Cucsat.G21253 (gene) Cucumber (B10) v3

Overview
NameCucsat.G21253
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionserine/arginine-rich splicing factor SR34A
Locationctg910: 37010 .. 39293 (+)
RNA-Seq ExpressionCucsat.G21253
SyntenyCucsat.G21253
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGAATTAAGTTGATAATCACATATTTGGAAATTAGGTCCCTTTACCTTATTCCCGCGCCTGTGGCTGTGGTATATTATCTTCTGTTACGACCTAACCCTAAGCCCTTCGTCATCCCGTCCGGTCGCTGCGAAGAAAGCAGAGAAGGATCCCCAAGTCATCAACTCCTCTTTCACCCCTTGCTGAGCCGCAGAGCCGTCATTATCGCTTTTCACTTTCTCGGTGCAGTTTACTTCTTCAGTTTCTCAATCTTTGGTATGTTGCTCTCGTTAGGCGTTGCTTATACTTGTATCTATTCACTGTGTCAGTGTGATATCAAAATTAGCTTCATATCCCTGCTGAGGAATTTCATTACTCAGACTGCTCCGTTTTCGAGTGTTTCACGGTGGGTCGGACGTTGGAAATCTTGGATTTTCATTTTGCTCTGTCAGCTCCCTCGTTTTCTGGAATAGGGTGCGGTATTTAGTTGGTTTAAGGTGAAATACATTTTCCAATAACAACATTCCTCAACTTTTTGGTTCCTCCAATTATTTATTTATTTGTTTCATTCCACTTTCTTGTACCTTGGAAATCATAATTTTGTATTTGACTGTTATCTTCGCACCTGGGCTGTAAGAGCCAGCACTAGAAGGAATCAACAACTTAGTACCATGCCAACGTTTGAGTTTTATTTTCTTAATTATGCCTTTGTGCACCCCGTGTACCGAATTGGCCCAAAGAATTTCTTCAATTATGTCCTATTAGTTGGGATTCATGGACTAAAGATCGTGACTCAGAGACCCACCTTCTTGAATTTTGTTTCCATTTTCTTAATCGATAGAGCATTGTTGTATTTCTGTATCAAATTTTTTTTGTAGTTTTTCCACTGACGACCTTGGATAAGCTGGACCAAGAATATTAGCTACTTATAATATAACACCAATGTTTTGTATGACAATGTCCTTAAATATGTTGATATGAATAGAAGAAAACATTTTCTCTGTTCCTCTTTGGAATCGAATGCAACATAATTGAGGATTTCACCGATCATCTAAAGTTAATCAACAGAGGACATCCTACATATTTTTTCAGGACTGTTTTCTCAATGCTATTAAGAGAGCTGAGTAAGGTAAAATTAATCATGTATGTCACTTACCTCATCTCATGACACAGATGCTTTCTTTATGATAGATGACAAGCGCTTCGACAAATATGAGCATTGCAATCATACATAGGGATATAGAGAGGGAATGGGAGGATCATTGTGGAGTTATGGGTATTATTTTTATAAATGGAGCTACTTGCTCACTCTCAGAAGAGCTATGCACTGCTAAATTTCTGGAGAGGATGAGGAGATACAAAATTTATTTCAATATTATTATACCTTTGGAGCATCTGGGAGCAAATGAGCAATGGAATTGTGGAGCACGGCTCACATCGAGGATTGCTCTCTTGGTTTGCTTCATTGTTTATTGTTCTGCCTTATTTGGAGAGTAAAATTGATGATGCCAATGGCAGTTGGTTATGGTGGAAGATGGTGTTTCTTTCCTTTTGATGATTCGTTGAACAGATTGATGATGTTATGACATATGTGTGCAGGAATAATATTCAAACTTCCTCGGAGTAATTTGTTGCCTTGAAGATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCCTCAGACATAAAAGAGTATGAAATTGAAGATTTGTTCTACAAGGTAGATTTCCTTGGTCTTAGCTAATTCTTTTCATGGTGTCTGTGCAAATTGTTATTTTCTCTGTTCATATTTTAGATGTGAAAGCTCCTTGCATTGGTGATCTACAGCTGTTCAAATTTATTTTTGTTTTAGTTCTGAAAAAATCTACTACATGTATTTCCTGGTTTCAGCAGATTTAAGGTTTAATTTGTTTGAACTTACAATTTTTATGTCTACATGATTGATATTTTCTTGGCAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCACGCCCTCCATGTTATTGTTTTGTGGAGGTATCATGTTTTTTTTAATCTTTAGTTTGTACATACTTTTAGCTGTATTTTCAAAGTTCATGATATTATGTGCTTTCTGTTGTTAGTTTGAGAGTGTTAGGGATGCAGAAGATGCAATCAGAGCTCGTGATGGATATAATTTTGATGGTTGTCGTCTAAGGGTATCAACTAAGTTTTCTTTTGCCTTCATTTCCTGATTCCTGTCATTTTTGTTGTATTCATATGTTCAGTTTTTCAAATAGGTTGAGCTTGCACATGGTGGTAGGGGCCCTTCATCTAGTGATCGTCGTAGTAGTTATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGA

Coding sequence (CDS)

ATGAGTAGTCGTTTTTCTCGCACAATATATGTTGGAAACTTGCCCTCAGACATAAAAGAGTATGAAATTGAAGATTTGTTCTACAAGTATGGCCGAATTTTGGATATTGAATTGAAGATTCCACCACGCCCTCCATGTTATTGTTTTGTGGAGTTTGAGAGTGTTAGGGATGCAGAAGATGCAATCAGAGCTCGTGATGGATATAATTTTGATGGTTGTCGTCTAAGGGTTGAGCTTGCACATGGTGGTAGGGGCCCTTCATCTAGTGATCGTCGTAGTAGTTATGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGA

Protein sequence

MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGG
Homology
[Close]
BLAST of Cucsat.G21253 vs. ExPASy Swiss-Prot
Match: A2RVS6 (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR34A PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.8e-45
Identity = 83/99 (83.84%), Postives = 90/99 (90.91%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MS RFSR+IYVGNLP DI+E+EIED+FYKYGRI+DIELK+PPRPPCYCFVEFE  RDAED
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 100
           AI+ RDGYN DGCRLRVELAHGGRG SSSDRR  YGGGG
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGG 99

[Close]
BLAST of Cucsat.G21253 vs. ExPASy Swiss-Prot
Match: Q9XFR5 (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR30 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 3.9e-34
Identity = 71/95 (74.74%), Postives = 81/95 (85.26%), Query Frame = 0 

Query: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
          MSSR++RTIYVGNLP DI++ E+EDLFYKYG I+DI+LKIPPRPP Y FVEFE  RDA+D
Sbjct: 1  MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSS-DRRSS 95
          AI  RDGY+FDGCRLRVE+AHGGR  S S DR SS
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRYSS 95

[Close]
BLAST of Cucsat.G21253 vs. ExPASy Swiss-Prot
Match: O22315 (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR34 PE=1 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 6.7e-34
Identity = 70/99 (70.71%), Postives = 80/99 (80.81%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR SRT+YVGNLP DI+E E+EDLF KYG ++ I+LK+PPRPP Y FVEF+  RDAED
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 100
           AI  RDGY+FDG RLRVELAHGGR  SS D R S+ GGG
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGR-RSSDDTRGSFNGGG 98

[Close]
BLAST of Cucsat.G21253 vs. ExPASy Swiss-Prot
Match: F4JHI7 (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR34B PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 9.7e-33
Identity = 71/99 (71.72%), Postives = 78/99 (78.79%), Query Frame = 0 

Query: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
           MSSR SRTIYVGNLP DI+E E+EDLF KYG ++ I+LKIPPRPP Y FVEFE  RDA+D
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 100
           AI  RDGY+FDG  LRVELAHGGR  SS D R SY G G
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGR-RSSHDARGSYSGRG 98

[Close]
BLAST of Cucsat.G21253 vs. ExPASy Swiss-Prot
Match: Q7SXP4 (Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-21
Identity = 53/91 (58.24%), Postives = 63/91 (69.23%), Query Frame = 0 

Query: 9   IYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAEDAIRARDGY 68
           IYVGNLP DI+  ++ED+FYKYG I DI+LK     P + FVEFE  RDAEDA+ ARDGY
Sbjct: 17  IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76

Query: 69  NFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 100
           ++DG RLRVE    GRG      R  +GGGG
Sbjct: 77  DYDGYRLRVEFPRSGRGMG----RGGFGGGG 103

[Close]
BLAST of Cucsat.G21253 vs. NCBI nr
Match: XP_022137780.1 (serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137781.1 serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137782.1 serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137783.1 serine/arginine-rich splicing factor SR34A [Momordica charantia])

HSP 1 Score: 205 bits (522), Expect = 2.76e-64
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
          MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED
Sbjct: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99
          AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG
Sbjct: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99

[Close]
BLAST of Cucsat.G21253 vs. NCBI nr
Match: XP_011654574.2 (serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654575.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654577.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654579.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654580.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654581.2 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_031741184.1 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_031741186.1 serine/arginine-rich splicing factor SR34A [Cucumis sativus] >KAE8647793.1 hypothetical protein Csa_000628 [Cucumis sativus])

HSP 1 Score: 205 bits (522), Expect = 6.15e-64
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
          MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED
Sbjct: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99
          AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG
Sbjct: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99

[Close]
BLAST of Cucsat.G21253 vs. NCBI nr
Match: XP_038907230.1 (serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907231.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907232.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907233.1 serine/arginine-rich splicing factor SR34A [Benincasa hispida])

HSP 1 Score: 204 bits (519), Expect = 8.88e-64
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
          MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99
          AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG
Sbjct: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99

[Close]
BLAST of Cucsat.G21253 vs. NCBI nr
Match: XP_022974349.1 (serine/arginine-rich splicing factor SR34A-like isoform X4 [Cucurbita maxima])

HSP 1 Score: 202 bits (514), Expect = 4.93e-63
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
          MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99
          AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG
Sbjct: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99

[Close]
BLAST of Cucsat.G21253 vs. NCBI nr
Match: XP_022974348.1 (serine/arginine-rich splicing factor SR34A-like isoform X3 [Cucurbita maxima])

HSP 1 Score: 202 bits (514), Expect = 5.08e-63
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
          MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99
          AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG
Sbjct: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99

[Close]
BLAST of Cucsat.G21253 vs. ExPASy TrEMBL
Match: A0A6J1C7M8 (serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC111009138 PE=4 SV=1)

HSP 1 Score: 205 bits (522), Expect = 1.34e-64
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
          MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED
Sbjct: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99
          AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG
Sbjct: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99

[Close]
BLAST of Cucsat.G21253 vs. ExPASy TrEMBL
Match: A0A0A0KLR9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1)

HSP 1 Score: 205 bits (522), Expect = 1.60e-64
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
          MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED
Sbjct: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99
          AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG
Sbjct: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99

[Close]
BLAST of Cucsat.G21253 vs. ExPASy TrEMBL
Match: A0A6J1IHC8 (serine/arginine-rich splicing factor SR34A-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111472973 PE=4 SV=1)

HSP 1 Score: 202 bits (514), Expect = 2.39e-63
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
          MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99
          AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG
Sbjct: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99

[Close]
BLAST of Cucsat.G21253 vs. ExPASy TrEMBL
Match: A0A6J1IFY5 (serine/arginine-rich splicing factor SR34A-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111472973 PE=4 SV=1)

HSP 1 Score: 202 bits (514), Expect = 2.46e-63
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
          MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99
          AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG
Sbjct: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99

[Close]
BLAST of Cucsat.G21253 vs. ExPASy TrEMBL
Match: A0A6J1IB38 (serine/arginine-rich splicing factor SR34A-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472973 PE=4 SV=1)

HSP 1 Score: 202 bits (514), Expect = 2.53e-63
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = 0 

Query: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60
          MSSRFSRTIYVGNLPSDIKEYEIEDLF+KYGRILDIELKIPPRPPCYCFVEFE+VRDAED
Sbjct: 1  MSSRFSRTIYVGNLPSDIKEYEIEDLFHKYGRILDIELKIPPRPPCYCFVEFENVRDAED 60

Query: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99
          AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG
Sbjct: 61 AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGG 99

The following BLAST results are available for this feature:
BLAST of Cucsat.G21253 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A2RVS63.8e-4583.84Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana OX=3702 GN=SR... [more]
Q9XFR53.9e-3474.74Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana OX=3702 GN=SR3... [more]
O223156.7e-3470.71Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana OX=3702 GN=SR3... [more]
F4JHI79.7e-3371.72Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana OX=3702 GN=SR... [more]
Q7SXP41.0e-2158.24Serine/arginine-rich splicing factor 1A OS=Danio rerio OX=7955 GN=srsf1a PE=2 SV... [more]
BLAST of Cucsat.G21253 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022137780.12.76e-64100.00serine/arginine-rich splicing factor SR34A [Momordica charantia] >XP_022137781.1... [more]
XP_011654574.26.15e-64100.00serine/arginine-rich splicing factor SR34A [Cucumis sativus] >XP_011654575.2 ser... [more]
XP_038907230.18.88e-6498.99serine/arginine-rich splicing factor SR34A [Benincasa hispida] >XP_038907231.1 s... [more]
XP_022974349.14.93e-6397.98serine/arginine-rich splicing factor SR34A-like isoform X4 [Cucurbita maxima][more]
XP_022974348.15.08e-6397.98serine/arginine-rich splicing factor SR34A-like isoform X3 [Cucurbita maxima][more]
BLAST of Cucsat.G21253 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C7M81.34e-64100.00serine/arginine-rich splicing factor SR34A OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A0A0KLR91.60e-64100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138510 PE=4 SV=1[more]
A0A6J1IHC82.39e-6397.98serine/arginine-rich splicing factor SR34A-like isoform X4 OS=Cucurbita maxima O... [more]
A0A6J1IFY52.46e-6397.98serine/arginine-rich splicing factor SR34A-like isoform X3 OS=Cucurbita maxima O... [more]
A0A6J1IB382.53e-6397.98serine/arginine-rich splicing factor SR34A-like isoform X2 OS=Cucurbita maxima O... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 8..78
e-value: 3.1E-22
score: 89.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..76
e-value: 2.2E-19
score: 69.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 7..82
score: 16.568354
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..100
e-value: 6.0E-27
score: 96.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..100
NoneNo IPR availablePANTHERPTHR23147:SF63SERINE/ARGININE-RICH SPLICING FACTOR SR34Acoord: 2..100
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 2..100
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 6..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G21253.T1Cucsat.G21253.T1mRNA
Cucsat.G21253.T7Cucsat.G21253.T7mRNA
Cucsat.G21253.T5Cucsat.G21253.T5mRNA
Cucsat.G21253.T4Cucsat.G21253.T4mRNA
Cucsat.G21253.T11Cucsat.G21253.T11mRNA
Cucsat.G21253.T9Cucsat.G21253.T9mRNA
Cucsat.G21253.T3Cucsat.G21253.T3mRNA
Cucsat.G21253.T2Cucsat.G21253.T2mRNA
Cucsat.G21253.T10Cucsat.G21253.T10mRNA
Cucsat.G21253.T8Cucsat.G21253.T8mRNA
Cucsat.G21253.T12Cucsat.G21253.T12mRNA
Cucsat.G21253.T15Cucsat.G21253.T15mRNA
Cucsat.G21253.T13Cucsat.G21253.T13mRNA
Cucsat.G21253.T17Cucsat.G21253.T17mRNA
Cucsat.G21253.T16Cucsat.G21253.T16mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016607 nuclear speck
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding