Cucsat.G17334 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G17334
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Peptidyl-prolyl cis-trans isomerase G
Location	ctg27: 207359 .. 211101 (-)
RNA-Seq Expression	Cucsat.G17334
Synteny	Cucsat.G17334

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATGATATTATTTGTAAAAGTAAATGTAAATAGCAATGAGTTGGGTGAGTTAGTGGTAGTGCGCGTGTTTAAAGAAGCGCGTCTCATAGTTTGTCGGTGAGGTCGTTCGTACTTCGCAATGGGTGCAACTTCTCAAACTCTCAAAGCAAGCCGTTTACCATATTCCAATCCTCTTCCACAAACCGATTTAGACTACAATCAAATCTCCTATTAACCATCTTCCCCTTCCTTCATTATCAAGCAATCCACAACTGTTCTCTTCACCTCCTCAACCCCTTTCTCATTCACTATCTTACGCCAACTTTTATCATGAACTTAGGGTTTTCTCTTCATTAAAAGTAACTTCCTCCTTCTCATTTCCTAACTTCAATTCATCCCAATTCCATCCTTTTTTGGGCTTTCTCTCACTGGGTTTATTGTTTCAGCCTTTTCTAATGATGTCCAGATCCATGTTACTTGTGTTTTTGTTCGTTATTCTCATTATCACTTCGCAGTTCGAGTGGAGGCAACAACTAGTACCTGAGGTTGACTCCACGGTGAACTCCCAGAAGCAGCAGCAGCAGATATCAACGAGGGAAGAAGCAGTTAAGGAGAAGGTAATAAGTCCTCTATTAATTACATTATCAACCAATCGAATTTGTACTTGTGCTTATAATTTATTAGGGTCTAAATTGAATTAGTGTTGAATGTCCGTATGATATTTGTGAAGAAAACTGAATGATTAGTTCACAGGCGCATAGAGATGTGGAGGTGTGTCCATCATGCTAGATTCAGGGTGTAGGGTACTTGCTAAATATGTAATCAAGTGATTTCTTCCTTGGGTATGGTTACAGATGGCATGTTGGGTAGTGTATGTCTGGTACATATAGGAGCTAAGTAGAGCTATAGAAGAGGAATGAGTTATCAATAAATTTAACTTGGGAAGTTTAAGGAGTTCTTGGATAGGATAGTGGGTCAGTAATGCATTATTCATGCTCCCATTATGAGTTTCATTGCCTCCTTTACTTTTTCTGTTTAAAAGTAAAAAGAAAAAGGATTCTAGCGGAGTGATATTTAGTTTTCGGGACTTGACCCTATGTAAAATGCATCTATTTCCTTTATGTGTGATGCACTAGAAATAAAATAGTAATCTAACTGATACTCTTGGCAAGGTCTGACCAATAAACATTTTGATGATTTAATATAGACATGGTATGGCAATAAGTTTAACAATTTACCCTTTGCTGTGGAAATTACATCTGACTTGAAGCAGCAATTGTAACTATTGTCAATGTAATACGTGATTTTTTCCGTGGAATTGCCTAAAAGATATGGAGAATTCACTACATATGTGAATATTATGAATCGGTGTTTCTAATTGTTATATTTTGATTATTGCCAAGCCACTCTCTGTGCTCATGTTTGAAGAAAATATCTCTGTTACCGTTAGTGCTGTCTCATGTCCTTTTCTAAACTACCTTTCTTGTAGATGTTACCTTTAATTTTATGGCATTGAAAGCTTGGTTAGTCCTAGGTAGAGTGTAGCTTTTGAGTAGGAAAGGATTTTCCACACAGTTGCTTGAAAACTATCCAAATTCTATCACATTGACCTGAAATAAGACAATTTAAGCTTTCCTAGGTTTGGATTATTTTGTGTTTTTGGCCTAAGGGCCTAAGGGCCTAAGGCTCTTGAAGTAAAAATATTATGTTGTTTTCTTCTTAAGGATAGACTTGGGGTAAAAATATGATAGGACCCTAATAGTGAGAGTGTATTCACGAAGGAATAAGAAGAGGAAGGAAAAGGGTGACTGAGAGTTAGTTAGTAATTTGGTTTGGTGTGGGCCCTTAGGAATATTGATTGTTAATTTGTTAGGAAGGGCTGAGTAAGTTTGTTATTTTTAGAATATCTCTTTGTTGTTAGGGATGGGCTTCTTTTTGCTCTATAGAGAATTGTGGAGATCGGAAGCCCTCAAATCTTCTCCTGCCGTTGATAAATAAAATTGAGGCCGAGGCCTATCAAAATATTTATCAGTAGATTGTCAAATGAAAGCTTAAATGATATTTACCCGACAATCAAGTTAAATTGCACTGAATTATGAGGCCAGTTAAATGGGTCCTCATCTGTAAGTGAGCCAATTTTTTCTCTCTGCCTTCCAAAAAGTTATAAGTTTCTTTTTGAATCTCTTGTATGATCCAAATTTGTGTTTATTCAAATCGACAGATGAGGCCCTTAAGGTTATATAAAATTTAAAACTTCCTTCCTTTTTTGAATGTTAAAAAATTCCCCTTTGAGCACTCCTTTTGAAGAAATTGACAGAACCATGAAATTTTTGTATCTTATAGTTTTATTATTATTATCTTTTCAGATTTGTTTTGAAGTATACGTTTCTGTTTCATAAAGTTATTAAGGAGTTGATCAGGAGCAGCATTTTAGTTTAGACTTTAGAGGGGTGGAAAAGTAATCTGGCCTTAAGTAAATCATAAGCATCTTTTTAGCCAGCAGGCGTTTGGATAATTAAGCACTTTCTGTTTAAGGATAGACTTAGCTTGACGACTTCTCCACACAATGTTCGATAGAAGACAACCACGGGGTGCCTGTTTGGGTCAGAAACAGAACAATGTAACTATAAAAAGAATAAGGATCAGTTATATTGGTCGAAACTTGAAAGGCACAGAATTTTTCAACCAGATAAAAGAGAATCATTAATGACTATTTTTATCTTCCTCTGGATTGTACCTGACATTGATTTGGAATTCGAGATAAACAATGTTGGTTCCTGATGGGATGATAAGTTACAGTAATTCAAAAGCCTGTCAGTTGGTATGACAAAACTCACTAACTAGTAAATTTCACAGGGAAATGTCATACCAATCCCAAATTTTATTGCTTGGAATTTGTCTACGTGCCTCCATTTTAAATGGAGAGTAGAGTATGACATCAAAAGCGATCATGGGGATCCTTGTTTACTTCCCAGATAGACAACTCAAGTCCTGCCTTTTATTTCCCTTTATTGTCTGAGCATTGTTTTCTTCATTGTGGTACTCTGCTACTTTTTAATTTTTTACACCTATTGTTTTGAATTGGTATGTAGATATTGTTATCACAAGAAAGGAATATCCAGAGGCTCAATGAAGTTGTACGAAGCCTCCGACAACAGTTGCAGCAGTGTAGAGGCAGGAACATTACAAATGGTACAGCTCTACTGAGTGCACATATTCTCGAGCTCGAACGACTTCATGTATTAGAGGACTGATGCAAGGACGCCGCCATGGCCAACAACAAATTGCTAGCTCATCTGTTAACTGTTTTCAGTATGGTTTTTTCTTTGGAAAAACTATGGCAGGGATAGTGGATCATCCCCTCAACCTTTAGAGAGGAAGTTGTGTCAGTTACTGTTGAGGTAAGTTCACTTTGGAGGTATGAGCCTTTTCATGTGTAGATATATCACCTGTGTTCATAATTGTTTGACATCTTATTATTGGCTGTGGATAAAAGAATTCCACCAATCATGAAATTTAATTATCCTACCAAGGTAGGTTTTTCTGTTCCCGGAAGATGAGAGGTATGTTATGTACTATGTACTTCTCAAATTCAATCTCAATCTCAATCTCAATCATGGCTTATCATTAAGCCGTATTTAGGATTTTACAATACCGCAAAAGCAAAACAAGTATAGTAATTCAAATAATCATCTATTGGAATATAGAATGCCTCTAAAACAAACGGGTCGAGCATGAGTAGTATCGAGGTGGCCGGTTACCT

Coding sequence (CDS)

ATGATGTCCAGATCCATGTTACTTGTGTTTTTGTTCGTTATTCTCATTATCACTTCGCAGTTCGAGTGGAGGCAACAACTAGTACCTGAGGTTGACTCCACGGTGAACTCCCAGAAGCAGCAGCAGCAGATATCAACGAGGGAAGAAGCAGTTAAGGAGAAGATATTGTTATCACAAGAAAGGAATATCCAGAGGCTCAATGAAGTTGTACGAAGCCTCCGACAACAGTTGCAGCAGTGTAGAGGCAGGAACATTACAAATGGTACAGCTCTACTGAGTGCACATATTCTCGAGCTCGAACGACTTCATGTATTAGAGGACTGA

Protein sequence

MMSRSMLLVFLFVILIITSQFEWRQQLVPEVDSTVNSQKQQQQISTREEAVKEKILLSQERNIQRLNEVVRSLRQQLQQCRGRNITNGTALLSAHILELERLHVLED

Homology

[Close]

BLAST of Cucsat.G17334 vs. NCBI nr
Match: XP_031743166.1 (uncharacterized protein LOC116404563 [Cucumis sativus] >XP_031743167.1 uncharacterized protein LOC116404563 [Cucumis sativus] >KGN48040.1 hypothetical protein Csa_003587 [Cucumis sativus])

HSP 1 Score: 190 bits (483), Expect = 1.56e-60
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MMSRSMLLVFLFVILIITSQFEWRQQLVPEVDSTVNSQKQQQQISTREEAVKEKILLSQE 60
           MMSRSMLLVFLFVILIITSQFEWRQQLVPEVDSTVNSQKQQQQISTREEAVKEKILLSQE
Sbjct: 1   MMSRSMLLVFLFVILIITSQFEWRQQLVPEVDSTVNSQKQQQQISTREEAVKEKILLSQE 60

Query: 61  RNIQRLNEVVRSLRQQLQQCRGRNITNGTALLSAHILELERLHVLED 107
           RNIQRLNEVVRSLRQQLQQCRGRNITNGTALLSAHILELERLHVLED
Sbjct: 61  RNIQRLNEVVRSLRQQLQQCRGRNITNGTALLSAHILELERLHVLED 107

[Close]

BLAST of Cucsat.G17334 vs. NCBI nr
Match: XP_016900731.1 (PREDICTED: NAC domain-containing protein 40 [Cucumis melo] >KAA0061724.1 NAC domain-containing protein 40 [Cucumis melo var. makuwa])

HSP 1 Score: 186 bits (473), Expect = 6.83e-55
Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MMSRSMLLVFLFVILIITSQFEWRQQLVPEVDSTVNSQKQQQQISTREEAVKEKILLSQE 60
           MMSRSMLLVFLFVILIITSQFEWRQQLVPEVD+TVNSQKQQQQISTREEAVKEKILLSQE
Sbjct: 334 MMSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQKQQQQISTREEAVKEKILLSQE 393

Query: 61  RNIQRLNEVVRSLRQQLQQCRGRNITNGTALLSAHILELERLHVLED 107
           RNIQRLNEVVRSLRQQLQQCRGRNITNGTALL+ HILELERLHVLED
Sbjct: 394 RNIQRLNEVVRSLRQQLQQCRGRNITNGTALLTGHILELERLHVLED 440

[Close]

BLAST of Cucsat.G17334 vs. NCBI nr
Match: XP_022944563.1 (uncharacterized protein LOC111448980 [Cucurbita moschata] >XP_022985896.1 uncharacterized protein LOC111483810 [Cucurbita maxima])

HSP 1 Score: 176 bits (445), Expect = 9.15e-55
Identity = 100/106 (94.34%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 2   MSRSMLLVFLFVILIITSQFEWRQQLVPEVDSTVNSQKQQQQISTREEAVKEKILLSQER 61
           MSRSMLLVFLFVILIITSQFEW+QQLVPEVD+ VNSQKQQQ ISTREEAVKEKILLSQER
Sbjct: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQ-ISTREEAVKEKILLSQER 60

Query: 62  NIQRLNEVVRSLRQQLQQCRGRNITNGTALLSAHILELERLHVLED 107
           NIQRLNEVVRSLR+QLQQCRGRNITNGTALLS HILELERLHVLED
Sbjct: 61  NIQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHVLED 105

[Close]

BLAST of Cucsat.G17334 vs. NCBI nr
Match: XP_038902642.1 (uncharacterized protein LOC120089290 [Benincasa hispida])

HSP 1 Score: 174 bits (441), Expect = 4.10e-54
Identity = 102/109 (93.58%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MMSRSMLLVFLFVILIITSQFEWRQQLVPEVDSTVNSQKQQQQISTREEAVKEKILLSQE 60
           MMSRSMLLVFLFVILIITSQFEWRQQLVPEVD+T+NSQKQQQ ISTREEAVKEKILLSQE
Sbjct: 1   MMSRSMLLVFLFVILIITSQFEWRQQLVPEVDNTLNSQKQQQ-ISTREEAVKEKILLSQE 60

Query: 61  RNIQRLNEVVRSLRQQLQQCRGRNITNGTALLSA--HILELERLHVLED 107
           RNIQRLNEVVRSLR+QLQQCRGRNITNGTALLS   HILELERLHVLED
Sbjct: 61  RNIQRLNEVVRSLREQLQQCRGRNITNGTALLSGQGHILELERLHVLED 108

[Close]

BLAST of Cucsat.G17334 vs. NCBI nr
Match: XP_023512164.1 (uncharacterized protein LOC111776968 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 173 bits (438), Expect = 1.07e-53
Identity = 99/106 (93.40%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 2   MSRSMLLVFLFVILIITSQFEWRQQLVPEVDSTVNSQKQQQQISTREEAVKEKILLSQER 61
           MSRSMLLVFLFVILIITSQFEW+QQLVPEV + VNSQKQQQ ISTREEAVKEKILLSQER
Sbjct: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVHTRVNSQKQQQ-ISTREEAVKEKILLSQER 60

Query: 62  NIQRLNEVVRSLRQQLQQCRGRNITNGTALLSAHILELERLHVLED 107
           NIQRLNEVVRSLR+QLQQCRGRNITNGTALLS HILELERLHVLED
Sbjct: 61  NIQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHVLED 105

[Close]

BLAST of Cucsat.G17334 vs. ExPASy TrEMBL
Match: A0A0A0KEF2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425770 PE=4 SV=1)

HSP 1 Score: 190 bits (483), Expect = 7.56e-61
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MMSRSMLLVFLFVILIITSQFEWRQQLVPEVDSTVNSQKQQQQISTREEAVKEKILLSQE 60
           MMSRSMLLVFLFVILIITSQFEWRQQLVPEVDSTVNSQKQQQQISTREEAVKEKILLSQE
Sbjct: 1   MMSRSMLLVFLFVILIITSQFEWRQQLVPEVDSTVNSQKQQQQISTREEAVKEKILLSQE 60

Query: 61  RNIQRLNEVVRSLRQQLQQCRGRNITNGTALLSAHILELERLHVLED 107
           RNIQRLNEVVRSLRQQLQQCRGRNITNGTALLSAHILELERLHVLED
Sbjct: 61  RNIQRLNEVVRSLRQQLQQCRGRNITNGTALLSAHILELERLHVLED 107

[Close]

BLAST of Cucsat.G17334 vs. ExPASy TrEMBL
Match: A0A5A7V382 (NAC domain-containing protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G00990 PE=4 SV=1)

HSP 1 Score: 186 bits (473), Expect = 3.31e-55
Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MMSRSMLLVFLFVILIITSQFEWRQQLVPEVDSTVNSQKQQQQISTREEAVKEKILLSQE 60
           MMSRSMLLVFLFVILIITSQFEWRQQLVPEVD+TVNSQKQQQQISTREEAVKEKILLSQE
Sbjct: 334 MMSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQKQQQQISTREEAVKEKILLSQE 393

Query: 61  RNIQRLNEVVRSLRQQLQQCRGRNITNGTALLSAHILELERLHVLED 107
           RNIQRLNEVVRSLRQQLQQCRGRNITNGTALL+ HILELERLHVLED
Sbjct: 394 RNIQRLNEVVRSLRQQLQQCRGRNITNGTALLTGHILELERLHVLED 440

[Close]

BLAST of Cucsat.G17334 vs. ExPASy TrEMBL
Match: A0A1S4DXM3 (NAC domain-containing protein 40 OS=Cucumis melo OX=3656 GN=LOC103491667 PE=4 SV=1)

HSP 1 Score: 186 bits (473), Expect = 3.31e-55
Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 1   MMSRSMLLVFLFVILIITSQFEWRQQLVPEVDSTVNSQKQQQQISTREEAVKEKILLSQE 60
           MMSRSMLLVFLFVILIITSQFEWRQQLVPEVD+TVNSQKQQQQISTREEAVKEKILLSQE
Sbjct: 334 MMSRSMLLVFLFVILIITSQFEWRQQLVPEVDTTVNSQKQQQQISTREEAVKEKILLSQE 393

Query: 61  RNIQRLNEVVRSLRQQLQQCRGRNITNGTALLSAHILELERLHVLED 107
           RNIQRLNEVVRSLRQQLQQCRGRNITNGTALL+ HILELERLHVLED
Sbjct: 394 RNIQRLNEVVRSLRQQLQQCRGRNITNGTALLTGHILELERLHVLED 440

[Close]

BLAST of Cucsat.G17334 vs. ExPASy TrEMBL
Match: A0A6J1J9H8 (uncharacterized protein LOC111483810 OS=Cucurbita maxima OX=3661 GN=LOC111483810 PE=4 SV=1)

HSP 1 Score: 176 bits (445), Expect = 4.43e-55
Identity = 100/106 (94.34%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 2   MSRSMLLVFLFVILIITSQFEWRQQLVPEVDSTVNSQKQQQQISTREEAVKEKILLSQER 61
           MSRSMLLVFLFVILIITSQFEW+QQLVPEVD+ VNSQKQQQ ISTREEAVKEKILLSQER
Sbjct: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQ-ISTREEAVKEKILLSQER 60

Query: 62  NIQRLNEVVRSLRQQLQQCRGRNITNGTALLSAHILELERLHVLED 107
           NIQRLNEVVRSLR+QLQQCRGRNITNGTALLS HILELERLHVLED
Sbjct: 61  NIQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHVLED 105

[Close]

BLAST of Cucsat.G17334 vs. ExPASy TrEMBL
Match: A0A6J1FY60 (uncharacterized protein LOC111448980 OS=Cucurbita moschata OX=3662 GN=LOC111448980 PE=4 SV=1)

HSP 1 Score: 176 bits (445), Expect = 4.43e-55
Identity = 100/106 (94.34%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 2   MSRSMLLVFLFVILIITSQFEWRQQLVPEVDSTVNSQKQQQQISTREEAVKEKILLSQER 61
           MSRSMLLVFLFVILIITSQFEW+QQLVPEVD+ VNSQKQQQ ISTREEAVKEKILLSQER
Sbjct: 1   MSRSMLLVFLFVILIITSQFEWKQQLVPEVDTRVNSQKQQQ-ISTREEAVKEKILLSQER 60

Query: 62  NIQRLNEVVRSLRQQLQQCRGRNITNGTALLSAHILELERLHVLED 107
           NIQRLNEVVRSLR+QLQQCRGRNITNGTALLS HILELERLHVLED
Sbjct: 61  NIQRLNEVVRSLREQLQQCRGRNITNGTALLSGHILELERLHVLED 105

The following BLAST results are available for this feature:

BLAST of Cucsat.G17334 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G17334 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031743166.1	1.56e-60	100.00	uncharacterized protein LOC116404563 [Cucumis sativus] >XP_031743167.1 uncharact...	[more]
XP_016900731.1	6.83e-55	97.20	PREDICTED: NAC domain-containing protein 40 [Cucumis melo] >KAA0061724.1 NAC dom...	[more]
XP_022944563.1	9.15e-55	94.34	uncharacterized protein LOC111448980 [Cucurbita moschata] >XP_022985896.1 unchar...	[more]
XP_038902642.1	4.10e-54	93.58	uncharacterized protein LOC120089290 [Benincasa hispida]	[more]
XP_023512164.1	1.07e-53	93.40	uncharacterized protein LOC111776968 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cucsat.G17334 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEF2	7.56e-61	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425770 PE=4 SV=1	[more]
A0A5A7V382	3.31e-55	97.20	NAC domain-containing protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A1S4DXM3	3.31e-55	97.20	NAC domain-containing protein 40 OS=Cucumis melo OX=3656 GN=LOC103491667 PE=4 SV...	[more]
A0A6J1J9H8	4.43e-55	94.34	uncharacterized protein LOC111483810 OS=Cucurbita maxima OX=3661 GN=LOC111483810...	[more]
A0A6J1FY60	4.43e-55	94.34	uncharacterized protein LOC111448980 OS=Cucurbita moschata OX=3662 GN=LOC1114489...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 56..83
None	No IPR available	PANTHER	PTHR34564	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE G	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G17334.T1	Cucsat.G17334.T1	mRNA
Cucsat.G17334.T2	Cucsat.G17334.T2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016853	isomerase activity