Cucsat.G17340 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G17340
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	rho GTPase-activating protein 1
Location	ctg27: 263786 .. 266299 (-)
RNA-Seq Expression	Cucsat.G17340
Synteny	Cucsat.G17340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCATTCCAAGGACAGTTTGAAAACAGGAGATATGGTCGACCCATTAAATATTTGATGCCTATGATGCATTAACTTTCTTTAAATCTAACTTACACCTTTCCATTAACAAAAAAAATTGTCTTTTTTCATACATAGATCATAACATTTTATCCAGAACTTCTTAAAAAATGACAGAGAAAACATAGAAGGAATTAAAAAAAAAAAAATTGAATTTAGAGTTCTTGCTTATCTGTTAAAGGGTTGGCAAGTTTCTATTTTTGTGGGTTTAATGAAGGTTAAGAATGGAGATTATGCCATTGAAGCGCGTTTGTTCTTGTTGGGGTGAGTGAAAATGGGGAGCCATGGAGGCAAAAGGCCTAAAGTTATTTAAAGAAAGGGAAAGGAAGAAGAAAAAAGGGAGGCGTTTGGTTGAAGCTCCCAAGATTAAAATTTAGCAATAATTACTATATTTATTTGTGTTCTGTTTTGTGAATCTTTGCCTTGAAATTTCTTTACTCTCCTCATCCTTTTCTTCTTCTTTAATCTTCAAACTCCCTCACAATCCACTAAAAAAGGATCAGACATTGTGGAAAAGAAAAGAGAAAGAGAGGAGGATTCTGTTAAATGATTCTCAAATCTTGTTCCTTGTTCCTTCTTCCCTGTTACCGTTTTTTTCTCTCTTTACCCAAATCATTCTTTGTTTCTGTTTTCTGAAAATCGTTTTTGGGGTTTTCTTTTATATTCCCAAGAAAGAAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAGAGGACCCTCTTTCTTATTGTTCTTCTTCTTCTTTCATTGGCAGCCATGACTGAGGTTGTTCTTCATTCCCCTTCTCATTTTGCTTCATCCCGCAGAAGGGTTTCTTCTTCTTCTTCGTCTTCCACGGTTACTGTTACATGTCCAACGCCTCCCAATGATGGATCTCTCCTTGTCAACATGCATTCTCAAACACCCATTTCCCCTTCTTCTTCTTCTTCTTCTGTAGATGGGGATGGGGATGTTACCGAGATTGAATGTGAAGTGGAGGAGGTGGTGGGGAAGGACCGGTTTAAGCAAAGAAGAGATCAGCTCTCATTGTTGGCTTTAGTTGTAACCCTTTTCAGGAAATCTTTAATTGCTTGCAAGAGTGATAGAAGAGAGCTATGCGCAATGGAGATCGGTTGGCCGACCAATGTACGCCATGTCACCCATGTTACTTTTGATAGGTTTAATGGATTCTTGGGCTTGCCTGTTGAGTTTGAACCAGAAGTGCCTCGCAGGGCTCCAAGTGCTAGGTACATTCCTTTTTTTTCCGACTGCTTACAGAATTTGGTCGTGAGTATTGATTGTTTGGCCTTATGCTTCTTTCTTTATACACTGATTCTTTATGTCTTTTTGTTGGTTTTGGTTGTGTGATTCTTGAAGTTAAGTAGCTAATGTCTTAATTATACTTCTATTTTTTGCAATTCTGAAGTTTGGGAAGTCGTTCTAGTTGGTTGAGGTTCAACCCTCCAAAGCTTTTGTTGCTGTCTATTTATCCATCTGAATAGCTATCTCTTTCGTCTGTTGTGACTATCTGGTGCCTTCTTTCTAAATTTCCTTTGAGATTAAGGATTTGTTGAGGAATGTTTCTGTTCCTGGATTTGAGGCATCATGAACATGGACACTCGTCACGTTTCTCCTTAATTTATTATATATCTAATTTATGTGTCTTGAAGTAAGAAAGAAGAATCGATGAGTTCTGTAGCTTCAGTTTCTACCAGAAATGGAAATGAAAGAGAAGAGAAGTATGGACTTTGATTTTCCAATGAAATGTAACCTATAAACTCATATCAAATTTAGGAAAATTTATTGCCACATGGTGTCTCTCCCCTTCCCCAAACCCTCTTTGGTCCCTGGATCTTTTGCATCCTTATGGTATAAAAGTGCCAACCACATCATTCTAGGCTCATCAAATTGTTTCTCCAAATGTAGAGCCCTTTTCTATTTTGGTCTTCTGCATCACACCTTATGTGATTCCATAATCTTGCTGCATATTGGTGCTGTTCCCTTGCCTTGATACTTGATTTCTATATAGTGTTTTTTTGTTGCTTGCCTATTTTAGGACTTATTTCCTTGAAATTACATTTGTAGTACCACGGTGTTTGGGGTTTCAACTGAATCCATGCAATTGTCATATGACTCGAGAGGGAATAGCGTGCCAACAATTCTTATACTAATGCAACACTGTCTGTATGCTCAAGGTGGCTTGCAGGTACATTCACTTTATTTTCATTTATGCGTAACTCCTTAATTGTAAATCCAAAATTCTGGTTCATTAATGCCACAAAGGCCTAGTGAAAAAAAAGAACAAGAAATGATCTTCCGATTTTTGTCGTGATGGTGAAGATAAGATAGATTTTCAGATCTAATGCCGAAGGTAGTTTCCGGTGTTCTTTAAGTTTTACACTGTGGATGCATTGTTAATTGGTCCAGCCTAGTGTTTGCTTCTGATTTGTCTTTTCATCCCTTCAGGCTGAAGGCATTTTCAGAATTAATGCAGAAAACAGTCAAGAGGAGTATGTACGTGATCAGTTAAATCAAGGAGTGGTACCTGACGACATTGATGTACATTGTTTAGCTGGCCTTATCAAGGTTATCTCAATTTAATTAAAACTCAAAGATAAATCTATAGGTATTGAATTTGAATAATACTGTTGATTGGTCTGTGAAAATTTGCTATAATCATAGAAATAAATGCTTATAAAATGAGAAATTTGTATGGGATCTGGTTCTTGTTAATAATTAAATGTATTGTCACAAAGAACATGGACAAATATCCATTGGATATGATGGTCCAGGGTTTATACCCCTGTAAATTACTTGCTCAAACACCTATTCAAAGCACATAATATATTTAGTTGGTTCCCGGTTCTCTTCTAAATTTTTTGCAAGATTTGGTTAAGTCATCTTACTTGATAGATGCTGAAAATGTCATCATTGTGGAATGTTATTTTTGCTTTCCTCCGATTGAGTGTGTGGTTCATTTTTGCCTATAGGTTGTCTGTTTTCATCTCTTATGGAATATTCCTTTCCTCTGTTTCTTCAATATGCATACTGTACGGTTTTTGTTTAGTAGGATCGTCTGATGGTCGTGAGTTTTCTTTTCCCCCTTATATGTTACCCAAGGGATCTCTTTTCACAAATCATAGATCATTTAGTCTTACTCAACAGTAACCTTGTAACTCATATCCAGTGAAATACATTAAGTTTAGAAAGTGAATCATATTCTACACAAACATGAACGAATTTCCTAATAATATGGCATCATAATTGGTTTAGAGTTGGATTAATAGAAGAAATAATAATATGACTAGAGACTAAACTGTTGTGCTGGCTATAGATGTTGTTTGTTTCTTTTACAAGTAATTTTGATTTCCATGTGTTCAATTTTTACTTATTAAAAATTAACAGGCTTGGTTCAGAGAACTCCCAGCTGGGATTTTGGATTCTCTGTCGCCCGAGGAGGTCATGGAGTGCCAGACAGAAGAAGAATGTGCTGACCTAATAAGGCATCTACCTCCTAGTGAAGCTTCTCTGCTGGATTGGGCAATCAACCTAATGGCAGATGTTGTCACGCAGGAACATTTCAACAAAATGAATGCTCGCAACATCGCTATGGTTTTTGCACCAAACATGACTCAGGTGAAATTCAAATAGCTTATGTTAGTTAAGTCCACTTTCTGGAGACGAGAAATGTTTCTAACTTCTGAGTCTACGTGAAACACATTGAAGATTTGGTATCTTAACTTTTAGTTCCTTTTCTGATTTGCAAGATTTTTCTTTAATCCTTTTTGGAAGCCTGTGTTTACCTGTCCAAAACTGACTCTGCAATGCGTTCTAAAGTTCCGATTCTGACAAACACAAGAATACATAAGTTTGCTTTTCCCAATTGTCGAGTTCCTGTTGATGATCATTGGTTGTGCTTGATCCATCTGACAATGGTTTTCTGGCATTCTTTTCATGCAGATGGCCGACCCTTTGACGGCATTGATGTATGCTGTTCAAGTTATGAACTTTCTCAGGATGCTGATCTTAAGGACACTCCGAGGAAGGGAAGACTCCATTCTCGACTCTGCTGCTACACATTTAGAGCCGCCTGATGAGAGTGGCCACCAGAGTCCTTCACAGCCCTGCCTTGGAAATACCGTCACTGTATTTCAGGTGGCAGAGCAAACCGTGCCTGAGTTTTTTGCAGAACCGCCTGTTCTAGAAACATATTCCGACTGTAACAAAGGTGCACGTTTTTCTGATGGAGATGTTTTTTCTTTAAGCCATGTCAAGAAACTGTTACCTAATCGATATAGATCTTTACGGAATGCCCACGAAGACAAAGAAGCTGTTACAGGCAATGACATGAAGGCAGAAGTTGTAATCCAAACTGATCTATCAAATGTTCCAAATCTGAAAAAAGAAACTAACAAACTAAATAACCAGAACTCTGTATTCCAAGTCTTGGCACCGGTACCGGTAGAGAAGCGGCTCAGCAACTTTAGTTGTATAAATTCATGGACAGAGCGAATCGAAGCTTGGCGATAAATAGGTAAAACTGTTAACGAAACTTGCTGTGCTATAAAAGATGACACTTTTAAGAAGTTTGTTGAATATGCTGACCTGACCACATATGAGGTTGCTAATTTTTACGCATGTTTGGCTTAACTTGGGGGTTTTGGAACTGAGCTTCTTCATTATGATATGTGGTTTCATGTATTTTTTTTTCTTTCTTATTTTTCTTTTTTCTGAGTAATGTGGGCACAAGAATTGCCTCCTCAGTTATATGTAATAAGTAAATAATCAATTCTAGGCATCTGAATATATAGCAGGTGATAAAGTTTCATGTTATTATAGATTAGAGGAATGGTGAGGGGAGATGCAAATGAAGTTATTTGGTGCCATATTAAGTAGAAGCTCCCAACACTTCATATCCGACCAAAGTGGTTCAAATTCTTATTTTTTCATATGTTGATTCCTCAATTATTT

Coding sequence (CDS)

ATGACTGAGGTTGTTCTTCATTCCCCTTCTCATTTTGCTTCATCCCGCAGAAGGGTTTCTTCTTCTTCTTCGTCTTCCACGGTTACTGTTACATGTCCAACGCCTCCCAATGATGGATCTCTCCTTGTCAACATGCATTCTCAAACACCCATTTCCCCTTCTTCTTCTTCTTCTTCTGTAGATGGGGATGGGGATGTTACCGAGATTGAATGTGAAGTGGAGGAGGTGGTGGGGAAGGACCGGTTTAAGCAAAGAAGAGATCAGCTCTCATTGTTGGCTTTAGTTGTAACCCTTTTCAGGAAATCTTTAATTGCTTGCAAGAGTGATAGAAGAGAGCTATGCGCAATGGAGATCGGTTGGCCGACCAATGTACGCCATGTCACCCATGTTACTTTTGATAGGTTTAATGGATTCTTGGGCTTGCCTGTTGAGTTTGAACCAGAAGTGCCTCGCAGGGCTCCAAGTGCTAGTACCACGGTGTTTGGGGTTTCAACTGAATCCATGCAATTGTCATATGACTCGAGAGGGAATAGCGTGCCAACAATTCTTATACTAATGCAACACTGTCTGTATGCTCAAGGTGGCTTGCAGGCTGAAGGCATTTTCAGAATTAATGCAGAAAACAGTCAAGAGGAGTATGTACGTGATCAGTTAAATCAAGGAGTGGTACCTGACGACATTGATGTACATTGTTTAGCTGGCCTTATCAAGGCTTGGTTCAGAGAACTCCCAGCTGGGATTTTGGATTCTCTGTCGCCCGAGGAGGTCATGGAGTGCCAGACAGAAGAAGAATGTGCTGACCTAATAAGGCATCTACCTCCTAGTGAAGCTTCTCTGCTGGATTGGGCAATCAACCTAATGGCAGATGTTGTCACGCAGGAACATTTCAACAAAATGAATGCTCGCAACATCGCTATGGTTTTTGCACCAAACATGACTCAGATGGCCGACCCTTTGACGGCATTGATGTATGCTGTTCAAGTTATGAACTTTCTCAGGATGCTGATCTTAAGGACACTCCGAGGAAGGGAAGACTCCATTCTCGACTCTGCTGCTACACATTTAGAGCCGCCTGATGAGAGTGGCCACCAGAGTCCTTCACAGCCCTGCCTTGGAAATACCGTCACTGTATTTCAGGTGGCAGAGCAAACCGTGCCTGAGTTTTTTGCAGAACCGCCTGTTCTAGAAACATATTCCGACTGTAACAAAGGTGCACGTTTTTCTGATGGAGATGTTTTTTCTTTAAGCCATGTCAAGAAACTGTTACCTAATCGATATAGATCTTTACGGAATGCCCACGAAGACAAAGAAGCTGTTACAGGCAATGACATGAAGGCAGAAGTTGTAATCCAAACTGATCTATCAAATGTTCCAAATCTGAAAAAAGAAACTAACAAACTAAATAACCAGAACTCTGTATTCCAAGTCTTGGCACCGGTACCGGTAGAGAAGCGGCTCAGCAACTTTAGTTGTATAAATTCATGGACAGAGCGAATCGAAGCTTGGCGATAA

Protein sequence

MTEVVLHSPSHFASSRRRVSSSSSSSTVTVTCPTPPNDGSLLVNMHSQTPISPSSSSSSVDGDGDVTEIECEVEEVVGKDRFKQRRDQLSLLALVVTLFRKSLIACKSDRRELCAMEIGWPTNVRHVTHVTFDRFNGFLGLPVEFEPEVPRRAPSASTTVFGVSTESMQLSYDSRGNSVPTILILMQHCLYAQGGLQAEGIFRINAENSQEEYVRDQLNQGVVPDDIDVHCLAGLIKAWFRELPAGILDSLSPEEVMECQTEEECADLIRHLPPSEASLLDWAINLMADVVTQEHFNKMNARNIAMVFAPNMTQMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGNTVTVFQVAEQTVPEFFAEPPVLETYSDCNKGARFSDGDVFSLSHVKKLLPNRYRSLRNAHEDKEAVTGNDMKAEVVIQTDLSNVPNLKKETNKLNNQNSVFQVLAPVPVEKRLSNFSCINSWTERIEAWR

Homology

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BLAST of Cucsat.G17340 vs. ExPASy Swiss-Prot
Match: Q9FMR1 (Rho GTPase-activating protein 1 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP1 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-13
Identity = 43/62 (69.35%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 2   QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSA-ATHLEPPDESGHQSPSQPCLG 61
           QM DPLTALMYAVQVMNFL+ LI +TLR R+DS+++ A A  LEP DESGHQSPSQ    
Sbjct: 313 QMDDPLTALMYAVQVMNFLKTLIEKTLRERQDSVVEQAHAFPLEPSDESGHQSPSQSLAF 372

Query: 62  NT 63
           NT
Sbjct: 373 NT 374

[Close]

BLAST of Cucsat.G17340 vs. ExPASy Swiss-Prot
Match: Q9CAX8 (Rho GTPase-activating protein 4 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP4 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.8e-06
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 2   QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDS--AATHLEPPDESGHQSPSQPCL 61
           QM DPLTALMYAVQVMNFL+ LI++TL+ R++S  D    A++  P D +G QS S+  L
Sbjct: 289 QMLDPLTALMYAVQVMNFLKTLIVKTLKDRKES-RDKLVPASNPSPRDHNGDQSSSRQLL 348

Query: 62  GNTVTVFQVAEQTVPEFFAEPPVLETYSD 89
                +    E+T+  F AE    E  +D
Sbjct: 349 H---LMKANKEETLDNFEAEMKDKEESAD 373

[Close]

BLAST of Cucsat.G17340 vs. ExPASy Swiss-Prot
Match: F4JI46 (Rho GTPase-activating protein 2 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP2 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.3e-04
Identity = 40/116 (34.48%), Postives = 55/116 (47.41%), Query Frame = 0


Query: 2   QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN 61
           QM DPLTALM+AVQVMN L+ LI +TL  RE++   S      P   S  Q+ S      
Sbjct: 276 QMTDPLTALMHAVQVMNLLKTLITKTLAEREENATGSEG--YSPSHSSNSQTDSDSDNAQ 335

Query: 62  TVTVFQVAEQTVPEFFAEPPVLETYSDCNKGARFS----DGDVFSLSHVKKLLPNR 114
            + V   ++ T  E   E  V E        +R S    + D+ SL  ++K   N+
Sbjct: 336 DMEVSCESQATDSECGEEEEVEEVEQHQEHLSRHSTHEDETDIGSLCSIEKCFLNQ 389

[Close]

BLAST of Cucsat.G17340 vs. ExPASy Swiss-Prot
Match: Q8GYY5 (Rho GTPase-activating protein 3 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP3 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 6.2e-04
Identity = 23/33 (69.70%), Postives = 29/33 (87.88%), Query Frame = 0


Query: 2   QMADPLTALMYAVQVMNFLRMLILRTLRGREDS 35
           QMADPLTAL++AVQVMNFL+ LIL  L+ RE++
Sbjct: 301 QMADPLTALIHAVQVMNFLKTLILMNLKERENA 333

[Close]

BLAST of Cucsat.G17340 vs. NCBI nr
Match: XP_011657586.1 (rho GTPase-activating protein 1 [Cucumis sativus])

HSP 1 Score: 379 bits (972), Expect = 9.19e-128
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 2   QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN 61
           QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN
Sbjct: 315 QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN 374

Query: 62  TVTVFQVAEQTVPEFFAEPPVLETYSDCNKGARFSDGDVFSLSHVKKLLPNRYRSLRNAH 121
           TVTVFQVAEQTVPEFFAEPPVLETYSDCNKGARFSDGDVFSLSHVKKLLPNRYRSLRNAH
Sbjct: 375 TVTVFQVAEQTVPEFFAEPPVLETYSDCNKGARFSDGDVFSLSHVKKLLPNRYRSLRNAH 434

Query: 122 EDKEAVTGNDMKAEVVIQTDLSNVPNLKKETNKLNNQNSVFQVLAPVPVEKRLSNFSCIN 181
           EDKEAVTGNDMKAEVVIQTDLSNVPNLKKETNKLNNQNSVFQVLAPVPVEKRLSNFSCIN
Sbjct: 435 EDKEAVTGNDMKAEVVIQTDLSNVPNLKKETNKLNNQNSVFQVLAPVPVEKRLSNFSCIN 494

Query: 182 SWTERIEAWR 191
           SWTERIEAWR
Sbjct: 495 SWTERIEAWR 504

[Close]

BLAST of Cucsat.G17340 vs. NCBI nr
Match: KAE8647361.1 (hypothetical protein Csa_002953 [Cucumis sativus])

HSP 1 Score: 379 bits (972), Expect = 9.49e-128
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 2   QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN 61
           QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN
Sbjct: 316 QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN 375

Query: 62  TVTVFQVAEQTVPEFFAEPPVLETYSDCNKGARFSDGDVFSLSHVKKLLPNRYRSLRNAH 121
           TVTVFQVAEQTVPEFFAEPPVLETYSDCNKGARFSDGDVFSLSHVKKLLPNRYRSLRNAH
Sbjct: 376 TVTVFQVAEQTVPEFFAEPPVLETYSDCNKGARFSDGDVFSLSHVKKLLPNRYRSLRNAH 435

Query: 122 EDKEAVTGNDMKAEVVIQTDLSNVPNLKKETNKLNNQNSVFQVLAPVPVEKRLSNFSCIN 181
           EDKEAVTGNDMKAEVVIQTDLSNVPNLKKETNKLNNQNSVFQVLAPVPVEKRLSNFSCIN
Sbjct: 436 EDKEAVTGNDMKAEVVIQTDLSNVPNLKKETNKLNNQNSVFQVLAPVPVEKRLSNFSCIN 495

Query: 182 SWTERIEAWR 191
           SWTERIEAWR
Sbjct: 496 SWTERIEAWR 505

[Close]

BLAST of Cucsat.G17340 vs. NCBI nr
Match: XP_008449576.1 (PREDICTED: rho GTPase-activating protein 1 [Cucumis melo] >KAA0061715.1 rho GTPase-activating protein 1 [Cucumis melo var. makuwa] >TYJ96051.1 rho GTPase-activating protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 367 bits (943), Expect = 2.56e-123
Identity = 184/190 (96.84%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 2   QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN 61
           QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN
Sbjct: 319 QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN 378

Query: 62  TVTVFQVAEQTVPEFFAEPPVLETYSDCNKGARFSDGDVFSLSHVKKLLPNRYRSLRNAH 121
           T+TVFQVAEQT+PEFFAEPPVLETYSDCNKGAR SDGDVFSLSHVKKLLPNRYRSLRNA 
Sbjct: 379 TITVFQVAEQTMPEFFAEPPVLETYSDCNKGARLSDGDVFSLSHVKKLLPNRYRSLRNAQ 438

Query: 122 EDKEAVTGNDMKAEVVIQTDLSNVPNLKKETNKLNNQNSVFQVLAPVPVEKRLSNFSCIN 181
           EDKEAV GNDMKAEVVIQTDLSNVPNLKKETNKLNNQNSVFQVLAPVPVEKRLSN SCIN
Sbjct: 439 EDKEAVAGNDMKAEVVIQTDLSNVPNLKKETNKLNNQNSVFQVLAPVPVEKRLSNLSCIN 498

Query: 182 SWTERIEAWR 191
           SWTERIEAWR
Sbjct: 499 SWTERIEAWR 508

[Close]

BLAST of Cucsat.G17340 vs. NCBI nr
Match: XP_038902710.1 (rho GTPase-activating protein 1 [Benincasa hispida] >XP_038902711.1 rho GTPase-activating protein 1 [Benincasa hispida])

HSP 1 Score: 338 bits (868), Expect = 5.59e-112
Identity = 175/195 (89.74%), Postives = 176/195 (90.26%), Query Frame = 0


Query: 2   QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN 61
           QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN
Sbjct: 314 QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN 373

Query: 62  TVTVFQVAEQTVPEFFAEPPVLETYSDCNKGARFSDGDVFSLSHVKKLLPNRYRSLRNAH 121
           T TVFQVAEQTVPEFFAEPPVLE YSDC +G  FSDGDVFSLSHVKKLLPNRY    NAH
Sbjct: 374 TGTVFQVAEQTVPEFFAEPPVLEMYSDCIEGPDFSDGDVFSLSHVKKLLPNRYGDFLNAH 433

Query: 122 EDKEAVTGNDMKAEVVIQTD-----LSNVPNLKKETNKLNNQNSVFQVLAPVPVEKRLSN 181
           EDKEAV GNDM AEVVIQTD     LSNV NLKKETNKLNNQNSVFQVLAPVPVEKRL N
Sbjct: 434 EDKEAVAGNDMNAEVVIQTDKNRTDLSNVQNLKKETNKLNNQNSVFQVLAPVPVEKRLGN 493

Query: 182 FSCINSWTERIEAWR 191
            SCINSWTERIEAWR
Sbjct: 494 LSCINSWTERIEAWR 508

[Close]

BLAST of Cucsat.G17340 vs. NCBI nr
Match: KAG7010344.1 (Rho GTPase-activating protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277 bits (708), Expect = 4.79e-88
Identity = 149/195 (76.41%), Postives = 161/195 (82.56%), Query Frame = 0


Query: 2   QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN 61
           QMADPLTALMYAVQVMNFLRMLILRTLRGREDS+LDS ATHLEPPDESGHQSPSQPCL N
Sbjct: 304 QMADPLTALMYAVQVMNFLRMLILRTLRGREDSVLDSTATHLEPPDESGHQSPSQPCLRN 363

Query: 62  TVTVFQVAEQTVPEFFAEPPVLETYSDCNKGARFSDGDVFSLSHVKKLLPNRYRSLRNAH 121
           TVT+ QVAEQ  PEF AE PVL+      + A FSDGDVFSLS VKKLLPN Y +L NA+
Sbjct: 364 TVTMVQVAEQAEPEFVAELPVLD-----EEDAHFSDGDVFSLSLVKKLLPNEYGALLNAY 423

Query: 122 EDKEAVTGNDMKAEVVIQTD-----LSNVPNLKKETNKLNNQNSVFQVLAPVPVEKRLSN 181
           +DKE V GND+KAEVVIQT+     LSNV NLK +TNKL NQNSVF+V APVPV+KRLS 
Sbjct: 424 KDKEGVAGNDLKAEVVIQTEKNRTCLSNVSNLKDQTNKLTNQNSVFRVFAPVPVQKRLSK 483

Query: 182 FSCINSWTERIEAWR 191
            SCINS  ERIEAWR
Sbjct: 484 LSCINSSRERIEAWR 493

[Close]

BLAST of Cucsat.G17340 vs. ExPASy TrEMBL
Match: A0A5A7V780 (Rho GTPase-activating protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00100 PE=4 SV=1)

HSP 1 Score: 367 bits (943), Expect = 1.24e-123
Identity = 184/190 (96.84%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 2   QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN 61
           QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN
Sbjct: 319 QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN 378

Query: 62  TVTVFQVAEQTVPEFFAEPPVLETYSDCNKGARFSDGDVFSLSHVKKLLPNRYRSLRNAH 121
           T+TVFQVAEQT+PEFFAEPPVLETYSDCNKGAR SDGDVFSLSHVKKLLPNRYRSLRNA 
Sbjct: 379 TITVFQVAEQTMPEFFAEPPVLETYSDCNKGARLSDGDVFSLSHVKKLLPNRYRSLRNAQ 438

Query: 122 EDKEAVTGNDMKAEVVIQTDLSNVPNLKKETNKLNNQNSVFQVLAPVPVEKRLSNFSCIN 181
           EDKEAV GNDMKAEVVIQTDLSNVPNLKKETNKLNNQNSVFQVLAPVPVEKRLSN SCIN
Sbjct: 439 EDKEAVAGNDMKAEVVIQTDLSNVPNLKKETNKLNNQNSVFQVLAPVPVEKRLSNLSCIN 498

Query: 182 SWTERIEAWR 191
           SWTERIEAWR
Sbjct: 499 SWTERIEAWR 508

[Close]

BLAST of Cucsat.G17340 vs. ExPASy TrEMBL
Match: A0A1S3BN98 (rho GTPase-activating protein 1 OS=Cucumis melo OX=3656 GN=LOC103491418 PE=4 SV=1)

HSP 1 Score: 367 bits (943), Expect = 1.24e-123
Identity = 184/190 (96.84%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 2   QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN 61
           QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN
Sbjct: 319 QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN 378

Query: 62  TVTVFQVAEQTVPEFFAEPPVLETYSDCNKGARFSDGDVFSLSHVKKLLPNRYRSLRNAH 121
           T+TVFQVAEQT+PEFFAEPPVLETYSDCNKGAR SDGDVFSLSHVKKLLPNRYRSLRNA 
Sbjct: 379 TITVFQVAEQTMPEFFAEPPVLETYSDCNKGARLSDGDVFSLSHVKKLLPNRYRSLRNAQ 438

Query: 122 EDKEAVTGNDMKAEVVIQTDLSNVPNLKKETNKLNNQNSVFQVLAPVPVEKRLSNFSCIN 181
           EDKEAV GNDMKAEVVIQTDLSNVPNLKKETNKLNNQNSVFQVLAPVPVEKRLSN SCIN
Sbjct: 439 EDKEAVAGNDMKAEVVIQTDLSNVPNLKKETNKLNNQNSVFQVLAPVPVEKRLSNLSCIN 498

Query: 182 SWTERIEAWR 191
           SWTERIEAWR
Sbjct: 499 SWTERIEAWR 508

[Close]

BLAST of Cucsat.G17340 vs. ExPASy TrEMBL
Match: A0A6J1K4N5 (rho GTPase-activating protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111490729 PE=4 SV=1)

HSP 1 Score: 275 bits (703), Expect = 1.31e-87
Identity = 145/196 (73.98%), Postives = 159/196 (81.12%), Query Frame = 0


Query: 2   QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN 61
           QMADPL ALMYAVQVMNFLRMLI+RTLRGREDSILDSAAT LEP DESGHQSPSQP LGN
Sbjct: 306 QMADPLNALMYAVQVMNFLRMLIVRTLRGREDSILDSAATRLEPSDESGHQSPSQPYLGN 365

Query: 62  TVTVFQVAEQTVPEFFAEPPVLETYSDCNKGARFSDGDVFSLSHVKKLLPNRYRSLRNAH 121
           TVTVFQ +EQ VP+F + PPV+E YSDCN+GA+        LSHVKKLL N Y    NAH
Sbjct: 366 TVTVFQASEQDVPDFLSAPPVIEAYSDCNEGAQ--------LSHVKKLLLNGYGDFLNAH 425

Query: 122 EDKEAVTGNDMKAEVVI------QTDLSNVPNLKKETNKLNNQNSVFQVLAPVPVEKRLS 181
           EDKE V GND+KAE V+      +TD +N   LK+ETNKLNNQNSVF++LAPVPVEKRLS
Sbjct: 426 EDKETVEGNDLKAEEVLCHTEKNKTDQTNDSALKRETNKLNNQNSVFRILAPVPVEKRLS 485

Query: 182 NFSCINSWTERIEAWR 191
           N SCINSWTERIEAWR
Sbjct: 486 NLSCINSWTERIEAWR 493

[Close]

BLAST of Cucsat.G17340 vs. ExPASy TrEMBL
Match: A0A6J1DFJ4 (rho GTPase-activating protein 1 OS=Momordica charantia OX=3673 GN=LOC111020616 PE=4 SV=1)

HSP 1 Score: 274 bits (700), Expect = 6.33e-87
Identity = 147/197 (74.62%), Postives = 161/197 (81.73%), Query Frame = 0


Query: 2   QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN 61
           QMADPLTALMYAVQVMNFLRMLI+R LR REDSILD AATH EP DESGHQSPSQ C G+
Sbjct: 319 QMADPLTALMYAVQVMNFLRMLIIRALRXREDSILDFAATHFEPSDESGHQSPSQSCPGD 378

Query: 62  TVTVFQVAEQTVPEFFAEPPVLETYSDCNKGARFSDGDVFSLSHVKKLLPNRYRSLRNAH 121
           T+ + Q A+Q VPEFFAEPPVLE +SDC +GAR S GDVFS+S  KKLLPN Y +L NAH
Sbjct: 379 TIAISQGADQAVPEFFAEPPVLEAHSDCTEGARLSVGDVFSISSFKKLLPNGYGALPNAH 438

Query: 122 EDKEAVTGNDMKAEVVI------QTDLSNVPNLKKETNKLNNQNS-VFQVLAPVPVEKRL 181
           EDKEAV G+D++AE V+      +TD SN   LKKETNKLNNQNS VFQVLAPV  EKRL
Sbjct: 439 EDKEAVAGDDLEAEEVLPQTEKNKTDQSNGSKLKKETNKLNNQNSSVFQVLAPV--EKRL 498

Query: 182 SNFSCINSWTERIEAWR 191
           SN SCINSWTERIEAWR
Sbjct: 499 SNLSCINSWTERIEAWR 513

[Close]

BLAST of Cucsat.G17340 vs. ExPASy TrEMBL
Match: A0A6J1FYN1 (rho GTPase-activating protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111448868 PE=4 SV=1)

HSP 1 Score: 271 bits (694), Expect = 3.11e-86
Identity = 146/195 (74.87%), Postives = 158/195 (81.03%), Query Frame = 0


Query: 2   QMADPLTALMYAVQVMNFLRMLILRTLRGREDSILDSAATHLEPPDESGHQSPSQPCLGN 61
           QMADPLTALMYAVQVMNFLRMLILRTLRGREDS+LDS ATHLEPPDESGHQSPSQPCL N
Sbjct: 306 QMADPLTALMYAVQVMNFLRMLILRTLRGREDSVLDSTATHLEPPDESGHQSPSQPCLRN 365

Query: 62  TVTVFQVAEQTVPEFFAEPPVLETYSDCNKGARFSDGDVFSLSHVKKLLPNRYRSLRNAH 121
           TVT+ Q AEQ  PEF AE PVL+      + A FSDGDVFSLS VKKLLPN Y +L NA+
Sbjct: 366 TVTMVQAAEQAEPEFVAELPVLD-----EEDAHFSDGDVFSLSLVKKLLPNEYGALLNAY 425

Query: 122 EDKEAVTGNDMKAEVVIQTD-----LSNVPNLKKETNKLNNQNSVFQVLAPVPVEKRLSN 181
           +DKE   GND+KAEVVIQT+     LSNV NLK +TNKL NQNSVF+V APVPV+KRLS 
Sbjct: 426 KDKEGAAGNDLKAEVVIQTEKNRTCLSNVSNLKDQTNKLTNQNSVFRVFAPVPVQKRLSK 485

Query: 182 FSCINSWTERIEAWR 191
            SCIN   ERIEAWR
Sbjct: 486 LSCINLSRERIEAWR 495

The following BLAST results are available for this feature:

BLAST of Cucsat.G17340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMR1	1.9e-13	69.35	Rho GTPase-activating protein 1 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP1 PE=2 ...	[more]
Q9CAX8	1.8e-06	44.94	Rho GTPase-activating protein 4 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP4 PE=2 ...	[more]
F4JI46	1.3e-04	34.48	Rho GTPase-activating protein 2 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP2 PE=1 ...	[more]
Q8GYY5	6.2e-04	69.70	Rho GTPase-activating protein 3 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP3 PE=2 ...	[more]

BLAST of Cucsat.G17340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011657586.1	9.19e-128	100.00	rho GTPase-activating protein 1 [Cucumis sativus]	[more]
KAE8647361.1	9.49e-128	100.00	hypothetical protein Csa_002953 [Cucumis sativus]	[more]
XP_008449576.1	2.56e-123	96.84	PREDICTED: rho GTPase-activating protein 1 [Cucumis melo] >KAA0061715.1 rho GTPa...	[more]
XP_038902710.1	5.59e-112	89.74	rho GTPase-activating protein 1 [Benincasa hispida] >XP_038902711.1 rho GTPase-a...	[more]
KAG7010344.1	4.79e-88	76.41	Rho GTPase-activating protein 1, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]

BLAST of Cucsat.G17340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V780	1.24e-123	96.84	Rho GTPase-activating protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BN98	1.24e-123	96.84	rho GTPase-activating protein 1 OS=Cucumis melo OX=3656 GN=LOC103491418 PE=4 SV=...	[more]
A0A6J1K4N5	1.31e-87	73.98	rho GTPase-activating protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111490729...	[more]
A0A6J1DFJ4	6.33e-87	74.62	rho GTPase-activating protein 1 OS=Momordica charantia OX=3673 GN=LOC111020616 P...	[more]
A0A6J1FYN1	3.11e-86	74.87	rho GTPase-activating protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114488...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000198	Rho GTPase-activating protein domain	PFAM	PF00620	RhoGAP	coord: 6..58 e-value: 2.0E-9 score: 37.4
IPR000198	Rho GTPase-activating protein domain	PROSITE	PS50238	RHOGAP	coord: 1..92 score: 12.996986
IPR008936	Rho GTPase activation protein	GENE3D	1.10.555.10	Rho GTPase activation protein	coord: 2..88 e-value: 1.6E-14 score: 55.5
IPR008936	Rho GTPase activation protein	SUPERFAMILY	48350	GTPase activation domain, GAP	coord: 7..81
None	No IPR available	PANTHER	PTHR23177:SF73	PAK-BOX/P21-RHO-BINDING DOMAIN RHO GTPASE ACTIVATING PROTEIN	coord: 1..247
None	No IPR available	CDD	cd00159	RhoGAP	coord: 4..80 e-value: 5.05832E-13 score: 63.0897
IPR044785	Rho GTPase-activating protein 1-5	PANTHER	PTHR23177	MKIAA1688 PROTEIN	coord: 1..247

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G17340.T2	Cucsat.G17340.T2	mRNA
Cucsat.G17340.T1	Cucsat.G17340.T1	mRNA
Cucsat.G17340.T3	Cucsat.G17340.T3	mRNA
Cucsat.G17340.T6	Cucsat.G17340.T6	mRNA
Cucsat.G17340.T4	Cucsat.G17340.T4	mRNA
Cucsat.G17340.T8	Cucsat.G17340.T8	mRNA
Cucsat.G17340.T7	Cucsat.G17340.T7	mRNA
Cucsat.G17340.T5	Cucsat.G17340.T5	mRNA
Cucsat.G17340.T9	Cucsat.G17340.T9	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0007165	signal transduction
molecular_function	GO:0005096	GTPase activator activity