Cucsat.G20639 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G20639
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	PHD finger protein EHD3-like
Location	ctg62: 261314 .. 267644 (-)
RNA-Seq Expression	Cucsat.G20639
Synteny	Cucsat.G20639

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTCTACTGCCCTCCCGCCTCTTGGATTTTGGAGTTTCCATTCCAGTTGCATTTTCTCTACACCACATTTTCTTTCTTTGCTCAAGTATGTCTCTCTCTCTCTCTCTCTCTCTCTCTTAATCTCTTGTTTCTCTTCATTCTGTTTATTCTCTTTTAAATTCATTTTTCTTTGATATATGTTTGGTTCCTGAGAAAACTGTGCTGGGAAACGAAGAAGCATCGAGTGTTTTCGATTTCTGTAGCTCATTATTCAGCATTTTGTTTAGGAACTACTGGATTAGTTTAAGTTAACTGTTTATTTGTTTAATACGTTGAACTCAAGGTATTTTCAGACACCGGAAGTTGAAGAGAGGGTTTTACTGCCAGTGGTATGTATATTTTTGGTTTTTTTTTTATAAAAAAATAAATTTTCTTATCAAATGGAACATATGTCTCCAAGTGAACTAACTGTGCTTTTCGGTTCCTATCAGTAGTTTTGCGAAGCTTGGGTGTGTGGATTTGACGGGAATTTGCAGAATCTAGTAACACATGCCACCATCGGAACCCTAATTATATCCGGAATTTAGGGTTTTTATCGTGCCGCGCAGATGGTTATTGAAGATGGGAAAAGCAATGGCGATGGCTTTCGAACTTACAAGAGGCGGAAGCAGACTAGGTTGACTTCTGGGAGTGAATGCGATGAAGATATAAAGACTCACGTTGAAGCTGCTGGTCAACTTGTGGTTCGGGTTTCTCTCTCTCCATTTCAATTAATTATGTGCACCTATTCCACTCCAAATTAGTTTTTCCTTGTGTTTCTTTCTACTTTTTTTTTGGATTTAAACTTGGCCTCGTACTTGTAGTAAATAGACTGTAAGTTCTATGAGATGTAGCTAAACATGAAACCTGTTAAATTTTTAGAAGTATCAAGGAGAAGTCAGAACTTGAAATTTTGGGTTCTGCACACAGAATTTAACCTTTGAACTTTATAAAACTTAAGGACGTCTACATCTACTTTAAGTGCATTTGTTCTCAAGGTATGAGGGTGGTTAGGGAAAGCTGTTCATCCACTTTCAAATTTTTCATTGTCATACTACCTCATACTAGGTATAGAACTGTTAGAAACCAGGGTAGTTATGAGATGTCTTTGTTCCACATTGGATATAATGGGCTGACCAGCGTGGTACTTAAGTGGCTTGGCTCTCCCACCCCAATAGCTGACTTTTGGGATGTGGTTTTCCAAGGTGCTTAAGTACCTAACAATGGTATTAAAGTTGATTGTTGACGTTTCAGAGTGGAACCGTCGAAGTGTTCTGACTGGGCATGGTTCCGAGTGAAGGACCACTGGAGTAGCCAATGGGACGTCGACTTTCCGTGGATGGGATATTGTTAGGAACCAAGGTAGTTATGGTATGATATTTGCCCACATTGGTTGGAATGTGATGACCAATGTGGTACTTAAGTGACTTTTTCTTCCATCCCAATAGCTTTTGGGGTGTGGTTCTCCAAGGTGCTTAAGTACCTAACAAAATATTGTCGGATGGTAGGATACTTGGAATGTAGAGTTGCTGAAACCATATTCAATGTGATGAAATCCTTCAAGATTTACAACATTCTTTTGCTTTAGGAATTTGTAAGAAAAAATTAATGCGTTGATTGTTTTTTGAGTGGAATGAGTGGTTTAGTTGTCATATAGTTTTCAAGTATACTAGGGATTGTACATGTGTGGAGCCCTTGCCCTTGCGTTTTGGTAGGTCTTTGGTGGATTTTTTTATCCAATTCCTTATTATAATTTGTATTTTATATATGTGTTTTGTTAGATGGTATATAATTAAATTCACCTTCATCCACTAGCTTAAGCTTTTGGGTTTATTGGTCAATAAAAATGATATCAGAGCAGGTGGTCCAGATTGGTCCTATGCTCAAGCCCCTATATTGTTGTTTCATCTACATTTAATATTGATTTCCACTTGTTGGACATTCTTCGTATTTCAAGTTCACAAGTGAGGGTGAGTATTAGATGATATATAATTAAATTTACCTTTACCCACTTGCTTAAGCTTTAGGGTTTTTTTTTTCTTTTTTTTGGTGATTTAAGATATATATATATATATTCCAAAATAGAAAATAAAAATAAAGAAACTGTATGTTCAACAATAAAATACAGTTGTGATGAGTTAAGCACTAATTATTTGTTTCTAATTGCAATTTACGAAGTGATTATGGAAATTGAATTTTGAGACAGGATCAAGTTGTTTGCCAATAGAATAGGCATGTCAAGATTTTTGTGGTTTTTTCTTTAGAATTTTATTTTGCTGAAATTCTTCCGCAAGTTTCTTTATTCAGATTTTCCAACAAAGTGAAAAGTTCACATATGTGACGGTTGACACATGGATTTTCTTTTGTAACATTTGATAAATAATTTCTCATAGGTTTTCTTTTTTCTTATGTGATTGTGCATTTCTTTCTTTTGGAAAGGATACTGAAACTTTTCATGAAATAAATGAAAAGAGACTAATGCTCAATAAATGAGATAGAAGAAGCTAAAAGCAAAAAGAGAAGAAAACATCAAACCTTAGACTTAGAGGAAGTGAAAGTTGATTCAGTTCCTGAAAGTCCTAAAAGACAGCAAAGGGTTGCCTTTAATAATTTGTAATTCAGAGCACTGAGACCTTATTATCTTTGTTGAAAGAAAACTTTGTCTTGAACATCCTGCAACTACTTGAAATAAGACTTCAAAATTCTGAGTTTCGAGAAAAGGACAAAACCCGGCCGACCCCTCAAAATATCATTGAAAGAAAGAAAAATCAGTCGATGACTTCTAGTCTCTCTTTCAAAGACCCATCATATAAAAATAAAATTGCCATCAATGCACCAAGAAACATCTTAGTAGAAAGAATGTACCCTCCTTTTGACTTATGGGATTGTATTTTATCACCTGGTATTTTTGAGATGATTAACATTTCTTTCATGTTTGTTTGAAAAGCTAAGGGTCTATTTAGTATCTCATCAAGAGGCAATTTTGTTTTCTAACTCATAAACATTGAGCAAAATGGATTCATTGAACCTTGTTTGGTGGATTTATTTTTGAAGATGATATTTGAACTCTATGACTTAGAGAATAGAGATATTGAGAACATTATTTTCATATTTCTAGTATTGTCCGCCACCAAATCTGCTACTAAAAAATAGAGTGAACATGGAATACAACTGTCTTCCATTATGTCTCTTATTTTCAATACCTATCTCAGCCTTGGGACTAAGATCAAGTGTAGTGTGTTCTTATTAGTTTAAATCCCTTTATTTTCAAATTTATGTTGTTTTGGTCCCTAACCAAATGCCCCATAGGTTAGGTAGAAGTTCCATTTTTTTCTTCCTTGATGGTGTTTGGGAAAATTATTTCATTTATTGCATTCTAAGGAGAAAGCTTGCAACGGTGCTTCCAACTACCACAGTGTTATTTGTGAAGACGTGGCTAAGGATGTATTCTCTTCCATTATTTGGAGCCTAGTTCTTTTAAAGCTTTGATGCTTATTGGGTGCATGCTAAGACCAAATTATTTCAATCTTGATGTTATTAGATACTTATGTTTAGGGTGATAGGAACATTGTTTAGATAGGAGTTCAGACATGCTTGACAAAGAAATAGGAACCTATATTTTACTTTAATTGACTGGCACATTATTATAGGAAATGAGGACCTTGTCAAACTGAAGGACATAAAAATAGAGTACTTTTTATTTATATATCTATAAGAAGATTTAAACATGGTTATCTATTCATTTATCTATGACAGTGATTTTCTTAATGAGATTATCTGTACCTAATTTCTAAACACTTCACTGCTGCTGTTAGAATTCAAAAGCATTACAGTTTTTTGTTGTTTGTGTTAAATTTGGTAGTACGGGGTTCCATCTCAAAACCAATTGGCAATGAGAGGAGTAGCCCATCTACCTTATATGGAGTATGAGTCCCCTTGGTTTTTCCAATGTGGGACTCTCAACTTCTCCAACATGCCCCCTCAAGATGGTGCCTCTTTGGTTTCACCTATCTTGGACCAAATACCCGTTTGGGTTTAATGGGCTCTGATACCATGTTAAATTTGGTAGTACGGGGTTCCATCTCAAAACCAATTGGCAATGAGAGGAGTAGCCCATCTACCTTATATGGAGTATGAGTCCCCTTGGTTTTTCCAATGTGGGACTCTCAACTTCTCCAACAGTTTGAAGTTTTGGTTTTGGTTTTGGGCCCACTTTGTTTTGATATGGGAGACTTTGCATGCCTCTATATTTGCTTCAGGGACGTCAAGAACTTTCCTTTATTAGATTTCCATTTGGAGGGTTGAACTAAAGACGTTGTTAATCTTTCTTAAACATCCCAAATTTTTGCTCATGGGTTTCCTCCTTGGGGCCATTGTGCAGTTTATTACATATTCTTTATGGGTTCACAATTTGAGGACAGAAGAGAAGTTATTTCCTTTGTGATATTTTTCTTATTTTATGGGAACTTGGGAAGTTCGATTGAAGATAAATAGATCAGGTTTCGTACAGTTATTGTAATCATACAAATAAAGGAAAGAACCATCTGCTTTACATAGATTCATCTGATGCAATGGACTAAAAACATAATTTTTCTCTATATGCATGTATGTTTAGATGCTTTGGTGTATGGTGTGTTGTTTTTCTCTCTTCTCAGTGTACTTCCGTTTGTGGCAGACTGTTGAAGAAACTTTACACACGCTAAGAGGCATTGACTCATGTGAGCATGCCCATTCTCCAATGGTTAATTTAGATGAGTCCCCTGAGGACCTCTGGAGATCTGTTTGGTTACAGCAAATATGCCAGTCATCAGGTGTCATTGGAGGAAATGTACTAATGTGTGTCCAGGATGGCCTTGCTTCTCATTCAGGAACTAATGACCGCTCAAGATTTAAGGTTAGCTCCAAAAATGTTTTCAAGTAGATCTTGTGATGTGATTTTCTTTTCTTTTGGTTCAGTTTTTAAATCACTCTTGGTCACCTCCTGTAATTGTTGTGCAGAAATTTGATGCTCAAGATGCAAACAGCAATAATGACCATGCACATACTTTATCAGTGTCTAGCATAGTTCAGATGGCATCTCATAGAGAAAATGGTGATATATCAAATGGATCATTAGAAAATTCAAACAGATGTACTGTTAACGAGAGTTGCCGGCGAGCTTTCCGTAGTATTATCGATTCACAGAAGTTCGTCTCATTGTGTAAGCTTCTATCTGAAAATTTCCGCGGAATCAAGGCTGATAATGTTTTTGACTTTAGTCTTGTAAACTCGAGGATCAAAGAAGGGGCTTATGAAAATTCATCTACGCTCTTCCTCTCTGACATACAACAGGCATGTTTGATTATCTTGCTTCACTTTTTATTATTACTTTATTTTACATTTTTGGTGAATTTCTTGTGGAACTTTTTATCAATCACAATTGCTTATAAAATGAATAAATATTATTTTCTAATGCGAATCAACTTAATGTTTTTCTTCTCTCATCTTCCCATTTTTTCATGTGTAATGCCTGCTTTTTTTCCCTATTCCTGTCAGTCCCTAATATCTACTTCAGCAGACAATCAAGCATACTGTTTCCTTCTTCCTGTATTTTATTTGTTCATATTGAAAAAGCTTGCGTAAAGTTTCTTTTTGGAGATGATGGTGGTGCTATGGGGTGTCACATGGTTGAGATGTCTGGATGCACCTCTTGATCTATAGCTTTATGCTTGTTGTTTTCAATTGTACTTTGAGCATTAGTTTCATTTCATTATCTTAATGAAGAGGCTTATATAAAATTGTTTGTTTTCCTTATTGCACTTTTCTTTCTTCAGTATTCTCTTAGATTGTGTCTGGATTGTTTGTTCCAAATATGCTATTCCCATTTCCCAATTTCTAAACTTACGGATGTTTGTATAGTATTTGTTGGTGTTGGAATTGTATTTTCAACTATAGCTGTACTCCATTACTTGTCTTGATTTGGCATTATATAACGGTTAATGTTTAATTTTCTGTAGATATGGAGAAAGTTTCAAGCAATTGGCACTGAACTGGTATCACTGGCAGAAAGCCTCTCAGACTTTTCCAGAACTACCTATCGAGAAAAGGTGAAAACAAGTTTCTTCAGCTGTTAATATAATGCTATATGGATTGTAGACTATGTTTTAATCATCTCTATCCTATTTTCTTCCAAGAAATGCTGAGTGGTCTGGTCTGCAATCTATTGTGTTTCTATTAGTTTTCAACCCTTTCATCTTGGATTTTCTTATTGCTTTGAACCTTGCAGGTGGGAGTTTCAGGGCGCAACGTATTTGAAGATGGAAAGCACGAGG

Coding sequence (CDS)

ATGGTTATTGAAGATGGGAAAAGCAATGGCGATGGCTTTCGAACTTACAAGAGGCGGAAGCAGACTAGGTTGACTTCTGGGAGTGAATGCGATGAAGATATAAAGACTCACGTTGAAGCTGCTGGTCAACTTGTGACTGTTGAAGAAACTTTACACACGCTAAGAGGCATTGACTCATGTGAGCATGCCCATTCTCCAATGGTTAATTTAGATGAGTCCCCTGAGGACCTCTGGAGATCTGTTTGGTTACAGCAAATATGCCAGTCATCAGGTGTCATTGGAGGAAATGTACTAATGTGTGTCCAGGATGGCCTTGCTTCTCATTCAGGAACTAATGACCGCTCAAGATTTAAGAAATTTGATGCTCAAGATGCAAACAGCAATAATGACCATGCACATACTTTATCAGTGTCTAGCATAGTTCAGATGGCATCTCATAGAGAAAATGGTGATATATCAAATGGATCATTAGAAAATTCAAACAGATGTACTGTTAACGAGAGTTGCCGGCGAGCTTTCCGTAGTATTATCGATTCACAGAAGTTCGTCTCATTGTGTAAGCTTCTATCTGAAAATTTCCGCGGAATCAAGGCTGATAATGTTTTTGACTTTAGTCTTGTAAACTCGAGGATCAAAGAAGGGGCTTATGAAAATTCATCTACGCTCTTCCTCTCTGACATACAACAGATATGGAGAAAGTTTCAAGCAATTGGCACTGAACTGGTATCACTGGCAGAAAGCCTCTCAGACTTTTCCAGAACTACCTATCGAGAAAAGGTGGGAGTTTCAGGGCGCAACGTATTTGAAGATGGAAAGCACGAG

Protein sequence

MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDEDIKTHVEAAGQLVTVEETLHTLRGIDSCEHAHSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNVLMCVQDGLASHSGTNDRSRFKKFDAQDANSNNDHAHTLSVSSIVQMASHRENGDISNGSLENSNRCTVNESCRRAFRSIIDSQKFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIGTELVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE

Homology

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BLAST of Cucsat.G20639 vs. ExPASy Swiss-Prot
Match: Q6ZJM9 (PHD finger protein EHD3 OS=Oryza sativa subsp. japonica OX=39947 GN=EHD3 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-11
Identity = 58/205 (28.29%), Postives = 98/205 (47.80%), Query Frame = 0


Query: 78  WRSVWLQQICQSSGVI-GGNVLMCVQDGLASHSG--TNDRSRFKKFDAQDANSNNDHAHT 137
           WR   L    QS  +  GG +  C++  L  +    TN      +F    A+S  + A  
Sbjct: 57  WRDT-LHGFLQSPAISQGGGIQTCIRHALQHNPCLLTNGVVVHTEFKGNPAHSQGEEAK- 116

Query: 138 LSVSSIVQMASHRENGDI--SNGSLENSNRCTVNES----CRRAFRSIIDSQKFVSLCKL 197
                 VQ  +    G +  ++ +++++     +E+    C  A   I+ SQKF  LC L
Sbjct: 117 ------VQHPNGAAGGKVVSADAAIQDAAAAASSEANKAMCNNALFDILVSQKFALLCHL 176

Query: 198 LSENFRGIKADNVFDFSLVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIGTELVSLAESL 257
           L   F   K  +V D   ++++++ G Y ++  LF  DIQQ+W KF+ +G E+  LA +L
Sbjct: 177 LLGTFHVNKPGDVIDLEKIDAKMRNGDYAHNPALFDDDIQQMWEKFEQVGQEMTGLASNL 236

Query: 258 SDFSRTTYREKVGVSGRNVFEDGKH 274
           S  SR +Y+++   SG +  E  +H
Sbjct: 237 STISRVSYQKQ--ASGFSEAEVAEH 251

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BLAST of Cucsat.G20639 vs. NCBI nr
Match: XP_004139798.1 (PHD finger protein EHD3 isoform X1 [Cucumis sativus] >XP_011658995.1 PHD finger protein EHD3 isoform X1 [Cucumis sativus] >XP_031744612.1 PHD finger protein EHD3 isoform X1 [Cucumis sativus] >XP_031744613.1 PHD finger protein EHD3 isoform X1 [Cucumis sativus] >KAE8646065.1 hypothetical protein Csa_016584 [Cucumis sativus])

HSP 1 Score: 546 bits (1406), Expect = 3.95e-191
Identity = 273/274 (99.64%), Postives = 274/274 (100.00%), Query Frame = 0


Query: 1   MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDEDIKTHVEAAGQLVTVEETLHTLRGIDSC 60
           MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDEDIKTHVEAAGQLVTVEETLHTLRGIDSC
Sbjct: 1   MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDEDIKTHVEAAGQLVTVEETLHTLRGIDSC 60

Query: 61  EHAHSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNVLMCVQDGLASHSGTNDRSRFKKF 120
           EHAHSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNVLMCVQDGLASHSGTNDRSRFKKF
Sbjct: 61  EHAHSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNVLMCVQDGLASHSGTNDRSRFKKF 120

Query: 121 DAQDANSNNDHAHTLSVSSIVQMASHRENGDISNGSLENSNRCTVNESCRRAFRSIIDSQ 180
           DAQDANSNNDHAHT+SVSSIVQMASHRENGDISNGSLENSNRCTVNESCRRAFRSIIDSQ
Sbjct: 121 DAQDANSNNDHAHTVSVSSIVQMASHRENGDISNGSLENSNRCTVNESCRRAFRSIIDSQ 180

Query: 181 KFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIGTE 240
           KFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIGTE
Sbjct: 181 KFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIGTE 240

Query: 241 LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE 274
           LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE
Sbjct: 241 LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE 274

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BLAST of Cucsat.G20639 vs. NCBI nr
Match: TYK23258.1 (remodeling and spacing factor 1 [Cucumis melo var. makuwa])

HSP 1 Score: 519 bits (1336), Expect = 1.67e-180
Identity = 261/274 (95.26%), Postives = 264/274 (96.35%), Query Frame = 0


Query: 1   MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDEDIKTHVEAAGQLVTVEETLHTLRGIDSC 60
           MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDED KTHVEAAGQLV VEETLHTLRGI SC
Sbjct: 1   MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDEDRKTHVEAAGQLVAVEETLHTLRGIGSC 60

Query: 61  EHAHSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNVLMCVQDGLASHSGTNDRSRFKKF 120
           EH HSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNV  CVQDGLASHSGTNDRSRF+KF
Sbjct: 61  EHVHSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNVPTCVQDGLASHSGTNDRSRFRKF 120

Query: 121 DAQDANSNNDHAHTLSVSSIVQMASHRENGDISNGSLENSNRCTVNESCRRAFRSIIDSQ 180
           DAQDANSNND AHT SVSS VQMASHRENGD+SNGSLENSNRC+VNESCRRAFRSIIDSQ
Sbjct: 121 DAQDANSNNDLAHTGSVSSTVQMASHRENGDVSNGSLENSNRCSVNESCRRAFRSIIDSQ 180

Query: 181 KFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIGTE 240
           KFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSS LFLSDIQQIWRKFQAIGTE
Sbjct: 181 KFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSSALFLSDIQQIWRKFQAIGTE 240

Query: 241 LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE 274
           LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE
Sbjct: 241 LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE 274

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BLAST of Cucsat.G20639 vs. NCBI nr
Match: XP_016900482.1 (PREDICTED: remodeling and spacing factor 1 [Cucumis melo])

HSP 1 Score: 514 bits (1323), Expect = 1.68e-178
Identity = 261/276 (94.57%), Postives = 264/276 (95.65%), Query Frame = 0


Query: 1   MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDEDIKTHVEAAGQLVT--VEETLHTLRGID 60
           MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDED KTHVEAAGQLV   VEETLHTLRGI 
Sbjct: 1   MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDEDRKTHVEAAGQLVVRAVEETLHTLRGIG 60

Query: 61  SCEHAHSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNVLMCVQDGLASHSGTNDRSRFK 120
           SCEH HSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNV  CVQDGLASHSGTNDRSRF+
Sbjct: 61  SCEHVHSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNVPTCVQDGLASHSGTNDRSRFR 120

Query: 121 KFDAQDANSNNDHAHTLSVSSIVQMASHRENGDISNGSLENSNRCTVNESCRRAFRSIID 180
           KFDAQDANSNND AHT SVSS VQMASHRENGD+SNGSLENSNRC+VNESCRRAFRSIID
Sbjct: 121 KFDAQDANSNNDLAHTGSVSSTVQMASHRENGDVSNGSLENSNRCSVNESCRRAFRSIID 180

Query: 181 SQKFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIG 240
           SQKFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSS LFLSDIQQIWRKFQAIG
Sbjct: 181 SQKFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSSALFLSDIQQIWRKFQAIG 240

Query: 241 TELVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE 274
           TELVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE
Sbjct: 241 TELVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE 276

[Close]

BLAST of Cucsat.G20639 vs. NCBI nr
Match: XP_031744614.1 (PHD finger protein EHD3 isoform X2 [Cucumis sativus])

HSP 1 Score: 483 bits (1244), Expect = 6.85e-167
Identity = 248/274 (90.51%), Postives = 250/274 (91.24%), Query Frame = 0


Query: 1   MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDEDIKTHVEAAGQLVTVEETLHTLRGIDSC 60
           MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDEDIKTHVEAAGQLVTVEETLHTLRGIDSC
Sbjct: 1   MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDEDIKTHVEAAGQLVTVEETLHTLRGIDSC 60

Query: 61  EHAHSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNVLMCVQDGLASHSGTNDRSRFKKF 120
           EHAHSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNVLMCVQDGLASHSGTNDRSRFKKF
Sbjct: 61  EHAHSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNVLMCVQDGLASHSGTNDRSRFKKF 120

Query: 121 DAQDANSNNDHAHTLSVSSIVQMASHRENGDISNGSLENSNRCTVNESCRRAFRSIIDSQ 180
           DAQDANSNNDHAHT+SVSSIVQMASHRENGDISNGSLENSNRCTVNESCRRAFRSIIDSQ
Sbjct: 121 DAQDANSNNDHAHTVSVSSIVQMASHRENGDISNGSLENSNRCTVNESCRRAFRSIIDSQ 180

Query: 181 KFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIGTE 240
                                   +LVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIGTE
Sbjct: 181 ------------------------NLVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIGTE 240

Query: 241 LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE 274
           LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE
Sbjct: 241 LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE 250

[Close]

BLAST of Cucsat.G20639 vs. NCBI nr
Match: XP_038897858.1 (PHD finger protein EHD3 [Benincasa hispida])

HSP 1 Score: 479 bits (1233), Expect = 2.46e-164
Identity = 251/311 (80.71%), Postives = 259/311 (83.28%), Query Frame = 0


Query: 1   MVIEDGKSNGD-------------------------------------GFRTYKRRKQTR 60
           MVIEDG SNGD                                     GFRTYKRRKQ R
Sbjct: 1   MVIEDGNSNGDCTGCALEVKFVKREAVENGIGKGVLNVVTTGVPGTSDGFRTYKRRKQIR 60

Query: 61  LTSGSECDEDIKTHVEAAGQLVTVEETLHTLRGIDSCEHAHSPMVNLDESPEDLWRSVWL 120
           LTSGSEC  D KTHVEAAGQLVTVEETL TLRGI+SCEH HSPMVNLDESPEDLWRSVWL
Sbjct: 61  LTSGSECKGDSKTHVEAAGQLVTVEETLQTLRGINSCEHVHSPMVNLDESPEDLWRSVWL 120

Query: 121 QQICQSSGVIGGNVLMCVQDGLASHSGTNDRSRFKKFDAQDANSNNDHAHTLSVSSIVQM 180
           QQICQSSGV GGNV MCVQDGLASHSGTNDRSRF+KFDAQ ANSNND A T SVSS V++
Sbjct: 121 QQICQSSGVTGGNVPMCVQDGLASHSGTNDRSRFRKFDAQGANSNNDLARTGSVSSTVRL 180

Query: 181 ASHRENGDISNGSLENSNRCTVNESCRRAFRSIIDSQKFVSLCKLLSENFRGIKADNVFD 240
           ASHRENGD SNGSLENSN+C+VNESCRRAFRSIIDSQKFVSLCKLLSENFRGIKADNVFD
Sbjct: 181 ASHRENGDASNGSLENSNKCSVNESCRRAFRSIIDSQKFVSLCKLLSENFRGIKADNVFD 240

Query: 241 FSLVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIGTELVSLAESLSDFSRTTYREKVGVS 274
           FSLVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIGTELVSLAESLSDFSRTTY+EKVGVS
Sbjct: 241 FSLVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIGTELVSLAESLSDFSRTTYQEKVGVS 300

[Close]

BLAST of Cucsat.G20639 vs. ExPASy TrEMBL
Match: A0A5D3DIH3 (Remodeling and spacing factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003110 PE=4 SV=1)

HSP 1 Score: 519 bits (1336), Expect = 8.09e-181
Identity = 261/274 (95.26%), Postives = 264/274 (96.35%), Query Frame = 0


Query: 1   MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDEDIKTHVEAAGQLVTVEETLHTLRGIDSC 60
           MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDED KTHVEAAGQLV VEETLHTLRGI SC
Sbjct: 1   MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDEDRKTHVEAAGQLVAVEETLHTLRGIGSC 60

Query: 61  EHAHSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNVLMCVQDGLASHSGTNDRSRFKKF 120
           EH HSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNV  CVQDGLASHSGTNDRSRF+KF
Sbjct: 61  EHVHSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNVPTCVQDGLASHSGTNDRSRFRKF 120

Query: 121 DAQDANSNNDHAHTLSVSSIVQMASHRENGDISNGSLENSNRCTVNESCRRAFRSIIDSQ 180
           DAQDANSNND AHT SVSS VQMASHRENGD+SNGSLENSNRC+VNESCRRAFRSIIDSQ
Sbjct: 121 DAQDANSNNDLAHTGSVSSTVQMASHRENGDVSNGSLENSNRCSVNESCRRAFRSIIDSQ 180

Query: 181 KFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIGTE 240
           KFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSS LFLSDIQQIWRKFQAIGTE
Sbjct: 181 KFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSSALFLSDIQQIWRKFQAIGTE 240

Query: 241 LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE 274
           LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE
Sbjct: 241 LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE 274

[Close]

BLAST of Cucsat.G20639 vs. ExPASy TrEMBL
Match: A0A1S4DWX3 (remodeling and spacing factor 1 OS=Cucumis melo OX=3656 GN=LOC103490198 PE=4 SV=1)

HSP 1 Score: 514 bits (1323), Expect = 8.12e-179
Identity = 261/276 (94.57%), Postives = 264/276 (95.65%), Query Frame = 0


Query: 1   MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDEDIKTHVEAAGQLVT--VEETLHTLRGID 60
           MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDED KTHVEAAGQLV   VEETLHTLRGI 
Sbjct: 1   MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDEDRKTHVEAAGQLVVRAVEETLHTLRGIG 60

Query: 61  SCEHAHSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNVLMCVQDGLASHSGTNDRSRFK 120
           SCEH HSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNV  CVQDGLASHSGTNDRSRF+
Sbjct: 61  SCEHVHSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNVPTCVQDGLASHSGTNDRSRFR 120

Query: 121 KFDAQDANSNNDHAHTLSVSSIVQMASHRENGDISNGSLENSNRCTVNESCRRAFRSIID 180
           KFDAQDANSNND AHT SVSS VQMASHRENGD+SNGSLENSNRC+VNESCRRAFRSIID
Sbjct: 121 KFDAQDANSNNDLAHTGSVSSTVQMASHRENGDVSNGSLENSNRCSVNESCRRAFRSIID 180

Query: 181 SQKFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIG 240
           SQKFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSS LFLSDIQQIWRKFQAIG
Sbjct: 181 SQKFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSSALFLSDIQQIWRKFQAIG 240

Query: 241 TELVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE 274
           TELVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE
Sbjct: 241 TELVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE 276

[Close]

BLAST of Cucsat.G20639 vs. ExPASy TrEMBL
Match: A0A0A0K794 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G219230 PE=4 SV=1)

HSP 1 Score: 483 bits (1244), Expect = 4.96e-171
Identity = 248/274 (90.51%), Postives = 250/274 (91.24%), Query Frame = 0


Query: 1   MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDEDIKTHVEAAGQLVTVEETLHTLRGIDSC 60
           MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDEDIKTHVEAAGQLVTVEETLHTLRGIDSC
Sbjct: 1   MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDEDIKTHVEAAGQLVTVEETLHTLRGIDSC 60

Query: 61  EHAHSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNVLMCVQDGLASHSGTNDRSRFKKF 120
           EHAHSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNVLMCVQDGLASHSGTNDRSRFKKF
Sbjct: 61  EHAHSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNVLMCVQDGLASHSGTNDRSRFKKF 120

Query: 121 DAQDANSNNDHAHTLSVSSIVQMASHRENGDISNGSLENSNRCTVNESCRRAFRSIIDSQ 180
           DAQDANSNNDHAHT+SVSSIVQMASHRENGDISNGSLENSNRCTVNESCRRAFRSIIDSQ
Sbjct: 121 DAQDANSNNDHAHTVSVSSIVQMASHRENGDISNGSLENSNRCTVNESCRRAFRSIIDSQ 180

Query: 181 KFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIGTE 240
                                   +LVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIGTE
Sbjct: 181 ------------------------NLVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIGTE 240

Query: 241 LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE 274
           LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE
Sbjct: 241 LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE 250

[Close]

BLAST of Cucsat.G20639 vs. ExPASy TrEMBL
Match: A0A6J1IEM0 (PHD finger protein EHD3-like OS=Cucurbita maxima OX=3661 GN=LOC111475137 PE=4 SV=1)

HSP 1 Score: 435 bits (1119), Expect = 1.99e-147
Identity = 221/274 (80.66%), Postives = 239/274 (87.23%), Query Frame = 0


Query: 1   MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDEDIKTHVEAAGQLVTVEETLHTLRGIDSC 60
           +V E      DGFRTYKRRKQT+LT GSEC  + KTHVEA+GQ VTVEETLH LRG +SC
Sbjct: 38  VVTEGVPGTSDGFRTYKRRKQTKLTCGSECKGNGKTHVEASGQFVTVEETLHLLRGSNSC 97

Query: 61  EHAHSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNVLMCVQDGLASHSGTNDRSRFKKF 120
           +H H PMVNLDESP+DLWRSV ++Q+C  S V G NV MCV DGLA++SG ND SRF+KF
Sbjct: 98  DHVHPPMVNLDESPDDLWRSVLVKQMCHLSSVNGDNVPMCVHDGLATNSGANDPSRFRKF 157

Query: 121 DAQDANSNNDHAHTLSVSSIVQMASHRENGDISNGSLENSNRCTVNESCRRAFRSIIDSQ 180
           DAQDANSNND A T SVSS VQMASHRENG +SNGSLEN +RC+VNESC RAF SIIDSQ
Sbjct: 158 DAQDANSNNDLARTGSVSSTVQMASHRENGVVSNGSLENPDRCSVNESCWRAFLSIIDSQ 217

Query: 181 KFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIGTE 240
           KF+SLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENS TLFLSD+QQIWRKFQAIGTE
Sbjct: 218 KFISLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSPTLFLSDVQQIWRKFQAIGTE 277

Query: 241 LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE 274
           LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE
Sbjct: 278 LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE 311

[Close]

BLAST of Cucsat.G20639 vs. ExPASy TrEMBL
Match: A0A6J1F863 (PHD finger protein EHD3-like OS=Cucurbita moschata OX=3662 GN=LOC111442986 PE=4 SV=1)

HSP 1 Score: 433 bits (1114), Expect = 1.13e-146
Identity = 220/274 (80.29%), Postives = 238/274 (86.86%), Query Frame = 0


Query: 1   MVIEDGKSNGDGFRTYKRRKQTRLTSGSECDEDIKTHVEAAGQLVTVEETLHTLRGIDSC 60
           +V E      DGFRTYKRRKQT+LT GSEC  + KTHVEA+GQ VTVEETLH LRG +SC
Sbjct: 38  VVTEGVPGTSDGFRTYKRRKQTKLTCGSECKGNGKTHVEASGQFVTVEETLHLLRGSNSC 97

Query: 61  EHAHSPMVNLDESPEDLWRSVWLQQICQSSGVIGGNVLMCVQDGLASHSGTNDRSRFKKF 120
           +H H PMVNLDESP+DLWRSV+ +Q+C  S V G NV MCV DGLA++SG ND  RF+KF
Sbjct: 98  DHVHPPMVNLDESPDDLWRSVFSKQMCHLSSVNGDNVPMCVNDGLATNSGANDPPRFRKF 157

Query: 121 DAQDANSNNDHAHTLSVSSIVQMASHRENGDISNGSLENSNRCTVNESCRRAFRSIIDSQ 180
           DAQDANSNND A T SVSS VQMASHRENG +SNGSLEN +RC+VNESC RAF SIIDSQ
Sbjct: 158 DAQDANSNNDLARTGSVSSTVQMASHRENGVVSNGSLENPDRCSVNESCWRAFLSIIDSQ 217

Query: 181 KFVSLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSSTLFLSDIQQIWRKFQAIGTE 240
           KF+SLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENS TLFLSD+QQIWRKFQAIGTE
Sbjct: 218 KFISLCKLLSENFRGIKADNVFDFSLVNSRIKEGAYENSPTLFLSDVQQIWRKFQAIGTE 277

Query: 241 LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE 274
           LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE
Sbjct: 278 LVSLAESLSDFSRTTYREKVGVSGRNVFEDGKHE 311

The following BLAST results are available for this feature:

BLAST of Cucsat.G20639 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6ZJM9	1.2e-11	28.29	PHD finger protein EHD3 OS=Oryza sativa subsp. japonica OX=39947 GN=EHD3 PE=1 SV...	[more]

BLAST of Cucsat.G20639 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139798.1	3.95e-191	99.64	PHD finger protein EHD3 isoform X1 [Cucumis sativus] >XP_011658995.1 PHD finger ...	[more]
TYK23258.1	1.67e-180	95.26	remodeling and spacing factor 1 [Cucumis melo var. makuwa]	[more]
XP_016900482.1	1.68e-178	94.57	PREDICTED: remodeling and spacing factor 1 [Cucumis melo]	[more]
XP_031744614.1	6.85e-167	90.51	PHD finger protein EHD3 isoform X2 [Cucumis sativus]	[more]
XP_038897858.1	2.46e-164	80.71	PHD finger protein EHD3 [Benincasa hispida]	[more]

BLAST of Cucsat.G20639 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DIH3	8.09e-181	95.26	Remodeling and spacing factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S4DWX3	8.12e-179	94.57	remodeling and spacing factor 1 OS=Cucumis melo OX=3656 GN=LOC103490198 PE=4 SV=...	[more]
A0A0A0K794	4.96e-171	90.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G219230 PE=4 SV=1	[more]
A0A6J1IEM0	1.99e-147	80.66	PHD finger protein EHD3-like OS=Cucurbita maxima OX=3661 GN=LOC111475137 PE=4 SV...	[more]
A0A6J1F863	1.13e-146	80.29	PHD finger protein EHD3-like OS=Cucurbita moschata OX=3662 GN=LOC111442986 PE=4 ...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G20639.T2	Cucsat.G20639.T2	mRNA
Cucsat.G20639.T1	Cucsat.G20639.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding