Cucsat.G21556 (gene) Cucumber (B10) v3

Overview
NameCucsat.G21556
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description40S ribosomal protein S24
Locationctg944: 922488 .. 924824 (+)
RNA-Seq ExpressionCucsat.G21556
SyntenyCucsat.G21556
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAATTTTAGGTGGCCCTTAATGACGGGCTTCGAAGGAAAGCCCATAACAACAACCCATTATAGCAACAATGGCGGCAACTCCTAGGGTTTCATCACTATAACTCAAGGTTTCATCACTATCTGATTCTTTCCTCTTTGCCGAACCTTCGTCTTCTTGCTCTCTGCTACGATTCACTTCACTTCACTTCATCCCATTCGTCAACGATAATGGCGGACAAGGCAGTCACCATACGAACCCGGAAGTTCATGACCAACCGGCTTCTCTCCAGGAAGCAATTTGTGAGTTTCCGTTAATCACAACGAAAGATTGCTTTGAACTTTGAAGTCTCTCTTGGATTAGTTTCGTCAAGAAAAAAATTCAAAATTCGAGCCTCAGATCTCTATTACGCTTTTTCTTTTGTTTTATAAATTGCTTTAAAGTTTAAGATTCGACAATCCATATTCAAATTAATCAAATCCCGCTGTTTAAGTTATTTTTTGATATGATTCCCATTGGACCTCAGTTTTCATATGTAGCCCAGTTTAGTCCTTTAGTTTTATGTGCGTTCTCTTTGTCGAAAGTATTTACTCCGTTCGTGTCTGCTAACCTTATGTTATAAGTAGCTGACAATTGACTATATAGCTGGTTTTTTTTTTTTTTTTTTACTTTTCCTTTTAATCTTCTTCATTATGTACAACTTTATGTGAATGGTGGCTGCCAATCTATGATTTCATAGTCTAAGTATCTGCCAACCTTGCTGACAAAAAAGAACAAGCATATTTTATGAACAGGCCACGCTTTTCTTTTGTGCTTAGATGAACTGTATGGGTGTTCGTGTCCTTCTTTACACTGCTGGCTGAGAACATTCGGGGACTTCTACTCTTAAAGCCACAACATCATGACTATAGAGTCCAATATTTCCAATTTTTAGGCTTTAATTCTTACGGTTCCTTTTCCGGTTTGATGCAGGTCATTGATGTTCTTCACCCAGGAAGACCTAATGTCTCTAAGGTAAATTTTACTTACAGAAGTTATTGTTCATCTGCTTCAGCATAATTGCATTTCAGCGTGTGGATGCTTTCATAATGAATAAATCCAGCAATTATGTCTCACAGCCAATTTATCACAGTTCATTTTTAGAATTTTTTGCTTTCTTTAGTGTTTTATGCTCATTGCTGGATACATCGTTGAGTTAAATGGTTTTGAGTTTCAAGTATAACCGCATGTTAAATTGTCTGCCATTTGAATTTCACTTTTGTCTTTCTTATTTGAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGATGCAAATGCAATTTTTGTCTTTAAGTTCCGAACTCACTTTGGAGGTGGAAAATCAACTGGGTTCGGTTTGATTTATGATTCTGTTGAAAATGCCAAAAAATATGAGCCCAAGTACAGGCTCATCAGGGTAATTTCTTTTACTTATTAATATTTTATATTTTCATCTTGTGAGTTGTGATTTTGTAGATCTTGATGGAGGACTTCTGTAGAGAATGAAGTAACTAGACAAAAATTGATAATTCTTTTATGAATAGAGGAATATTGCATTATTTGATTTGGAGAAAAAAATGAAGATAGAACCTTGTGGGAATTAAGCAAAATGGGGTAGAGGTGGACCTTTCAGTTTCATTTGAAATTTATCAAAAGGGGTGATGTGGAAAAACATAATGTTGACTTAAATTTGCTGGTGCAAGACGTTTACTCTTTTTAACAGTCATATTTGATAAAAGGCCATGAATCATTATATCTTTGCAATTTTGATTCACTATTTATCAAAGTAGTTTCTGTCTGGATGCAAAAGAGTTGGGTTATTTCTGAAATCAAGTGTTATTTTGTATACAGAATGGGCTTGACACTAAAGTGGAAAAATCAAGGAAGCAAATGAAGGAAAGGAAGAACAGAGCGAAGAAGATTCGTGGAGTAAAGAAAGTGAGTAGAACCTTCTCCTTCTTCTTGTTGGAGTTTCTAGATATGCAAATAACAGAATGTTTAATACTGGCTGCAATTTCTTTTTTTCTTTTTTGTTTTACCAGACAAAGGCCTCAGATGCTGCCAAGGGTGGAAAGAAGAAATGAGTTCACTTCTATGTTTTCGTGCCTAAGTGTTTTTCTCTATCATGTCTTTATTTCATCCCTCTCTAAATTTTAATTCTTAAGTGGTGTTGGGCACTGCCAATGAAATCCATGTCTGGTTGATTATTGACACCAATGTTTTAGCCATTAATTTTGAATTTGGGGAGTTTTTTGCAGGGAACAATTTTGACATTAGTGACCATATATTTTATAGTTATCAAAAGTTTCATTATAAAAAGTGGTTGAAGTTGTGTTTTGCTTCCTCGACTCTTCTGAAAGGCGAGTGAGAGAAATTTGAAAATTGGTTTTTATATATGAGTGATGATGCCTTGATCTTTTGAGCAAAATATGAGGTGAATCAAACCGGTGGACCAGTTCGAGCTTCTCTATCTCTCGCTCACATAGATGAGTTATTTGCCCTCCGCTCCTCTCTCTTTCTCCTGACCCCACTCTCTCT

Coding sequence (CDS)

ATGGCGGACAAGGCAGTCACCATACGAACCCGGAAGTTCATGACCAACCGGCTTCTCTCCAGGAAGCAATTTGTCATTGATGTTCTTCACCCAGGAAGACCTAATGTCTCTAAGGCAGAGCTGAAGGAAAAGTTAGCAAGAATATATGATGTGAAGGATGCAAATGCAATTTTTGTCTTTAAGTTCCGAACTCACTTTGGAGGTGGAAAATCAACTGGGTTCGGTTTGATTTATGATTCTGTTGAAAATGCCAAAAAATATGAGCCCAAGTACAGGCTCATCAGGAATGGGCTTGACACTAAAGTGGAAAAATCAAGGAAGCAAATGAAGGAAAGGAAGAACAGAGCGAAGAAGATTCGTGGAGTAAAGAAAACAAAGGCCTCAGATGCTGCCAAGGGTGGAAAGAAGAAATGA

Protein sequence

MADKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
Homology
[Close]
BLAST of Cucsat.G21556 vs. ExPASy Swiss-Prot
Match: Q9SS17 (40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 4.7e-47
Identity = 96/108 (88.89%), Postives = 104/108 (96.30%), Query Frame = 0 

Query: 3   VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 62
           VIDVLHPGR NVSKAELKEKLAR+Y+VKD NAIFVFKFRTHFGGGKS+GFGLIYD+VE+A
Sbjct: 25  VIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESA 84

Query: 63  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 111
           KK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGVKKTKA DA K
Sbjct: 85  KKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTKAGDAKK 132

[Close]
BLAST of Cucsat.G21556 vs. ExPASy Swiss-Prot
Match: Q8LC83 (40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2)

HSP 1 Score: 185.7 bits (470), Expect = 3.0e-46
Identity = 94/108 (87.04%), Postives = 102/108 (94.44%), Query Frame = 0 

Query: 3   VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 62
           VIDVLHPGR NVSKAELKEKLAR+Y+VKD NAIF FKFRTHFGGGKS+G+GLIYD+VENA
Sbjct: 25  VIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENA 84

Query: 63  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 111
           KK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGVKKTKA D  K
Sbjct: 85  KKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTKAGDTKK 132

[Close]
BLAST of Cucsat.G21556 vs. ExPASy Swiss-Prot
Match: Q962Q6 (40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.8e-29
Identity = 67/108 (62.04%), Postives = 85/108 (78.70%), Query Frame = 0 

Query: 3   VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 62
           V DVLHPG+P VSK E++EKLA++Y V   + +FVF F+T+FGGGKSTGF LIYD+++ A
Sbjct: 25  VCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNFGGGKSTGFALIYDTLDLA 84

Query: 63  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 111
           KK+EPK+RL R+GL  K   +RKQ KERKNR KK+RG KK+K   AAK
Sbjct: 85  KKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSKVGAAAK 131

[Close]
BLAST of Cucsat.G21556 vs. ExPASy Swiss-Prot
Match: Q75K27 (40S ribosomal protein S24 OS=Dictyostelium discoideum OX=44689 GN=rps24 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.0e-27
Identity = 60/94 (63.83%), Postives = 75/94 (79.79%), Query Frame = 0 

Query: 3   VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 62
           V++V+HPG+ NVSK +LK  +A+++ V D   IF+F F+T FGGGKSTGFGLIYD++E A
Sbjct: 25  VVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLFGFKTDFGGGKSTGFGLIYDNLEIA 84

Query: 63  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKK 97
           KKYEPKYRL R GL TK + SRKQ KE+KNR KK
Sbjct: 85  KKYEPKYRLARAGLYTKPQTSRKQRKEKKNRLKK 118

[Close]
BLAST of Cucsat.G21556 vs. ExPASy Swiss-Prot
Match: P62847 (40S ribosomal protein S24 OS=Homo sapiens OX=9606 GN=RPS24 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.0e-27
Identity = 65/108 (60.19%), Postives = 79/108 (73.15%), Query Frame = 0 

Query: 3   VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 62
           VIDVLHPG+  V K E++EKLA++Y     + IFVF FRTHFGGGK+TGFG+IYDS++ A
Sbjct: 24  VIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTHFGGGKTTGFGMIYDSLDYA 83

Query: 63  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK 111
           KK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K       K
Sbjct: 84  KKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVGAGKK 130

[Close]
BLAST of Cucsat.G21556 vs. NCBI nr
Match: XP_004142519.1 (40S ribosomal protein S24-1 [Cucumis sativus] >KGN66808.1 hypothetical protein Csa_007581 [Cucumis sativus])

HSP 1 Score: 213 bits (542), Expect = 5.77e-69
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 3   VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 62
           VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA
Sbjct: 25  VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 84

Query: 63  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 115
           KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
Sbjct: 85  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 137

[Close]
BLAST of Cucsat.G21556 vs. NCBI nr
Match: XP_022933090.1 (40S ribosomal protein S24-1-like [Cucurbita moschata] >XP_022972142.1 40S ribosomal protein S24-1-like [Cucurbita maxima] >XP_023529307.1 40S ribosomal protein S24-1-like [Cucurbita pepo subsp. pepo] >KAG7020892.1 40S ribosomal protein S24-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211 bits (536), Expect = 4.74e-68
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 3   VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 62
           VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA
Sbjct: 25  VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 84

Query: 63  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 115
           KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Sbjct: 85  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 137

[Close]
BLAST of Cucsat.G21556 vs. NCBI nr
Match: XP_008462725.1 (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038878465.1 40S ribosomal protein S24-1-like [Benincasa hispida] >KAA0062600.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa] >TYK29716.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa])

HSP 1 Score: 210 bits (535), Expect = 6.73e-68
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 3   VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 62
           +IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA
Sbjct: 25  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 84

Query: 63  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 115
           KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Sbjct: 85  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 137

[Close]
BLAST of Cucsat.G21556 vs. NCBI nr
Match: XP_004139219.1 (40S ribosomal protein S24-1 [Cucumis sativus] >KGN60830.1 hypothetical protein Csa_019211 [Cucumis sativus])

HSP 1 Score: 209 bits (533), Expect = 1.36e-67
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 0 

Query: 3   VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 62
           VIDVLHPGRPNVSKAELKEKL RIYDVKD NAIFVFKFRTHFGGGKSTGFGLIYDSVENA
Sbjct: 25  VIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENA 84

Query: 63  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 115
           KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
Sbjct: 85  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 137

[Close]
BLAST of Cucsat.G21556 vs. NCBI nr
Match: KAG6588329.1 (40S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 211 bits (536), Expect = 1.50e-67
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 3   VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 62
           VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA
Sbjct: 60  VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 119

Query: 63  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 115
           KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Sbjct: 120 KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 172

[Close]
BLAST of Cucsat.G21556 vs. ExPASy TrEMBL
Match: A0A0A0LYE3 (40S ribosomal protein S24 OS=Cucumis sativus OX=3659 GN=Csa_1G696420 PE=3 SV=1)

HSP 1 Score: 213 bits (542), Expect = 2.79e-69
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 3   VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 62
           VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA
Sbjct: 25  VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 84

Query: 63  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 115
           KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK
Sbjct: 85  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 137

[Close]
BLAST of Cucsat.G21556 vs. ExPASy TrEMBL
Match: A0A6J1I401 (40S ribosomal protein S24 OS=Cucurbita maxima OX=3661 GN=LOC111470770 PE=3 SV=1)

HSP 1 Score: 211 bits (536), Expect = 2.29e-68
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 3   VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 62
           VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA
Sbjct: 25  VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 84

Query: 63  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 115
           KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Sbjct: 85  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 137

[Close]
BLAST of Cucsat.G21556 vs. ExPASy TrEMBL
Match: A0A6J1F3Y6 (40S ribosomal protein S24 OS=Cucurbita moschata OX=3662 GN=LOC111439823 PE=3 SV=1)

HSP 1 Score: 211 bits (536), Expect = 2.29e-68
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 3   VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 62
           VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA
Sbjct: 25  VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 84

Query: 63  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 115
           KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Sbjct: 85  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 137

[Close]
BLAST of Cucsat.G21556 vs. ExPASy TrEMBL
Match: A0A5D3E1B6 (40S ribosomal protein S24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3607G00280 PE=3 SV=1)

HSP 1 Score: 210 bits (535), Expect = 3.26e-68
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 3   VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 62
           +IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA
Sbjct: 25  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 84

Query: 63  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 115
           KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Sbjct: 85  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 137

[Close]
BLAST of Cucsat.G21556 vs. ExPASy TrEMBL
Match: A0A1S3CHL4 (40S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103501023 PE=3 SV=1)

HSP 1 Score: 210 bits (535), Expect = 3.26e-68
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 3   VIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 62
           +IDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA
Sbjct: 25  IIDVLHPGRPNVSKAELKEKLARIYDVKDANAIFVFKFRTHFGGGKSTGFGLIYDSVENA 84

Query: 63  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKGGKKK 115
           KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAK GKKK
Sbjct: 85  KKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 137

The following BLAST results are available for this feature:
BLAST of Cucsat.G21556 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SS174.7e-4788.8940S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1[more]
Q8LC833.0e-4687.0440S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2[more]
Q962Q65.8e-2962.0440S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1[more]
Q75K277.0e-2763.8340S ribosomal protein S24 OS=Dictyostelium discoideum OX=44689 GN=rps24 PE=3 SV=... [more]
P628477.0e-2760.1940S ribosomal protein S24 OS=Homo sapiens OX=9606 GN=RPS24 PE=1 SV=1[more]
BLAST of Cucsat.G21556 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004142519.15.77e-69100.0040S ribosomal protein S24-1 [Cucumis sativus] >KGN66808.1 hypothetical protein C... [more]
XP_022933090.14.74e-6899.1240S ribosomal protein S24-1-like [Cucurbita moschata] >XP_022972142.1 40S riboso... [more]
XP_008462725.16.73e-6898.23PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038878465.1 40S riboso... [more]
XP_004139219.11.36e-6798.2340S ribosomal protein S24-1 [Cucumis sativus] >KGN60830.1 hypothetical protein C... [more]
KAG6588329.11.50e-6799.1240S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Cucsat.G21556 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYE32.79e-69100.0040S ribosomal protein S24 OS=Cucumis sativus OX=3659 GN=Csa_1G696420 PE=3 SV=1[more]
A0A6J1I4012.29e-6899.1240S ribosomal protein S24 OS=Cucurbita maxima OX=3661 GN=LOC111470770 PE=3 SV=1[more]
A0A6J1F3Y62.29e-6899.1240S ribosomal protein S24 OS=Cucurbita moschata OX=3662 GN=LOC111439823 PE=3 SV=... [more]
A0A5D3E1B63.26e-6898.2340S ribosomal protein S24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3CHL43.26e-6898.2340S ribosomal protein S24 OS=Cucumis melo OX=3656 GN=LOC103501023 PE=3 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.3370coord: 1..128
e-value: 7.2E-58
score: 196.0
NoneNo IPR availablePANTHERPTHR10496:SF1840S RIBOSOMAL PROTEIN S24coord: 1..126
IPR001976Ribosomal protein S24ePFAMPF01282Ribosomal_S24ecoord: 25..103
e-value: 1.4E-35
score: 121.1
IPR001976Ribosomal protein S24ePANTHERPTHR1049640S RIBOSOMAL PROTEIN S24coord: 1..126
IPR001976Ribosomal protein S24eHAMAPMF_00545Ribosomal_S24ecoord: 4..106
score: 19.675739
IPR018098Ribosomal S24e conserved sitePROSITEPS00529RIBOSOMAL_S24Ecoord: 66..88
IPR012678Ribosomal protein L23/L15e core domain superfamilySUPERFAMILY54189Ribosomal proteins S24e, L23 and L15ecoord: 6..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G21556.T1Cucsat.G21556.T1mRNA
Cucsat.G21556.T2Cucsat.G21556.T2mRNA
Cucsat.G21556.T9Cucsat.G21556.T9mRNA
Cucsat.G21556.T4Cucsat.G21556.T4mRNA
Cucsat.G21556.T10Cucsat.G21556.T10mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005829 cytosol
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome