Cucsat.G16741 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G16741
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Superoxide dismutase
Location	ctg24: 197502 .. 201880 (-)
RNA-Seq Expression	Cucsat.G16741
Synteny	Cucsat.G16741

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCAAACGCACAGTGCAAGACACGAGCAAAACGGATATGGCCGCATCTATCGCTTTGCCACCTTCCACTAAACTACACCAAAATCAACTTCACCATTCAAGCTTCCGCGGTAGCCCACTGCCACCTTCTGCCACTCCTTGTACCTCAATTAAGCAGGTATTCGTTTTCTGTTGCTTGTTATTTGTTTAATCTCCCGTGAAATTTCATCTCGATACATATGCTTGGTTTGATGGCCATTTCTATGAAAATTGTTCGAACAAGTTGATGGAACTCGGAGTGTTTGTGCGTCTTTTATACACGTATCTTTATACGTGTTTGTATGTCTATGTATGTATGTATGTACAAAAAGTGCTAGAACATGTTGCTGGAGCTTGAACTGTAATCTCTCACTCGTTTTAAAATGAACGTGACTCGAAAATTGGCTATGAGAGTTGAATAGGGAGGAGATGAAGTTAAAAAATTGGATGATAAGAAGCATGGGAATGGATACGAGACACTGGTATAAAAAGATACGGACATGCACGGCACCATATAATTTCATGATAATCTAGGGCAGAAACACAACGAGTACACGTTTTTTTAAATTTATATCAATTTTATACCCGAAGAATGCTCAATTTCAAATTTTATTGATCGTGTTTGGATGCTCGGACACGGACACAGACACTTTACCCAAACTAAAGTTTTTGTGCGTCTTGGTAGACTTATTTAATCCTTTATGTACGCTATAAACAGGCATATTAAGTTTAGATAAGTAATAATTAGTATAGTATCAGAGAGAGAGAGAGAGAGACAAAACTCTTCAATCTATGTTCTCTTTGTTTGGTTTTGGTAGTTTACATGTGACTTCTTGTGCTATTGGCAGTGTTATGAAAATATTGTAGAGATTAAATTTAATATTTTGGAACTTGTCTTGAGAAGTTTTGAAATTTTCATCAGCAAACCTTTTGATGGAATGAATACAAGTGCGGCTAAATTAAGCTCGAACTTTGTTTTTTTTGTGTGGGGCAGAAACAACATGGTTCAAAGACTTATCTCACCAAAATCAGTGCGAAGTTTGAACTGAAGCCTCCTCCATATCCTCTGGTATGTCAGCATGTAATATCACTTGGTTCAACTTTTAACGCTCTCTAGTTTTTAGAAAATAGTAGCTGTAAATGTTTCCTGGGTTTTAGTTGGAGTTTACTTGATTTAACAGCATAATGCCTCTACGATGTTCTTGTCGAGTCTTTAGATTTTAGGAAAACTTGATCTTGTTATCAACCACTTTTGGATAATTTCCCTAAGCTTGAACTCAAGATTCAGAAGGTGTTCCTAGATTCGACGTATTGTCAGTTCTTACCTACAGAATCGCTCCTTGAGGACTCTAGTTAAATATGAAAAACGATACACATGATCATGAATTTGTTATTTGTACCAGTGAACACTACAAGATTTGCATCCCAACGTAACTCATCATTTATTTGAGAATAACGGCCATGAATAAAATCATCTGCCATGGTCAAATGAATTAACTCTCTAGTTTGGTATCTCTTCTTGATGTATCACTCGTTGATTATTTCATTTGCTTCTGTTCACAACAAATGTACGATTGAAAGTTCACCATAACCCAAAAACTTTAGCTTGGTACAGTTGAAATTTAGAAATGTAACAAAAAAGAAAAAAGAAAGAAGACGCTAAGATTCATCGCTTTACTTGTTTGCATTATATGTACTTGTAAATAGGACTACCTCTTTGTCAAAAGAGAGTAAGACTACCTCTTATTTCTACAAAGTGTGCTTCATAGGATGCTTTGGAACCACATATGAGTCGTTCAACCCTTGAGTATCATTGGGGAAAACATCACAGAGCTTATGTGGACAACCTTAACAGACAGATAGAGGGAACTGAGCTGGAGGAATTATCACTAGAAGATATCATAATGAAAACATACAAAAAAGGCAATATCCTTCAGCAATTCAACAATGCAGCACAGGTACACACCTTTCACATAATTACCAACGTCTGTCGCATCGGTTTTTCACGAGATAGTAATCTTACGAGTAAAGAGTGAATTGTGGGTTGGCGATTGATGTTCTTTTATGGTTAAAATAATTTTTTATTTCGTGTATTTTGTTGGTCCCTAAACTTTCAAACATTATGTTTTGGTTCAAGAACATTGTATTGACTATTTTGATCTTGGCTCCTTGCTATAAACATGTATTTTATTAATTTAGCTAATGAGTGGATATCCACAGAAATAAGCGTTCAAAGCTGTTTGATGTTTAGTTTTCAAATGTATTTATATGTTCTTGTTAAGTGCTTATTGAAAAATTACGGACAATTGTTTTTATCTCAAAGTTTAAGGAGCCTATGATAAAGTACAAAAAAAATTCAATCCAAGGAATATACACATAGAAGTCTATAACATGCCATCATAACTGCAAATTTGTAGATCTGGAACCACGATTTTCTCTGGGAGTCCATCAAACCTGGGGGAGGAGGGAGGCCAACAGGGGAACTCCTAGAACTGATTGAAAGAGACTTTGGTTCTTTTGAAAAGTTTTTAGAAGAATTCAAGTCCGCTGCTGCAACGCAGTTTGGTTCTGGTTGGGCTTGGCTTGCATGTAAGCCATATATTCATACTACTTTTGGTTATTTGGATTGAATTTTGAAGTGTTTAAATAGGTGTTTCTAGGTGCAAATTTTTGTAAGCACTTGAGAAAAGCAATTCAAACAAGTCATTGGTCTATTTATATGAATCAATTTTGCTTGAAATTATTCTAAGTTGGGTCTCATTTTCTGTTTTCTAGATAAGGATAACACGGTTGACCATCCACGTCCATCAGAGAAGGACAAAAAGCTTGTTATTCTAAAGAGTCCTAATGCCGTTAACCCACTTGTTTGGGACTATGCTGTGAGTACTGCATCATCTCTTTATCGCATTAACATAGAGAAAAAAGGTATTGGATGTTAAATAGAACAATATAGTATAAACAGAGGAAGCATAGTTTCAGTTTGGTTTTAATTTTGTCCTCTATAGTTCAGAAGTTTCATAATGATCTTCCCAATGGTTTTTTTAAATCTACCAAAAAAAACTTGTTATTAATAGATGCTAACGGTGTTCTTACATCTCAAAAGGGACAACGAGTTGACCTCTAATGGTACTTAACTTATTTGAAAGTTAAACGCTAGCTCACCATTCCATTTTATGCACATCAGCAACTTCTTAACTGCTAGTAGAGCCAGTGGAGACATGGATGGTTAATGTCCCGTTTGATAGCTTATGTTACTACTCCTATCTTTAAATTTCTTTGTTTTGGTATTCATTTTCAACCGTGGTTTTAAAACACCAAGTAAAATTTTGGAAAACAAGACATAATAAATATTTGTTTTCATTTTTGAAATTTGCCTATAATTCAAAGTTTATGTTTATTAAGAAATTTGAAAACTGTGGTAAGAAAATGGGAGCCCCCAAGCATAAAAACAGAAAACTAAATGCAAAATTGTTATTAACATATGGAGGAAAAGCAATTTAAACTTATTTTTACTCTTCCATGTTTTGCAGCCACTTCTTACAATCGACGTTTGGGAGGTAATTTATAATATTTACCATTTTGTTTCCTTTATTTTTCGCTTCGGGTTTCTGGGGTGGGATTTAGAGTTATGTTTGCTTTTGAGAAAAAGAGGAATGACCTTTCTTCAGTACTAATGTTGTGGTTTTTTCCCCGTTCTTTTTTCTCCTTTCCCTTGGATTTGATCTCAACAGCATGCTTATTACCTAGACTTCCAGGTTAGACTTGATCTCATGTCTTATCACTTGTATTATCTTGTTCTTCATTTTTCAATCTCCATTCTTCTGTCCTTATAACATCATTACTTGTTAAAACCGTCCTCCTTGCAGAATCGGCGACCTGATTATATATCAACTTTTGTTTCAAACCTCATATCATGGGAAGCAGCAGACTTGAGGCTACAGAAAGCCAAGATTGAAGCTGCTGAAAGAGTAAAGGAAAAAGAAAAGAAAAAGGAGAAGAAAAAGGACGAAGATAGCGACGAAGAGGTGTACGTCGACAACAGTTCAAGCGAGTCGGATTCGGATTCTGACTAACATTTGCTTCTCTCTTCTCTGGGTTACAGTCTTCATAAAGGTGCATACCATATTTTATTTCTATGCTCTAAAGTCTTGTGGTTTGTTGCTGTGATGAGTTCGTAGACTTTTGAGTCAATGGGTGTAAAGTGAGGATGAAGTGTGTAATTTTGTAGTTTGAGAACATAGGGACTCTTACTTCCACTTTATGCATTATAGAATGCTATGGTCCTTTTGGGAAAAGTATTGGATAATTACATTATATTTTTAGTGATAATAACTTAAGTATATCTTAGGTCGATATTATATTATATTCAAATGTTTATCAATAAGTAGAAACAATTTAGGTATATTCACATCTTTCAATATAATATACATGTGTTTTAAACAA

Coding sequence (CDS)

ATGAGTCGTTCAACCCTTGAGTATCATTGGGGAAAACATCACAGAGCTTATGTGGACAACCTTAACAGACAGATAGAGGGAACTGAGCTGGAGGAATTATCACTAGAAGATATCATAATGAAAACATACAAAAAAGGCAATATCCTTCAGCAATTCAACAATGCAGCACAGATCTGGAACCACGATTTTCTCTGGGAGTCCATCAAACCTGGGGGAGGAGGGAGGCCAACAGGGGAACTCCTAGAACTGATTGAAAGAGACTTTGGTTCTTTTGAAAAGTTTTTAGAAGAATTCAAGTCCGCTGCTGCAACGCAGTTTGGTTCTGGTTGGGCTTGGCTTGCATATAAGGATAACACGGTTGACCATCCACGTCCATCAGAGAAGGACAAAAAGCTTGTTATTCTAAAGAGTCCTAATGCCGTTAACCCACTTGTTTGGGACTATGCTCCACTTCTTACAATCGACGTTTGGGAGCATGCTTATTACCTAGACTTCCAGAATCGGCGACCTGATTATATATCAACTTTTGTTTCAAACCTCATATCATGGGAAGCAGCAGACTTGAGGCTACAGAAAGCCAAGATTGAAGCTGCTGAAAGAGTAAAGGAAAAAGAAAAGAAAAAGGAGAAGAAAAAGGACGAAGATAGCGACGAAGAGGTGTACGTCGACAACAGTTCAAGCGAGTCGGATTCGGATTCTGACTAA

Protein sequence

MSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDIIMKTYKKGNILQQFNNAAQIWNHDFLWESIKPGGGGRPTGELLELIERDFGSFEKFLEEFKSAAATQFGSGWAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYAPLLTIDVWEHAYYLDFQNRRPDYISTFVSNLISWEAADLRLQKAKIEAAERVKEKEKKKEKKKDEDSDEEVYVDNSSSESDSDSD

Homology

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BLAST of Cucsat.G16741 vs. ExPASy Swiss-Prot
Match: Q9LU64 (Superoxide dismutase [Fe] 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FSD2 PE=1 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 1.3e-76
Identity = 141/231 (61.04%), Postives = 174/231 (75.32%), Query Frame = 0


Query: 37  SSFRGSP-LPPSATPCTSIKQKQHGSKTYLTK------ISAKFELKPPPYPLDALEPHMS 96
           SS   SP L PS  P   ++ K++G +   TK      I+A FELKPPPYPLDALEPHMS
Sbjct: 11  SSLLYSPLLLPSQGPNRRMQWKRNGKRRLGTKVAVSGVITAGFELKPPPYPLDALEPHMS 70

Query: 97  RSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDIIMKTYKKGNILQQFNNAAQIWNHD 156
           R TL+YHWGKHH+ YV+NLN+QI GT+L+ LSLE++++ +Y KGN+L  FNNAAQ WNH+
Sbjct: 71  RETLDYHWGKHHKTYVENLNKQILGTDLDALSLEEVVLLSYNKGNMLPAFNNAAQAWNHE 130

Query: 157 FLWESIKPGGGGRPTGELLELIERDFGSFEKFLEEFKSAAATQFGSGWAWLAYKDNTVD- 216
           F WESI+PGGGG+PTGELL LIERDFGSFE+FLE FKSAAA+ FGSGW WLAYK N +D 
Sbjct: 131 FFWESIQPGGGGKPTGELLRLIERDFGSFEEFLERFKSAAASNFGSGWTWLAYKANRLDV 190

Query: 217 ----HPRPSEKDKKLVILKSPNAVNPLVWDYA----VSTASSLYRINIEKK 252
               +P P E+DKKLVI+K+PNAVNPLVWDY+    + T    Y ++ E +
Sbjct: 191 ANAVNPLPKEEDKKLVIVKTPNAVNPLVWDYSPLLTIDTWEHAYYLDFENR 241

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BLAST of Cucsat.G16741 vs. ExPASy Swiss-Prot
Match: P28759 (Superoxide dismutase [Fe], chloroplastic OS=Glycine max OX=3847 GN=SODB PE=2 SV=1)

HSP 1 Score: 263.5 bits (672), Expect = 2.5e-69
Identity = 121/173 (69.94%), Postives = 145/173 (83.82%), Query Frame = 0


Query: 67  KISAKFELKPPPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDII 126
           K++AKFELKPPPYPL+ LEP MS+ TLE+HWGKHH+ YV+NL +Q+ GTEL+  SLE+II
Sbjct: 22  KVNAKFELKPPPYPLNGLEPVMSQQTLEFHWGKHHKTYVENLKKQVVGTELDGKSLEEII 81

Query: 127 MKTYKKGNILQQFNNAAQIWNHDFLWESIKPGGGGRPTGELLELIERDFGSFEKFLEEFK 186
           + +Y KG+IL  FNNAAQ+WNHDF WE +KPGGGG+P+GELLELIERDFGSF KFL+EFK
Sbjct: 82  VTSYNKGDILPAFNNAAQVWNHDFFWECMKPGGGGKPSGELLELIERDFGSFVKFLDEFK 141

Query: 187 SAAATQFGSGWAWLAYK------DNTVDHPRPSEKDKKLVILKSPNAVNPLVW 234
           +AAATQFGSGWAWLAY+      +N  + P P E D KLV+LKSPNAVNPLVW
Sbjct: 142 AAAATQFGSGWAWLAYRARKFDGENVANPPSPDE-DNKLVVLKSPNAVNPLVW 193

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BLAST of Cucsat.G16741 vs. ExPASy Swiss-Prot
Match: P22302 (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia OX=4092 GN=SODB PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 4.6e-63
Identity = 112/165 (67.88%), Postives = 132/165 (80.00%), Query Frame = 0


Query: 71  KFELKPPPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDIIMKTY 130
           KFEL+PPPYP+DALEPHMS  T E+HWGKHHRAYVDNLN+QI+GTEL+  +LEDII+ TY
Sbjct: 1   KFELQPPPYPMDALEPHMSSRTFEFHWGKHHRAYVDNLNKQIDGTELDGKTLEDIILVTY 60

Query: 131 KKGNILQQFNNAAQIWNHDFLWESIKPGGGGRPTGELLELIERDFGSFEKFLEEFKSAAA 190
            KG  L  FNNAAQ WNH F WES+KP GGG P+GELLELI RDFGS++ F++EFK+AAA
Sbjct: 61  NKGAPLPAFNNAAQAWNHQFFWESMKPNGGGEPSGELLELINRDFGSYDAFVKEFKAAAA 120

Query: 191 TQFGSGWAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDY 236
           TQFGSGWAWLAYK           ++KKL ++K+PNA NPLV  Y
Sbjct: 121 TQFGSGWAWLAYK----------PEEKKLALVKTPNAENPLVLGY 155

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BLAST of Cucsat.G16741 vs. ExPASy Swiss-Prot
Match: P21276 (Superoxide dismutase [Fe] 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FSD1 PE=1 SV=4)

HSP 1 Score: 230.7 bits (587), Expect = 1.8e-59
Identity = 106/165 (64.24%), Postives = 129/165 (78.18%), Query Frame = 0


Query: 68  ISAKFELKPPPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDIIM 127
           ++A + LKPPP+ LDALEPHMS+ TLE+HWGKHHRAYVDNL +Q+ GTELE   LE II 
Sbjct: 7   VTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEHIIH 66

Query: 128 KTYKKGNILQQFNNAAQIWNHDFLWESIKPGGGGRPTGELLELIERDFGSFEKFLEEFKS 187
            TY  G++L  FNNAAQ WNH+F WES+KPGGGG+P+GELL L+ERDF S+EKF EEF +
Sbjct: 67  STYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNA 126

Query: 188 AAATQFGSGWAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLV 233
           AAATQFG+GWAWLAY             ++KL ++K+PNAVNPLV
Sbjct: 127 AAATQFGAGWAWLAY------------SNEKLKVVKTPNAVNPLV 159

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BLAST of Cucsat.G16741 vs. ExPASy Swiss-Prot
Match: Q9FMX0 (Superoxide dismutase [Fe] 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FSD3 PE=1 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.6e-50
Identity = 93/169 (55.03%), Postives = 121/169 (71.60%), Query Frame = 0


Query: 67  KISAKFELKPPPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQI-EGTELEELSLEDI 126
           K+ A + LK PPYPLDALEP+MSR TLE HWGKHHR YVDNLN+Q+ +   L   ++E++
Sbjct: 45  KVEAYYGLKTPPYPLDALEPYMSRRTLEVHWGKHHRGYVDNLNKQLGKDDRLYGYTMEEL 104

Query: 127 IMKTYKKGNILQQFNNAAQIWNHDFLWESIKPGGGGRPTGELLELIERDFGSFEKFLEEF 186
           I  TY  GN L +FNNAAQ++NHDF WES++PGGG  P   +LE I++DFGSF  F E+F
Sbjct: 105 IKATYNNGNPLPEFNNAAQVYNHDFFWESMQPGGGDTPQKGVLEQIDKDFGSFTNFREKF 164

Query: 187 KSAAATQFGSGWAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWD 235
            +AA TQFGSGW WL  K           ++++L ++K+ NA+NPLVWD
Sbjct: 165 TNAALTQFGSGWVWLVLK----------REERRLEVVKTSNAINPLVWD 203

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BLAST of Cucsat.G16741 vs. NCBI nr
Match: XP_004146889.2 (superoxide dismutase [Fe], chloroplastic [Cucumis sativus] >KGN53188.1 hypothetical protein Csa_014742 [Cucumis sativus])

HSP 1 Score: 474 bits (1219), Expect = 6.56e-167
Identity = 226/231 (97.84%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 6   KRTVQDTSKTDMAASIALPPSTKLHQNQLHHSSFRGSPLPPSATPCTSIKQKQHGSKTYL 65
           ++T  DTSKTDMAASIALPPSTKLHQNQLHHSSFRGSPLPPSATPCTSIKQKQHGSKTYL
Sbjct: 3   EQTHSDTSKTDMAASIALPPSTKLHQNQLHHSSFRGSPLPPSATPCTSIKQKQHGSKTYL 62

Query: 66  TKISAKFELKPPPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDI 125
           TKISAKFELKPPPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDI
Sbjct: 63  TKISAKFELKPPPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDI 122

Query: 126 IMKTYKKGNILQQFNNAAQIWNHDFLWESIKPGGGGRPTGELLELIERDFGSFEKFLEEF 185
           IMKTYKKGNILQQFNNAAQIWNHDFLWESIKPGGGG+PTGELLELIERDFGSFEKFLEEF
Sbjct: 123 IMKTYKKGNILQQFNNAAQIWNHDFLWESIKPGGGGKPTGELLELIERDFGSFEKFLEEF 182

Query: 186 KSAAATQFGSGWAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA 236
           KSAAATQFGSGWAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA
Sbjct: 183 KSAAATQFGSGWAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA 233

[Close]

BLAST of Cucsat.G16741 vs. NCBI nr
Match: XP_016901582.1 (PREDICTED: superoxide dismutase [Fe], chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 449 bits (1156), Expect = 1.21e-157
Identity = 213/220 (96.82%), Postives = 216/220 (98.18%), Query Frame = 0


Query: 17  MAASIALPPSTKLHQNQLHHSSFRGSPLPPSATPCTSIKQKQHGSKTYLTKISAKFELKP 76
           MAASIALPPSTKLHQN  HHSSFRGSPLPPSA PC+SIKQKQHGSKTYLTKISAKFELKP
Sbjct: 1   MAASIALPPSTKLHQNHFHHSSFRGSPLPPSAFPCSSIKQKQHGSKTYLTKISAKFELKP 60

Query: 77  PPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDIIMKTYKKGNIL 136
           PPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDII KTYKKGNIL
Sbjct: 61  PPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDIITKTYKKGNIL 120

Query: 137 QQFNNAAQIWNHDFLWESIKPGGGGRPTGELLELIERDFGSFEKFLEEFKSAAATQFGSG 196
           QQFNNAAQIWNHDFLWES+KPGGGG+PTGELLELIERDFGSFEKFLEEFKSAAATQFGSG
Sbjct: 121 QQFNNAAQIWNHDFLWESMKPGGGGKPTGELLELIERDFGSFEKFLEEFKSAAATQFGSG 180

Query: 197 WAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA 236
           WAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA
Sbjct: 181 WAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA 220

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BLAST of Cucsat.G16741 vs. NCBI nr
Match: XP_008453838.1 (PREDICTED: superoxide dismutase [Fe], chloroplastic-like isoform X1 [Cucumis melo])

HSP 1 Score: 449 bits (1156), Expect = 1.62e-157
Identity = 213/220 (96.82%), Postives = 216/220 (98.18%), Query Frame = 0


Query: 17  MAASIALPPSTKLHQNQLHHSSFRGSPLPPSATPCTSIKQKQHGSKTYLTKISAKFELKP 76
           MAASIALPPSTKLHQN  HHSSFRGSPLPPSA PC+SIKQKQHGSKTYLTKISAKFELKP
Sbjct: 1   MAASIALPPSTKLHQNHFHHSSFRGSPLPPSAFPCSSIKQKQHGSKTYLTKISAKFELKP 60

Query: 77  PPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDIIMKTYKKGNIL 136
           PPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDII KTYKKGNIL
Sbjct: 61  PPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDIITKTYKKGNIL 120

Query: 137 QQFNNAAQIWNHDFLWESIKPGGGGRPTGELLELIERDFGSFEKFLEEFKSAAATQFGSG 196
           QQFNNAAQIWNHDFLWES+KPGGGG+PTGELLELIERDFGSFEKFLEEFKSAAATQFGSG
Sbjct: 121 QQFNNAAQIWNHDFLWESMKPGGGGKPTGELLELIERDFGSFEKFLEEFKSAAATQFGSG 180

Query: 197 WAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA 236
           WAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA
Sbjct: 181 WAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA 220

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BLAST of Cucsat.G16741 vs. NCBI nr
Match: XP_038888698.1 (superoxide dismutase [Fe], chloroplastic-like [Benincasa hispida])

HSP 1 Score: 422 bits (1086), Expect = 3.61e-145
Identity = 206/227 (90.75%), Postives = 213/227 (93.83%), Query Frame = 0


Query: 10  QDTSKTDMAASIALPPSTKLHQNQLHHSSFRGSPLPPSATPCTSIKQKQHGSKTYLTKIS 69
           +D S+TDMA SIALP STKL QNQL HSSFRGSPLP SA  C+S KQKQH SKT LTKI+
Sbjct: 107 RDRSQTDMA-SIALPLSTKLQQNQLRHSSFRGSPLPQSAISCSSNKQKQHVSKTCLTKIT 166

Query: 70  AKFELKPPPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDIIMKT 129
           AKF+LKPPPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDII KT
Sbjct: 167 AKFDLKPPPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDIITKT 226

Query: 130 YKKGNILQQFNNAAQIWNHDFLWESIKPGGGGRPTGELLELIERDFGSFEKFLEEFKSAA 189
           Y KG+IL QFNNAAQIWNHDFLWESIKPGGGG+PTGELLELIERDFGSFEKFLEEFKSAA
Sbjct: 227 YNKGDILPQFNNAAQIWNHDFLWESIKPGGGGKPTGELLELIERDFGSFEKFLEEFKSAA 286

Query: 190 ATQFGSGWAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA 236
           ATQFGSGWAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA
Sbjct: 287 ATQFGSGWAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA 332

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BLAST of Cucsat.G16741 vs. NCBI nr
Match: APO14280.1 (superoxide dismutase [Luffa aegyptiaca])

HSP 1 Score: 404 bits (1038), Expect = 1.44e-139
Identity = 193/218 (88.53%), Postives = 203/218 (93.12%), Query Frame = 0


Query: 19  ASIALPPSTKLHQNQLHHSSFRGSPLPPSATPCTSIKQKQHGSKTYLTKISAKFELKPPP 78
           ASIALPPSTKL QN L HSSF GSPLPPSA   +S KQKQH SKT LTKI+AKF+LKPPP
Sbjct: 2   ASIALPPSTKLQQNHLRHSSFCGSPLPPSAISLSSNKQKQHVSKTCLTKITAKFDLKPPP 61

Query: 79  YPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDIIMKTYKKGNILQQ 138
           YPLDALEPHMSRSTLEYHWGKHHRAYVDNLN+QIEGTEL+ELSLEDII KTY KG+I  Q
Sbjct: 62  YPLDALEPHMSRSTLEYHWGKHHRAYVDNLNKQIEGTELDELSLEDIIRKTYNKGDIHPQ 121

Query: 139 FNNAAQIWNHDFLWESIKPGGGGRPTGELLELIERDFGSFEKFLEEFKSAAATQFGSGWA 198
           FNNAAQIWNHDFLWESIKPGGGG+PTGELLELIERDFGSFE+FLEEFKSAAATQFGSGWA
Sbjct: 122 FNNAAQIWNHDFLWESIKPGGGGKPTGELLELIERDFGSFEQFLEEFKSAAATQFGSGWA 181

Query: 199 WLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA 236
           WLAYKDNT+DHPRPSEKD+KLVILKSPNAVNPLVW YA
Sbjct: 182 WLAYKDNTIDHPRPSEKDRKLVILKSPNAVNPLVWKYA 219

[Close]

BLAST of Cucsat.G16741 vs. ExPASy TrEMBL
Match: A0A0A0KUG0 (Superoxide dismutase OS=Cucumis sativus OX=3659 GN=Csa_4G025180 PE=3 SV=1)

HSP 1 Score: 474 bits (1219), Expect = 3.17e-167
Identity = 226/231 (97.84%), Postives = 229/231 (99.13%), Query Frame = 0


Query: 6   KRTVQDTSKTDMAASIALPPSTKLHQNQLHHSSFRGSPLPPSATPCTSIKQKQHGSKTYL 65
           ++T  DTSKTDMAASIALPPSTKLHQNQLHHSSFRGSPLPPSATPCTSIKQKQHGSKTYL
Sbjct: 3   EQTHSDTSKTDMAASIALPPSTKLHQNQLHHSSFRGSPLPPSATPCTSIKQKQHGSKTYL 62

Query: 66  TKISAKFELKPPPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDI 125
           TKISAKFELKPPPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDI
Sbjct: 63  TKISAKFELKPPPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDI 122

Query: 126 IMKTYKKGNILQQFNNAAQIWNHDFLWESIKPGGGGRPTGELLELIERDFGSFEKFLEEF 185
           IMKTYKKGNILQQFNNAAQIWNHDFLWESIKPGGGG+PTGELLELIERDFGSFEKFLEEF
Sbjct: 123 IMKTYKKGNILQQFNNAAQIWNHDFLWESIKPGGGGKPTGELLELIERDFGSFEKFLEEF 182

Query: 186 KSAAATQFGSGWAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA 236
           KSAAATQFGSGWAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA
Sbjct: 183 KSAAATQFGSGWAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA 233

[Close]

BLAST of Cucsat.G16741 vs. ExPASy TrEMBL
Match: A0A1S4E016 (Superoxide dismutase OS=Cucumis melo OX=3656 GN=LOC103494442 PE=3 SV=1)

HSP 1 Score: 449 bits (1156), Expect = 5.88e-158
Identity = 213/220 (96.82%), Postives = 216/220 (98.18%), Query Frame = 0


Query: 17  MAASIALPPSTKLHQNQLHHSSFRGSPLPPSATPCTSIKQKQHGSKTYLTKISAKFELKP 76
           MAASIALPPSTKLHQN  HHSSFRGSPLPPSA PC+SIKQKQHGSKTYLTKISAKFELKP
Sbjct: 1   MAASIALPPSTKLHQNHFHHSSFRGSPLPPSAFPCSSIKQKQHGSKTYLTKISAKFELKP 60

Query: 77  PPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDIIMKTYKKGNIL 136
           PPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDII KTYKKGNIL
Sbjct: 61  PPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDIITKTYKKGNIL 120

Query: 137 QQFNNAAQIWNHDFLWESIKPGGGGRPTGELLELIERDFGSFEKFLEEFKSAAATQFGSG 196
           QQFNNAAQIWNHDFLWES+KPGGGG+PTGELLELIERDFGSFEKFLEEFKSAAATQFGSG
Sbjct: 121 QQFNNAAQIWNHDFLWESMKPGGGGKPTGELLELIERDFGSFEKFLEEFKSAAATQFGSG 180

Query: 197 WAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA 236
           WAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA
Sbjct: 181 WAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA 220

[Close]

BLAST of Cucsat.G16741 vs. ExPASy TrEMBL
Match: A0A1S3BY07 (Superoxide dismutase OS=Cucumis melo OX=3656 GN=LOC103494442 PE=3 SV=1)

HSP 1 Score: 449 bits (1156), Expect = 7.83e-158
Identity = 213/220 (96.82%), Postives = 216/220 (98.18%), Query Frame = 0


Query: 17  MAASIALPPSTKLHQNQLHHSSFRGSPLPPSATPCTSIKQKQHGSKTYLTKISAKFELKP 76
           MAASIALPPSTKLHQN  HHSSFRGSPLPPSA PC+SIKQKQHGSKTYLTKISAKFELKP
Sbjct: 1   MAASIALPPSTKLHQNHFHHSSFRGSPLPPSAFPCSSIKQKQHGSKTYLTKISAKFELKP 60

Query: 77  PPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDIIMKTYKKGNIL 136
           PPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDII KTYKKGNIL
Sbjct: 61  PPYPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDIITKTYKKGNIL 120

Query: 137 QQFNNAAQIWNHDFLWESIKPGGGGRPTGELLELIERDFGSFEKFLEEFKSAAATQFGSG 196
           QQFNNAAQIWNHDFLWES+KPGGGG+PTGELLELIERDFGSFEKFLEEFKSAAATQFGSG
Sbjct: 121 QQFNNAAQIWNHDFLWESMKPGGGGKPTGELLELIERDFGSFEKFLEEFKSAAATQFGSG 180

Query: 197 WAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA 236
           WAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA
Sbjct: 181 WAWLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA 220

[Close]

BLAST of Cucsat.G16741 vs. ExPASy TrEMBL
Match: A0A1L5JHX0 (Superoxide dismutase OS=Luffa aegyptiaca OX=3670 PE=2 SV=1)

HSP 1 Score: 404 bits (1038), Expect = 6.96e-140
Identity = 193/218 (88.53%), Postives = 203/218 (93.12%), Query Frame = 0


Query: 19  ASIALPPSTKLHQNQLHHSSFRGSPLPPSATPCTSIKQKQHGSKTYLTKISAKFELKPPP 78
           ASIALPPSTKL QN L HSSF GSPLPPSA   +S KQKQH SKT LTKI+AKF+LKPPP
Sbjct: 2   ASIALPPSTKLQQNHLRHSSFCGSPLPPSAISLSSNKQKQHVSKTCLTKITAKFDLKPPP 61

Query: 79  YPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDIIMKTYKKGNILQQ 138
           YPLDALEPHMSRSTLEYHWGKHHRAYVDNLN+QIEGTEL+ELSLEDII KTY KG+I  Q
Sbjct: 62  YPLDALEPHMSRSTLEYHWGKHHRAYVDNLNKQIEGTELDELSLEDIIRKTYNKGDIHPQ 121

Query: 139 FNNAAQIWNHDFLWESIKPGGGGRPTGELLELIERDFGSFEKFLEEFKSAAATQFGSGWA 198
           FNNAAQIWNHDFLWESIKPGGGG+PTGELLELIERDFGSFE+FLEEFKSAAATQFGSGWA
Sbjct: 122 FNNAAQIWNHDFLWESIKPGGGGKPTGELLELIERDFGSFEQFLEEFKSAAATQFGSGWA 181

Query: 199 WLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA 236
           WLAYKDNT+DHPRPSEKD+KLVILKSPNAVNPLVW YA
Sbjct: 182 WLAYKDNTIDHPRPSEKDRKLVILKSPNAVNPLVWKYA 219

[Close]

BLAST of Cucsat.G16741 vs. ExPASy TrEMBL
Match: A0A6J1CJI8 (Superoxide dismutase OS=Momordica charantia OX=3673 GN=LOC111011738 PE=3 SV=1)

HSP 1 Score: 400 bits (1027), Expect = 3.29e-138
Identity = 190/218 (87.16%), Postives = 204/218 (93.58%), Query Frame = 0


Query: 19  ASIALPPSTKLHQNQLHHSSFRGSPLPPSATPCTSIKQKQHGSKTYLTKISAKFELKPPP 78
           ASIAL PST+L Q QL  SSFRGSPLPPSA   +S KQKQH SKT +TKI+AKF+LKPPP
Sbjct: 2   ASIALSPSTRLQQIQLSRSSFRGSPLPPSAISLSSNKQKQHVSKTRVTKITAKFDLKPPP 61

Query: 79  YPLDALEPHMSRSTLEYHWGKHHRAYVDNLNRQIEGTELEELSLEDIIMKTYKKGNILQQ 138
           YPLDALEPHMSRSTLEYHWGKHHRAYVDNLN+QIEGTEL+ELSLEDII++TY KG+I  Q
Sbjct: 62  YPLDALEPHMSRSTLEYHWGKHHRAYVDNLNKQIEGTELDELSLEDIILRTYNKGDIRPQ 121

Query: 139 FNNAAQIWNHDFLWESIKPGGGGRPTGELLELIERDFGSFEKFLEEFKSAAATQFGSGWA 198
           FNNAAQIWNHDFLWESIKPGGGG+PTGELLELIERDFGSFEKF+EEFKSAAATQFGSGWA
Sbjct: 122 FNNAAQIWNHDFLWESIKPGGGGKPTGELLELIERDFGSFEKFMEEFKSAAATQFGSGWA 181

Query: 199 WLAYKDNTVDHPRPSEKDKKLVILKSPNAVNPLVWDYA 236
           WLAYKDNT+DHPRP+EKDKKLVILKSPNAVNPLVWDYA
Sbjct: 182 WLAYKDNTLDHPRPTEKDKKLVILKSPNAVNPLVWDYA 219

The following BLAST results are available for this feature:

BLAST of Cucsat.G16741 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LU64	1.3e-76	61.04	Superoxide dismutase [Fe] 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FS...	[more]
P28759	2.5e-69	69.94	Superoxide dismutase [Fe], chloroplastic OS=Glycine max OX=3847 GN=SODB PE=2 SV=...	[more]
P22302	4.6e-63	67.88	Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia...	[more]
P21276	1.8e-59	64.24	Superoxide dismutase [Fe] 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FS...	[more]
Q9FMX0	1.6e-50	55.03	Superoxide dismutase [Fe] 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FS...	[more]

BLAST of Cucsat.G16741 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146889.2	6.56e-167	97.84	superoxide dismutase [Fe], chloroplastic [Cucumis sativus] >KGN53188.1 hypotheti...	[more]
XP_016901582.1	1.21e-157	96.82	PREDICTED: superoxide dismutase [Fe], chloroplastic-like isoform X2 [Cucumis mel...	[more]
XP_008453838.1	1.62e-157	96.82	PREDICTED: superoxide dismutase [Fe], chloroplastic-like isoform X1 [Cucumis mel...	[more]
XP_038888698.1	3.61e-145	90.75	superoxide dismutase [Fe], chloroplastic-like [Benincasa hispida]	[more]
APO14280.1	1.44e-139	88.53	superoxide dismutase [Luffa aegyptiaca]	[more]

BLAST of Cucsat.G16741 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUG0	3.17e-167	97.84	Superoxide dismutase OS=Cucumis sativus OX=3659 GN=Csa_4G025180 PE=3 SV=1	[more]
A0A1S4E016	5.88e-158	96.82	Superoxide dismutase OS=Cucumis melo OX=3656 GN=LOC103494442 PE=3 SV=1	[more]
A0A1S3BY07	7.83e-158	96.82	Superoxide dismutase OS=Cucumis melo OX=3656 GN=LOC103494442 PE=3 SV=1	[more]
A0A1L5JHX0	6.96e-140	88.53	Superoxide dismutase OS=Luffa aegyptiaca OX=3670 PE=2 SV=1	[more]
A0A6J1CJI8	3.29e-138	87.16	Superoxide dismutase OS=Momordica charantia OX=3673 GN=LOC111011738 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 100..120
None	No IPR available	COILS	Coil	Coil	coord: 270..300
None	No IPR available	PIRSR	PIRSR000349-1	PIRSR000349-1	coord: 62..275 e-value: 5.4E-64 score: 213.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 282..316
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 301..316
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 282..300
None	No IPR available	PANTHER	PTHR42769:SF8	SUPEROXIDE DISMUTASE [FE] 1, CHLOROPLASTIC	coord: 43..276
None	No IPR available	PANTHER	PTHR42769	SUPEROXIDE DISMUTASE	coord: 43..276
IPR001189	Manganese/iron superoxide dismutase	PRINTS	PR01703	MNSODISMTASE	coord: 70..81 score: 44.85 coord: 187..195 score: 76.8 coord: 91..104 score: 61.55 coord: 134..147 score: 43.28 coord: 235..247 score: 71.13
IPR036324	Manganese/iron superoxide dismutase, N-terminal domain superfamily	GENE3D	1.10.287.990	Fe,Mn superoxide dismutase (SOD) domain	coord: 85..150 e-value: 1.3E-19 score: 72.6
IPR036324	Manganese/iron superoxide dismutase, N-terminal domain superfamily	SUPERFAMILY	46609	Fe,Mn superoxide dismutase (SOD), N-terminal domain	coord: 61..152
IPR019832	Manganese/iron superoxide dismutase, C-terminal	PFAM	PF02777	Sod_Fe_C	coord: 158..269 e-value: 2.1E-35 score: 120.9
IPR019831	Manganese/iron superoxide dismutase, N-terminal	PFAM	PF00081	Sod_Fe_N	coord: 63..150 e-value: 1.3E-21 score: 76.8
IPR036314	Manganese/iron superoxide dismutase, C-terminal domain superfamily	GENE3D	3.55.40.20		coord: 155..295 e-value: 2.6E-41 score: 142.1
IPR036314	Manganese/iron superoxide dismutase, C-terminal domain superfamily	SUPERFAMILY	54719	Fe,Mn superoxide dismutase (SOD), C-terminal domain	coord: 153..275
IPR019833	Manganese/iron superoxide dismutase, binding site	PROSITE	PS00088	SOD_MN	coord: 237..244

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G16741.T6	Cucsat.G16741.T6	mRNA
Cucsat.G16741.T1	Cucsat.G16741.T1	mRNA
Cucsat.G16741.T3	Cucsat.G16741.T3	mRNA
Cucsat.G16741.T8	Cucsat.G16741.T8	mRNA
Cucsat.G16741.T2	Cucsat.G16741.T2	mRNA
Cucsat.G16741.T9	Cucsat.G16741.T9	mRNA
Cucsat.G16741.T10	Cucsat.G16741.T10	mRNA
Cucsat.G16741.T5	Cucsat.G16741.T5	mRNA
Cucsat.G16741.T4	Cucsat.G16741.T4	mRNA
Cucsat.G16741.T7	Cucsat.G16741.T7	mRNA
Cucsat.G16741.T11	Cucsat.G16741.T11	mRNA
Cucsat.G16741.T13	Cucsat.G16741.T13	mRNA
Cucsat.G16741.T12	Cucsat.G16741.T12	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007623	circadian rhythm
biological_process	GO:0019430	removal of superoxide radicals
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0046688	response to copper ion
biological_process	GO:0009642	response to light intensity
biological_process	GO:0010193	response to ozone
biological_process	GO:0006801	superoxide metabolic process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0019904	protein domain specific binding
molecular_function	GO:0004784	superoxide dismutase activity