATGCTGGTGGACAAGCTCGACAAGCTCAACAACAGTAATTTGATGATAAAAAAGTGAACTGGATTTCGCCATGTTCTGTGTCTCCCTGTTTGTTTTATGAGAATTGAGATCGATGTTTTCCAGTTGCTTATTAAAAAAAGTTTTCTTGTTGCTGACTGAAGCAGTGGCCCAATTTGGAACACAATGAGCCTGGTGGGGTTGCTTGAATCCAAGTAGCTTGCAGTATTTAATTTTTCTAGTCTAAAATAAGTAGCTGTTTTAGAAGTTTACTTGATGCTTCAGTTATTTAGTATTTTGTTGCCGAACGTAGTTATAATTTGATCTCTTTATGAATGTCTATTTAGCTGTCTGGAATCAATTTTTATCTTTTCACATTGTTTGAGTTGTAACGATTTGTAGTCCTTTTAATTATCAGTGGTTTTATACCTACTACTTTTATTCAGATATTTTTATTTTTCCTCTTGTTCTCTAGTTCATCAGGCATAGATGGTATGAAGAATTAAGTGATAGATGTTTCATTCTTTATCTTACATTTCAAATAGGAATACAAAAGGTTTAGTGTAGAGAGAGTTGTAGTGATAGATGATAGTGTTGGAGCCCTCGCTATTGGGTCGATCACTTCGTATGGTTAGACCTAATCGTAGTCGTAGTTGGCTCTTTAACAATGGCATAATCATTTTCCCCCTTCTATTTGCCCTTGTGTTACAGGAGGGATGCCCGGAGTTGTAAAAGTGGAGTCAAGAGAGTCCACTCATGGCTGAACACAGGCTTCGTAATGAAAGACCGTGTTGGGGATGTGTGTGTTCAGCATTTATGGAACTCGAGGACCTTTAATCGGTTGAAAAATGGATTTACCCCCGGAACTGAATATGTTCTCCTGCAAGGCCTTGCCAGCACTATCAAGTATTTCAAGTCTCTGGCATTGCAAGTCATGAGTTTATAGTAAATCTTCTCAAGGTAGTGGAATCCATACCTTCAAGATTTGGTTATGTAGGATACTTGGTATTGATTATGAGTAGGTATTGATTTGAGGTTCTTTGTTGAAACAGATTCCAATTAAGTTTTAGAGTGAATAAAGTAAAACTTCATAGCCATTTCTCCTGTCATTTAGCTAATAGTTGTCTTTGTAGCTTAGCCTAAATAGAATACTTGTGCGTTTACCTTTAACTATTGGTAAAGTAGCAATTGGCTCAATTTATTCCTTTGCTATTTTGCTTCAAGGTTGAAGTTTCGTCGTAAAGAACTTGATTTTAGAACAGGTGAAAAATTACGATCCTTTTGCTGCCCCTTTGGAGATTTTTAACAGATTTTCGATGCAGTCGGGGCTGATAATGAATCATGTCTTTTTATTCTAGATGCTGTTTCTTTATATGTGCTTATCTTGTTAGAAGAAAAGTGAAAGGATATTTTGAACTTGTAACTTTTTCTTTGGAATTTTGATAAGA

Coding sequence (CDS)

ACCCTCAGATTCACCAAAGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCCCCTCTTTTCTCTCTCTTTCTTTCTTTGGAGCCCCAGTCGGCTACAAACCCTCTTCCGAAATCCGTAACCCAGAAATCCAAATTTCAATTTTCAGACAGGAACGAAACAAAACCCAGTCGAATCGATTTTCTCCATTGATTTGGGGTTTCTTGAGAATAGAGAAGAGGGAAAAGAAAGGGGCAATGGATTCGGATCAAGGGAAGCTTTTTATTGGTGGGATTTCATGGGAGACTTCTGAGGATAAGCTTAAGGACTACTTTAGCAACTATGGTGAAGTTATGCATACCGTCGTTATGAGGGATAAGATCACTAGCAGACCCAGAGGGTTTGGCTTTGTTGTCTTTTCAGATCCCTCTGTTCTTGATCGAGTTCTTCAGGATAAGCACACTATCGATGGTAAAACGGTTGAGGCCAAGAGGGCCTTATCACGGGAGGAACAGCAGACCCCTGCCAGAGCAAGCAATTCCAATGGTAGAAACTCTGGCGGCAGTGGTGGTGGAAACATGAGAACCAAAAAAATTTTTGTTGGGGGATTGCCTCCTACATTGACTGAAGAAGGATTTAAAGAGTACTTTGAGGCTTATGGCCATGTAACTGATGTAGTAGTCATGTATGATCAAAATACTAGGCGTCCACGAGGATTTGGTTTTATATCTTTTGATACTGAAGAGGCTGTTGACAGAGTTTTGCACAAGACGTTTCACGATTTGAATGGTAAACAAGTAGAAGTTAAGCGTGCCCTTCCCAAGGATGCCAATCCAGGTGCAGGTGGCCGTACAATGAGTGGGGGTGCTGGTAGTGGTGGTTATCAGGGTTATGGGTCATCTGGTGGTGTCAATTCAAATTCTTATGATAATCGTATGGATTCCAATAGGTACATGCAATCACAGGGCTCTAGTGGAGGTTTCCCACCATATGGTTCCTCTGGATACAATAATCCTGCATATGGGTATGGTTCATCGAATAATGGTATGGGATATGGTGGTTATGGAAATTACAGTGGTTCAAATACTGGGTTTGGTGCCCCTACAGCAGTAGCCTATGGTAACCCAAATGTTGCCAATGCTGGTTATGGGAGCGGTCCTCAAGGTGGACCTAGAAATTCATGGTCAGGTCAAGCTCCCTCCGGGTATGGAGCCATGGGTTATGGGAATGCAGCTCCTTGGGGTGGTGCTCCTGGTGGAAATGCTGGGGCTGGCAGTGGAGGACCTGGATCTGCACCCACAGGTCATTCTCCTGGTGGAGCCGCTGCTGGGTATGGCAATCAGGGTTATGGATATGGTGGGTTTGGTAATCAAGGTTATGGTTATGGTGGAGGTGATGGCTCATACGGTAGTCAATCTGGTTATGGTACAACTGGAGGACGATCTGGTAGTGCATCAAATAGCAATGTTGGAGGTGGTCCAAGTGGGGGAGAATTACAGGGGAACAATGCTTACATGGGTAATGGCTATGGGGATGCTAATGGAAACACTGGTTATGGAAATGCTGCATGGAGATCTGATGGAGGACAAGTAGGTTATACAGGTGGTTATGCTGGTGGACAAGCTCGACAAGCTCAACAACAGTAA

Protein sequence

TLRFTKASLSLSLSLSLSLSPPSFLSLSFFGAPVGYKPSSEIRNPEIQISIFRQERNKTQSNRFSPLIWGFLRIEKREKKGAMDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNGRNSGGSGGGNMRTKKIFVGGLPPTLTEEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPGAGGRTMSGGAGSGGYQGYGSSGGVNSNSYDNRMDSNRYMQSQGSSGGFPPYGSSGYNNPAYGYGSSNNGMGYGGYGNYSGSNTGFGAPTAVAYGNPNVANAGYGSGPQGGPRNSWSGQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAAGYGNQGYGYGGFGNQGYGYGGGDGSYGSQSGYGTTGGRSGSASNSNVGGGPSGGELQGNNAYMGNGYGDANGNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQ
Homology
[Close]
BLAST of Cucsat.G3784 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.6e-29
Identity = 56/71 (78.87%), Postives = 66/71 (92.96%), Query Frame = 0 

Query: 76  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 135
           MDSDQGKLF+GGISWET EDKL+++F+NYGEV   +VMRDK+T RPRGFGFV+FSDPSVL
Sbjct: 1   MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60

Query: 136 DRVLQDKHTID 147
           DRVLQ+KH+ID
Sbjct: 61  DRVLQEKHSID 71

[Close]
BLAST of Cucsat.G3784 vs. ExPASy Swiss-Prot
Match: Q96DH6 (RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.3e-19
Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 0 

Query: 79  DQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDRV 138
           D GK+FIGG+SW+TS D L+DYFS +GE+   +VMRD  T R RGFGFV F+DP+ +D+V
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 139 L-QDKHTIDGKT 150
           L Q  H +D KT
Sbjct: 79  LGQPHHELDSKT 90

[Close]
BLAST of Cucsat.G3784 vs. ExPASy Swiss-Prot
Match: Q920Q6 (RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.3e-19
Identity = 42/72 (58.33%), Postives = 54/72 (75.00%), Query Frame = 0 

Query: 79  DQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDRV 138
           D GK+FIGG+SW+TS D L+DYFS +GE+   +VMRD  T R RGFGFV F+DP+ +D+V
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 139 L-QDKHTIDGKT 150
           L Q  H +D KT
Sbjct: 79  LGQPHHELDSKT 90

[Close]
BLAST of Cucsat.G3784 vs. ExPASy Swiss-Prot
Match: Q9VVE5 (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-18
Identity = 40/72 (55.56%), Postives = 54/72 (75.00%), Query Frame = 0 

Query: 78  SDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDR 137
           +D GK+FIGG+SW+TS + L+DYF  YG++   +VM+D  T R RGFGFV FSDP+ +D+
Sbjct: 26  NDPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDK 85

Query: 138 VL-QDKHTIDGK 149
           VL Q  H +DGK
Sbjct: 86  VLTQGTHELDGK 97

[Close]
BLAST of Cucsat.G3784 vs. ExPASy Swiss-Prot
Match: O94432 (Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC660.15 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 0 

Query: 68  EKREKKGAMDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFV 127
           +  E+    + + GK+FIGG++WET++D L+DYF  +GEV+   VMRD  T R RGFGF+
Sbjct: 150 DNAEETSPFNREDGKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFL 209

Query: 128 VFSDPSVLDRVLQDKHTIDGK 149
            F +P  ++ V+  +H +DGK
Sbjct: 210 TFKNPKCVNEVMSKEHHLDGK 230

[Close]
BLAST of Cucsat.G3784 vs. NCBI nr
Match: ABY56098.1 (putative heterogeneous nuclear ribonucleoprotein, partial [Cucumis sativus])

HSP 1 Score: 157 bits (398), Expect = 3.94e-47
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0 

Query: 76  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 135
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 136 DRVLQDKHTIDGKTEG 151
           DRVLQDKHTIDGKT G
Sbjct: 61  DRVLQDKHTIDGKTVG 76

[Close]
BLAST of Cucsat.G3784 vs. NCBI nr
Match: ABY56086.1 (putative heterogeneous nuclear ribonucleoprotein, partial [Cucumis melo])

HSP 1 Score: 156 bits (394), Expect = 1.39e-46
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 76  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 135
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 136 DRVLQDKHTIDGKT 149
           DRVLQDKHTIDGKT
Sbjct: 61  DRVLQDKHTIDGKT 74

[Close]
BLAST of Cucsat.G3784 vs. NCBI nr
Match: KAG6593820.1 (Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160 bits (406), Expect = 3.85e-43
Identity = 82/113 (72.57%), Postives = 92/113 (81.42%), Query Frame = 0 

Query: 37  NPEIQISIFRQERNKTQSNRFSPLIWGFLRIEKREKKGAMDSDQGKLFIGGISWETSEDK 96
           +P   IS   QE    +S      I+ F   EK+ +KGAMDSDQGKLFIGGISWETSEDK
Sbjct: 80  SPAPLISRQSQEEQSRES------IFPFGVFEKQREKGAMDSDQGKLFIGGISWETSEDK 139

Query: 97  LKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVLDRVLQDKHTIDGKT 149
           LKD+F++YGEVMHTVVMRDKITS+PRGFGFVVF+DPSVLDRVLQDKHTIDGKT
Sbjct: 140 LKDHFNSYGEVMHTVVMRDKITSKPRGFGFVVFADPSVLDRVLQDKHTIDGKT 186

[Close]
BLAST of Cucsat.G3784 vs. NCBI nr
Match: XP_023006071.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima])

HSP 1 Score: 156 bits (394), Expect = 3.19e-42
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 76  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 135
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 136 DRVLQDKHTIDGKT 149
           DRVLQDKHTIDGKT
Sbjct: 61  DRVLQDKHTIDGKT 74

[Close]
BLAST of Cucsat.G3784 vs. NCBI nr
Match: XP_008460677.1 (PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Cucumis melo])

HSP 1 Score: 156 bits (394), Expect = 3.25e-42
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 76  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 135
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 136 DRVLQDKHTIDGKT 149
           DRVLQDKHTIDGKT
Sbjct: 61  DRVLQDKHTIDGKT 74

[Close]
BLAST of Cucsat.G3784 vs. ExPASy TrEMBL
Match: A0A0A0LLG6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G171930 PE=4 SV=1)

HSP 1 Score: 289 bits (740), Expect = 6.31e-93
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0 

Query: 5   SLSLSLSLSPPSFLSLSFFGAPVGYKPSSEIRNPEIQISIFRQERNKTQSNRFSPLIWGF 64
           SLSLSLSLSPPSFLSLSFFGAPVGYKPSSEIRNPEIQISIFRQERNKTQSNRFSPLIWGF
Sbjct: 36  SLSLSLSLSPPSFLSLSFFGAPVGYKPSSEIRNPEIQISIFRQERNKTQSNRFSPLIWGF 95

Query: 65  LRIEKREKKGAMDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGF 124
           LRIEKREKKGAMDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGF
Sbjct: 96  LRIEKREKKGAMDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGF 155

Query: 125 GFVVFSDPSVLDRVLQDKHTIDGKT 149
           GFVVFSDPSVLDRVLQDKHTIDGKT
Sbjct: 156 GFVVFSDPSVLDRVLQDKHTIDGKT 180

[Close]
BLAST of Cucsat.G3784 vs. ExPASy TrEMBL
Match: B0F828 (Putative heterogeneous nuclear ribonucleoprotein (Fragment) OS=Cucumis sativus OX=3659 GN=HnRNP PE=4 SV=1)

HSP 1 Score: 157 bits (398), Expect = 1.91e-47
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0 

Query: 76  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 135
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 136 DRVLQDKHTIDGKTEG 151
           DRVLQDKHTIDGKT G
Sbjct: 61  DRVLQDKHTIDGKTVG 76

[Close]
BLAST of Cucsat.G3784 vs. ExPASy TrEMBL
Match: B0F812 (Putative heterogeneous nuclear ribonucleoprotein (Fragment) OS=Cucumis melo OX=3656 GN=HnRNP PE=4 SV=1)

HSP 1 Score: 156 bits (394), Expect = 6.71e-47
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 76  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 135
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 136 DRVLQDKHTIDGKT 149
           DRVLQDKHTIDGKT
Sbjct: 61  DRVLQDKHTIDGKT 74

[Close]
BLAST of Cucsat.G3784 vs. ExPASy TrEMBL
Match: A0A6J1KWS0 (heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111498928 PE=4 SV=1)

HSP 1 Score: 156 bits (394), Expect = 1.54e-42
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 76  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 135
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 136 DRVLQDKHTIDGKT 149
           DRVLQDKHTIDGKT
Sbjct: 61  DRVLQDKHTIDGKT 74

[Close]
BLAST of Cucsat.G3784 vs. ExPASy TrEMBL
Match: A0A6J1H3Z2 (heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111460283 PE=4 SV=1)

HSP 1 Score: 156 bits (394), Expect = 1.57e-42
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 76  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 135
           MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL
Sbjct: 1   MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 60

Query: 136 DRVLQDKHTIDGKT 149
           DRVLQDKHTIDGKT
Sbjct: 61  DRVLQDKHTIDGKT 74

[Close]
BLAST of Cucsat.G3784 vs. TAIR 10
Match: AT4G14300.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-30
Identity = 56/71 (78.87%), Postives = 66/71 (92.96%), Query Frame = 0 

Query: 76  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 135
           MDSDQGKLF+GGISWET EDKL+++F+NYGEV   +VMRDK+T RPRGFGFV+FSDPSVL
Sbjct: 1   MDSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVL 60

Query: 136 DRVLQDKHTID 147
           DRVLQ+KH+ID
Sbjct: 61  DRVLQEKHSID 71

[Close]
BLAST of Cucsat.G3784 vs. TAIR 10
Match: AT2G33410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 120.6 bits (301), Expect = 1.2e-27
Identity = 52/73 (71.23%), Postives = 63/73 (86.30%), Query Frame = 0 

Query: 76  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 135
           M+SDQGKLFIGGISW+T E+ L++YFSN+GEV+   VMR+K T RPRGFGFV FSDP+V+
Sbjct: 1   MESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVI 60

Query: 136 DRVLQDKHTIDGK 149
           DRVLQDKH ID +
Sbjct: 61  DRVLQDKHHIDNR 73

[Close]
BLAST of Cucsat.G3784 vs. TAIR 10
Match: AT5G55550.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 117.9 bits (294), Expect = 7.5e-27
Identity = 49/74 (66.22%), Postives = 63/74 (85.14%), Query Frame = 0 

Query: 76  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 135
           M+SD GKLFIGGISW+T E++L+DYFSNYG+V+  V+MRD+ T R RGFGF+VF+DP V 
Sbjct: 1   MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60

Query: 136 DRVLQDKHTIDGKT 150
           +RV+ DKH IDG+T
Sbjct: 61  ERVIMDKHIIDGRT 74

[Close]
BLAST of Cucsat.G3784 vs. TAIR 10
Match: AT5G55550.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 117.9 bits (294), Expect = 7.5e-27
Identity = 49/74 (66.22%), Postives = 63/74 (85.14%), Query Frame = 0 

Query: 76  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 135
           M+SD GKLFIGGISW+T E++L+DYFSNYG+V+  V+MRD+ T R RGFGF+VF+DP V 
Sbjct: 1   MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60

Query: 136 DRVLQDKHTIDGKT 150
           +RV+ DKH IDG+T
Sbjct: 61  ERVIMDKHIIDGRT 74

[Close]
BLAST of Cucsat.G3784 vs. TAIR 10
Match: AT5G55550.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 117.9 bits (294), Expect = 7.5e-27
Identity = 49/74 (66.22%), Postives = 63/74 (85.14%), Query Frame = 0 

Query: 76  MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFSDPSVL 135
           M+SD GKLFIGGISW+T E++L+DYFSNYG+V+  V+MRD+ T R RGFGF+VF+DP V 
Sbjct: 1   MESDLGKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVS 60

Query: 136 DRVLQDKHTIDGKT 150
           +RV+ DKH IDG+T
Sbjct: 61  ERVIMDKHIIDGRT 74

The following BLAST results are available for this feature:
BLAST of Cucsat.G3784 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8W0341.6e-2978.87Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP... [more]
Q96DH63.3e-1958.33RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1[more]
Q920Q63.3e-1958.33RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1[more]
Q9VVE51.2e-1855.56RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=R... [more]
O944322.8e-1844.44Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces pombe (strain... [more]
BLAST of Cucsat.G3784 vs. NCBI nr
Match NameE-valueIdentityDescription
ABY56098.13.94e-4798.68putative heterogeneous nuclear ribonucleoprotein, partial [Cucumis sativus][more]
ABY56086.11.39e-46100.00putative heterogeneous nuclear ribonucleoprotein, partial [Cucumis melo][more]
KAG6593820.13.85e-4372.57Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp... [more]
XP_023006071.13.19e-42100.00heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima][more]
XP_008460677.13.25e-42100.00PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Cucumis melo][more]
BLAST of Cucsat.G3784 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LLG66.31e-93100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G171930 PE=4 SV=1[more]
B0F8281.91e-4798.68Putative heterogeneous nuclear ribonucleoprotein (Fragment) OS=Cucumis sativus O... [more]
B0F8126.71e-47100.00Putative heterogeneous nuclear ribonucleoprotein (Fragment) OS=Cucumis melo OX=3... [more]
A0A6J1KWS01.54e-42100.00heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita maxima OX=3661 GN=LO... [more]
A0A6J1H3Z21.57e-42100.00heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita moschata OX=3662 GN=... [more]
BLAST of Cucsat.G3784 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G14300.11.1e-3078.87RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT2G33410.11.2e-2771.23RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G55550.17.5e-2766.22RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G55550.37.5e-2766.22RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G55550.27.5e-2766.22RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 537..543
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 468..491
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 269..325
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 155..192
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 468..505
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 293..325
NoneNo IPR availablePANTHERPTHR48035:SF2HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1coord: 82..541
NoneNo IPR availablePANTHERPTHR48035HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1coord: 82..541
NoneNo IPR availableCDDcd12325RRM1_hnRNPA_hnRNPD_likecoord: 89..159
e-value: 7.55822E-36
score: 126.161
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 193..265
e-value: 6.0E-25
score: 98.9
coord: 88..159
e-value: 6.0E-20
score: 82.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 89..156
e-value: 1.4E-14
score: 53.7
coord: 194..252
e-value: 6.8E-16
score: 57.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 87..163
score: 16.84124
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 192..269
score: 18.580891
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 191..307
e-value: 4.6E-27
score: 96.8
coord: 72..190
e-value: 1.0E-24
score: 89.2
IPR034131DAZ-associated protein 1, RNA recognition motif 2CDDcd12327RRM2_DAZAP1coord: 190..269
e-value: 3.97897E-44
score: 149.053
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 191..298
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 82..188

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G3784.T2Cucsat.G3784.T2mRNA
Cucsat.G3784.T1Cucsat.G3784.T1mRNA
Cucsat.G3784.T3Cucsat.G3784.T3mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding