Cucsat.G15385 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G15385
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	50S ribosomal protein L9, chloroplastic
Location	ctg2009: 2799945 .. 2801390 (-)
RNA-Seq Expression	Cucsat.G15385
Synteny	Cucsat.G15385

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGAAAGAAAAATACTAAATTAAATAATCAAAACCCTAAATCCGTTGCCTCCTCCATCAACCACGATCTCCTCATCCTCCCTACCAAATCATTTTCCGACGCTGTCCACCGCCACGGACGGTCATTCCATACCCCACCGCCGGTAATTCCACCTTTTTTTTTTTTTTTCTACTCCAGTTTTGCTCTTTCTTCTTCCTCACCCACCTGGTTTTGTGTTCATGCACGTCTTAAAAGCTTTTGTGGCTCTAATTTTTCCATTTCCTTATACAGACTTGTCATAAGATCCGAATGGCTTGTATACAGTATTGTAGAAATGCACTCCGGAATATTATTAAAGATACCAAGCTCCATCCTTCTGATCAAATGATGCAGCCATTGTTATTCTCGGGTCAGGGAGTTAGACATAGGAAGTTGGAAGTTATTCTCACAACAGTGAGTATGTGACTTCACTTTTTTTATTCTTTTAGTTTTGATGTCTAACTGTACATTTTTATGGACAGTGAATTGAATATTTCTTACTTTGTTGTTTAAAAAGAGCATTGAAAAGCTTGGGAAAGCTGGAGAGACAGTTAAGGTTGCCCCTGGATACTTCCGGAACCATCTTATGCCCAAGATACTGGCTGTTCCAAATATTGAAAAGTATGCTTATCTGATTAAGGAGCAGCGCAGGGTATGTCTCTTCAATTTGGATCACTCCAGTTACTTTTGATTGTTTTTACATACGTGTTCTGGTGTTCATTGATTAGTTTTAGTTTGTTGTTTCTTCCCAATTGCAAAGAGAGGGGTTGGGGAGAAGACAAATTAATTTAGATTACAGTAAATCCTGCTTCTTTTTACTTGCTAATGGTTGATGTACTTTTTTTTGGGTTTGATTTAAAATTTTTAGCAACCCACATGACAACACATTTGAGTGGTATGAAAATTCATAATCTTTAGTTTAACCAAAGTGTGGGGACTTGGTGGAGTATAGGCTGATTGATTTTGCTGTCATAGCTTTGTTTTCTCATGTTGGGTGTATCTCCATAGTAGAGGACTCAGATGGGTTTCACACTTTTCTATCATTTCAATTTTTTTGAATTTAGATTTACCAACCGGTTGAGGAAGAAGTCGTTAAGGTTGTGACACTGACGAAGGAGGATAAGATGAAAGAATATGAAAAGGCAGCAAGACGTCTGGATAGTAAACAGCTGGTTTGTAACTTCACTTTTTATCCAATTTGTTTGAAGTTGTATACTTAGGTTTGGAACATTTTGGATACCTTGACATTCCTTGATTCATTCAATATTTTATTAGCTATAATTGATGCATGACGTTTTTTTAGGTGTTGAGGAGGTTAATTGACAAGGAAAAATTCCGTACCCGTGCTGCAAAAGATGAGCCCTTAGCTCTGCAATCTTCTGTGACAGTAGACGACATTGTCGCTGAGGTAGGCATTGAAAGATACTTTTCTACTTGTTGAAATGAGAATTTAAATGGTTAGTTATTTATTTATTCCTCAGGTTAGTTGATCTTTTTGAGGTGTGAAACCTTAGAGTATCATAATGTGAAGTTTGAGAATAGGACGGATGTTTTGTGCAAAGTGTAAGCTAGGATTTCAATTGAACTCTTCTCTTCCTTTTTTTTCCTTTGGGGGGTGGGAGGGTGGTTGGCACCTGGTTGAATAAACCGGAGTCTTGTTATCGGCGGTCTTGGGAGTTTGGGGTTAACCAAGAAGTTGTGGGTCCAACGACTGAAAAACATCACTTTCATTTTTTATTAACTTCTTTCATTGTTAACCCACGGCCCAAACTTAACAACTCCCCACGTCTTTTACCAATAGATATAGACCTATTTTTTCTTTTTTAATGTCGATCTAAGCATTTCATTTTTCTTTTCCGGGTCAGGTGGCACGCCAATTTTCTGTTCAAATTGCACCCGAAAATTTGAATTTAGCATCCCCCTTGTCAGCATGTGGTGAATATGAGGTACCACTCCGCTTTCCAAAGTCGATCCCTTTGCCTGAAGGAAAGGTCTACTGGACTCTCAAAGTGAAAGTCCGTAGTAAATAAAAAGTGGTAAACGCTATCTCTCACGTTATGGTGCCTCTGTCTTGGATTTCTTTAGATCGCTAGGCCTTTCAGACTTTTAGTTATTGAGTTGGCTGTTTGCTGGTTCCTCAATGATTGAATTAAAGCTATTTGCTTAACAATATAATGTATTCACACTCTTTGACAACATCAACGTGATAATATATGCGTTGTTGAATTAATTTTCTCTTCTTCTCATTGCATACACTAAGGAGTAAATCGAATTGATCTTCTGCATTTGAATTTATCGTCTCATTCTTTTTGTGCAGAAATGTTCAAGGAATAAATTGTTTTGCTCTTATGCATTCTC

Coding sequence (CDS)

GGAAAGAAAAATACTAAATTAAATAATCAAAACCCTAAATCCGTTGCCTCCTCCATCAACCACGATCTCCTCATCCTCCCTACCAAATCATTTTCCGACGCTGTCCACCGCCACGGACGGTCATTCCATACCCCACCGCCGACTTGTCATAAGATCCGAATGGCTTGTATACAGTATTGTAGAAATGCACTCCGGAATATTATTAAAGATACCAAGCTCCATCCTTCTGATCAAATGATGCAGCCATTGTTATTCTCGGGTCAGGGAGTTAGACATAGGAAGTTGGAAGTTATTCTCACAACAAGCATTGAAAAGCTTGGGAAAGCTGGAGAGACAGTTAAGGTTGCCCCTGGATACTTCCGGAACCATCTTATGCCCAAGATACTGGCTGTTCCAAATATTGAAAAGTATGCTTATCTGATTAAGGAGCAGCGCAGGATTTACCAACCGGTTGAGGAAGAAGTCGTTAAGGTTGTGACACTGACGAAGGAGGATAAGATGAAAGAATATGAAAAGGCAGCAAGACGTCTGGATAGTAAACAGCTGGTGTTGAGGAGGTTAATTGACAAGGAAAAATTCCGTACCCGTGCTGCAAAAGATGAGCCCTTAGCTCTGCAATCTTCTGTGACAGTAGACGACATTGTCGCTGAGGTGGCACGCCAATTTTCTGTTCAAATTGCACCCGAAAATTTGAATTTAGCATCCCCCTTGTCAGCATGTGGTGAATATGAGGTACCACTCCGCTTTCCAAAGTCGATCCCTTTGCCTGAAGGAAAGGTCTACTGGACTCTCAAAGTGAAAGTCCGTAGTAAATAA

Protein sequence

GKKNTKLNNQNPKSVASSINHDLLILPTKSFSDAVHRHGRSFHTPPPTCHKIRMACIQYCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVARQFSVQIAPENLNLASPLSACGEYEVPLRFPKSIPLPEGKVYWTLKVKVRSK

Homology

[Close]

BLAST of Cucsat.G15385 vs. ExPASy Swiss-Prot
Match: A8EXA9 (50S ribosomal protein L9 OS=Rickettsia canadensis (strain McKiel) OX=293613 GN=rplI PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.3e-06
Identity = 30/77 (38.96%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 78  LEVILTTSIEKLGKAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQ----P 137
           +E+IL   + KLGK G+ +KVA G+ RN+L+P+ LA+   E    LI +Q+  ++     
Sbjct: 1   MEIILIKPVRKLGKIGDILKVADGFGRNYLLPQKLAIRATEPNKELIVKQKHEFEAKDKQ 60

Query: 138 VEEEVVKVVTLTKEDKM 151
           + EEV K+  L KE K+
Sbjct: 61  IREEVEKINALIKEQKL 77

[Close]

BLAST of Cucsat.G15385 vs. ExPASy Swiss-Prot
Match: B3E6H6 (50S ribosomal protein L9 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) OX=398767 GN=rplI PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.6e-06
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 78  LEVILTTSIEKLGKAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRR 130
           +++IL  +IE LG+ G+ VKVAPGY RN+L+PK LA+   EK A  ++  +R
Sbjct: 1   MKLILKENIEHLGQIGDIVKVAPGYARNYLLPKGLAIEATEKNAKALEHAKR 52

[Close]

BLAST of Cucsat.G15385 vs. ExPASy Swiss-Prot
Match: A8GLX8 (50S ribosomal protein L9 OS=Rickettsia akari (strain Hartford) OX=293614 GN=rplI PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.6e-06
Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 78  LEVILTTSIEKLGKAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQ----P 137
           +E+IL   + KLGK G+ +KVA G+ RN+L+P+ LA+   E    LI +Q+  ++     
Sbjct: 1   MEIILIKPVRKLGKIGDMLKVADGFGRNYLLPQKLAIRATEPNKELIVKQKHEFEAKDKQ 60

Query: 138 VEEEVVKVVTLTKEDKM 151
           + EEV K+  L K+ K+
Sbjct: 61  IREEVEKINALIKDQKL 77

[Close]

BLAST of Cucsat.G15385 vs. ExPASy Swiss-Prot
Match: Q4UN66 (50S ribosomal protein L9 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) OX=315456 GN=rplI PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.6e-06
Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 78  LEVILTTSIEKLGKAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQ----P 137
           +E+IL   + KLGK G+ +KVA G+ RN+L+P+ LA+   E    LI +Q+  ++     
Sbjct: 1   MEIILIKPVRKLGKIGDMLKVADGFGRNYLLPQKLAIRATEPNKELIVKQKHEFEAKDKQ 60

Query: 138 VEEEVVKVVTLTKEDKM 151
           + EEV K+  L K+ K+
Sbjct: 61  IREEVEKINALIKDQKL 77

[Close]

BLAST of Cucsat.G15385 vs. ExPASy Swiss-Prot
Match: A8F0E7 (50S ribosomal protein L9 OS=Rickettsia massiliae (strain Mtu5) OX=416276 GN=rplI PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 9.6e-06
Identity = 29/77 (37.66%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 78  LEVILTTSIEKLGKAGETVKVAPGYFRNHLMPKILAVPNIEKYAYLIKEQRRIYQ----P 137
           +E+IL   + KLGK G+ +KVA G+ RN+L+P+ LA+   E    LI +Q+  ++     
Sbjct: 1   MEIILIKPVRKLGKIGDILKVADGFGRNYLLPQKLAIRATEPNKELIVKQKHEFEAKDKQ 60

Query: 138 VEEEVVKVVTLTKEDKM 151
           + EEV K+  L K+ K+
Sbjct: 61  IREEVEKINALIKDQKL 77

[Close]

BLAST of Cucsat.G15385 vs. NCBI nr
Match: XP_004146229.1 (uncharacterized protein LOC101217377 [Cucumis sativus] >KAE8650546.1 hypothetical protein Csa_009654 [Cucumis sativus])

HSP 1 Score: 307 bits (787), Expect = 1.93e-103
Identity = 163/167 (97.60%), Postives = 163/167 (97.60%), Query Frame = 0


Query: 42  YCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETVKVAPG 101
           YCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETVKVAPG
Sbjct: 6   YCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETVKVAPG 65

Query: 102 YFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLD 161
           YFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLD
Sbjct: 66  YFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLD 125

Query: 162 SKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVGIERYFS 208
           SKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEV   R FS
Sbjct: 126 SKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVA--RQFS 170

[Close]

BLAST of Cucsat.G15385 vs. NCBI nr
Match: XP_008455982.1 (PREDICTED: 50S ribosomal protein L9 [Cucumis melo])

HSP 1 Score: 290 bits (743), Expect = 9.58e-97
Identity = 155/167 (92.81%), Postives = 158/167 (94.61%), Query Frame = 0


Query: 42  YCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETVKVAPG 101
           Y RNALR IIKDT LHPSDQMMQPLLF+GQGVRHRKLEVILTTSIEKLGKAGETVKVAPG
Sbjct: 6   YGRNALRKIIKDTTLHPSDQMMQPLLFTGQGVRHRKLEVILTTSIEKLGKAGETVKVAPG 65

Query: 102 YFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLD 161
           YFRNHLMPKILAVPNIEKYA+LIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAA+RLD
Sbjct: 66  YFRNHLMPKILAVPNIEKYAHLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAAKRLD 125

Query: 162 SKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVGIERYFS 208
            KQLVLRRLIDKEKFRTRA KDEPLALQSSVTVDDIVAEV   R FS
Sbjct: 126 CKQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDIVAEVA--RQFS 170

[Close]

BLAST of Cucsat.G15385 vs. NCBI nr
Match: XP_038895552.1 (50S ribosomal protein L9 [Benincasa hispida])

HSP 1 Score: 285 bits (728), Expect = 1.83e-94
Identity = 150/167 (89.82%), Postives = 158/167 (94.61%), Query Frame = 0


Query: 42  YCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETVKVAPG 101
           Y RNALR IIKDT+LHPSD+MMQPLLFS QGVRHRKLEVILTTSIEKLGKAGETVKVAPG
Sbjct: 6   YGRNALRQIIKDTRLHPSDRMMQPLLFSSQGVRHRKLEVILTTSIEKLGKAGETVKVAPG 65

Query: 102 YFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLD 161
           +FRNHLMPK+LAVPNI+KYAYLIKEQRRIYQPV+EEVVKVVT+TKEDKMKEYEKAA+RLD
Sbjct: 66  FFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVDEEVVKVVTVTKEDKMKEYEKAAKRLD 125

Query: 162 SKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVGIERYFS 208
           S QLVLRRLIDKEKFRTRA KDEPLALQSSVTVDDIVAEV   R FS
Sbjct: 126 STQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDIVAEVA--RQFS 170

[Close]

BLAST of Cucsat.G15385 vs. NCBI nr
Match: KAG6574247.1 (hypothetical protein SDJN03_28134, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283 bits (724), Expect = 7.45e-94
Identity = 146/161 (90.68%), Postives = 155/161 (96.27%), Query Frame = 0


Query: 42  YCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETVKVAPG 101
           Y +NAL+ IIKDT+LHPSD+MMQPLLFS QGVRHRKLEVILTTSIEKLGKAGETVKVAPG
Sbjct: 6   YGKNALQRIIKDTRLHPSDRMMQPLLFSSQGVRHRKLEVILTTSIEKLGKAGETVKVAPG 65

Query: 102 YFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLD 161
           YFRNHLMPK+LAVPNI+KYAYLIKEQRRIYQPVEEEVVKVVT+TKEDKMKEYEKAA+RLD
Sbjct: 66  YFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEVVKVVTVTKEDKMKEYEKAAKRLD 125

Query: 162 SKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVG 202
           S QLVLRRLIDKEKFRTRA KDEPLALQSSVTVDD+VAEV 
Sbjct: 126 STQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDLVAEVA 166

[Close]

BLAST of Cucsat.G15385 vs. NCBI nr
Match: XP_023541498.1 (uncharacterized protein LOC111801661 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 283 bits (724), Expect = 7.45e-94
Identity = 146/161 (90.68%), Postives = 155/161 (96.27%), Query Frame = 0


Query: 42  YCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETVKVAPG 101
           Y +NAL+ IIKDT+LHPSD+MMQPLLFS QGVRHRKLEVILTTSIEKLGKAGETVKVAPG
Sbjct: 6   YGKNALQRIIKDTRLHPSDRMMQPLLFSSQGVRHRKLEVILTTSIEKLGKAGETVKVAPG 65

Query: 102 YFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLD 161
           YFRNHLMPK+LAVPNI+KYAYLIKEQRRIYQPVEEEVVKVVT+TKEDKMKEYEKAA+RLD
Sbjct: 66  YFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEVVKVVTVTKEDKMKEYEKAAKRLD 125

Query: 162 SKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVG 202
           S QLVLRRLIDKEKFRTRA KDEPLALQSSVTVDD+VAEV 
Sbjct: 126 STQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDLVAEVA 166

[Close]

BLAST of Cucsat.G15385 vs. ExPASy TrEMBL
Match: A0A0A0LAH8 (50S ribosomal protein L9, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_3G238230 PE=3 SV=1)

HSP 1 Score: 382 bits (981), Expect = 3.12e-132
Identity = 204/219 (93.15%), Postives = 204/219 (93.15%), Query Frame = 0


Query: 1   LNNQNPKSVASSINHDLLILPTKSFSDAVHRHGRSFHTPPP-----------YCRNALRN 60
           LNNQNPKSVASSINHDLLILPTKSFSDAVHRHGRSFHTPPP           YCRNALRN
Sbjct: 24  LNNQNPKSVASSINHDLLILPTKSFSDAVHRHGRSFHTPPPTCHKIRMACIQYCRNALRN 83

Query: 61  IIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETVKVAPGYFRNHLMP 120
           IIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETVKVAPGYFRNHLMP
Sbjct: 84  IIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETVKVAPGYFRNHLMP 143

Query: 121 KILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVLRR 180
           KILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVLRR
Sbjct: 144 KILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLDSKQLVLRR 203

Query: 181 LIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVGIERYFS 208
           LIDKEKFRTRAAKDEPLALQSSVTVDDIVAEV   R FS
Sbjct: 204 LIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVA--RQFS 240

[Close]

BLAST of Cucsat.G15385 vs. ExPASy TrEMBL
Match: A0A1S3C248 (50S ribosomal protein L9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496047 PE=3 SV=1)

HSP 1 Score: 290 bits (743), Expect = 4.64e-97
Identity = 155/167 (92.81%), Postives = 158/167 (94.61%), Query Frame = 0


Query: 42  YCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETVKVAPG 101
           Y RNALR IIKDT LHPSDQMMQPLLF+GQGVRHRKLEVILTTSIEKLGKAGETVKVAPG
Sbjct: 6   YGRNALRKIIKDTTLHPSDQMMQPLLFTGQGVRHRKLEVILTTSIEKLGKAGETVKVAPG 65

Query: 102 YFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLD 161
           YFRNHLMPKILAVPNIEKYA+LIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAA+RLD
Sbjct: 66  YFRNHLMPKILAVPNIEKYAHLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAAKRLD 125

Query: 162 SKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVGIERYFS 208
            KQLVLRRLIDKEKFRTRA KDEPLALQSSVTVDDIVAEV   R FS
Sbjct: 126 CKQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDIVAEVA--RQFS 170

[Close]

BLAST of Cucsat.G15385 vs. ExPASy TrEMBL
Match: A0A6J1HYV2 (50S ribosomal protein L9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467481 PE=3 SV=1)

HSP 1 Score: 283 bits (724), Expect = 3.61e-94
Identity = 146/161 (90.68%), Postives = 155/161 (96.27%), Query Frame = 0


Query: 42  YCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETVKVAPG 101
           Y +NAL+ IIKDT+LHPSD+MMQPLLFS QGVRHRKLEVILTTSIEKLGKAGETVKVAPG
Sbjct: 6   YGKNALQRIIKDTRLHPSDRMMQPLLFSSQGVRHRKLEVILTTSIEKLGKAGETVKVAPG 65

Query: 102 YFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLD 161
           YFRNHLMPK+LAVPNI+KYAYLIKEQRRIYQPVEEEVVKVVT+TKEDKMKEYEKAA+RLD
Sbjct: 66  YFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEVVKVVTVTKEDKMKEYEKAAKRLD 125

Query: 162 SKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVG 202
           S QLVLRRLIDKEKFRTRA KDEPLALQSSVTVDD+VAEV 
Sbjct: 126 STQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDLVAEVA 166

[Close]

BLAST of Cucsat.G15385 vs. ExPASy TrEMBL
Match: A0A6J1FZ52 (50S ribosomal protein L9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111449243 PE=3 SV=1)

HSP 1 Score: 283 bits (723), Expect = 5.12e-94
Identity = 145/161 (90.06%), Postives = 155/161 (96.27%), Query Frame = 0


Query: 42  YCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETVKVAPG 101
           Y +NAL+ IIKDT+LHPSD+MMQPLLFS QGVRHRKLEVILTTSIEKLGKAGETVKVAPG
Sbjct: 6   YGKNALQRIIKDTRLHPSDRMMQPLLFSSQGVRHRKLEVILTTSIEKLGKAGETVKVAPG 65

Query: 102 YFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLD 161
           YFRNHLMPK+LAVPNI+KYAYL+KEQRRIYQPVEEEVVKVVT+TKEDKMKEYEKAA+RLD
Sbjct: 66  YFRNHLMPKLLAVPNIDKYAYLVKEQRRIYQPVEEEVVKVVTVTKEDKMKEYEKAAKRLD 125

Query: 162 SKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVG 202
           S QLVLRRLIDKEKFRTRA KDEPLALQSSVTVDD+VAEV 
Sbjct: 126 STQLVLRRLIDKEKFRTRATKDEPLALQSSVTVDDLVAEVA 166

[Close]

BLAST of Cucsat.G15385 vs. ExPASy TrEMBL
Match: A0A6J1CID3 (50S ribosomal protein L9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011756 PE=3 SV=1)

HSP 1 Score: 277 bits (708), Expect = 9.79e-92
Identity = 143/161 (88.82%), Postives = 152/161 (94.41%), Query Frame = 0


Query: 42  YCRNALRNIIKDTKLHPSDQMMQPLLFSGQGVRHRKLEVILTTSIEKLGKAGETVKVAPG 101
           Y RNALR IIKDT+LH SDQM+QPLLF  QGVRHRKLEVILTTSIEKLGKAGETVKVAPG
Sbjct: 6   YGRNALRQIIKDTRLHTSDQMIQPLLFRSQGVRHRKLEVILTTSIEKLGKAGETVKVAPG 65

Query: 102 YFRNHLMPKILAVPNIEKYAYLIKEQRRIYQPVEEEVVKVVTLTKEDKMKEYEKAARRLD 161
           +FRNHLMPK+LAVPNI+KYAYLIKEQRRIYQPVEEE+VKVVT+TKEDKMKEYEKAA+RLD
Sbjct: 66  FFRNHLMPKLLAVPNIDKYAYLIKEQRRIYQPVEEEIVKVVTVTKEDKMKEYEKAAKRLD 125

Query: 162 SKQLVLRRLIDKEKFRTRAAKDEPLALQSSVTVDDIVAEVG 202
           S QLVLRRLIDKEKFR RA KDEPLALQSSVTVDD+VAEV 
Sbjct: 126 STQLVLRRLIDKEKFRARATKDEPLALQSSVTVDDLVAEVA 166

The following BLAST results are available for this feature:

BLAST of Cucsat.G15385 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8EXA9	4.3e-06	38.96	50S ribosomal protein L9 OS=Rickettsia canadensis (strain McKiel) OX=293613 GN=r...	[more]
B3E6H6	9.6e-06	48.08	50S ribosomal protein L9 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 ...	[more]
A8GLX8	9.6e-06	37.66	50S ribosomal protein L9 OS=Rickettsia akari (strain Hartford) OX=293614 GN=rplI...	[more]
Q4UN66	9.6e-06	37.66	50S ribosomal protein L9 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) O...	[more]
A8F0E7	9.6e-06	37.66	50S ribosomal protein L9 OS=Rickettsia massiliae (strain Mtu5) OX=416276 GN=rplI...	[more]

BLAST of Cucsat.G15385 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146229.1	1.93e-103	97.60	uncharacterized protein LOC101217377 [Cucumis sativus] >KAE8650546.1 hypothetica...	[more]
XP_008455982.1	9.58e-97	92.81	PREDICTED: 50S ribosomal protein L9 [Cucumis melo]	[more]
XP_038895552.1	1.83e-94	89.82	50S ribosomal protein L9 [Benincasa hispida]	[more]
KAG6574247.1	7.45e-94	90.68	hypothetical protein SDJN03_28134, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023541498.1	7.45e-94	90.68	uncharacterized protein LOC111801661 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cucsat.G15385 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAH8	3.12e-132	93.15	50S ribosomal protein L9, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_3G2382...	[more]
A0A1S3C248	4.64e-97	92.81	50S ribosomal protein L9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496047 ...	[more]
A0A6J1HYV2	3.61e-94	90.68	50S ribosomal protein L9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467...	[more]
A0A6J1FZ52	5.12e-94	90.06	50S ribosomal protein L9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1CID3	9.79e-92	88.82	50S ribosomal protein L9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036791	Ribosomal protein L9, C-terminal domain superfamily	GENE3D	3.10.430.100		coord: 41..146 e-value: 4.0E-7 score: 32.0
IPR036791	Ribosomal protein L9, C-terminal domain superfamily	SUPERFAMILY	55653	Ribosomal protein L9 C-domain	coord: 43..144
IPR020069	Ribosomal protein L9, C-terminal	PFAM	PF03948	Ribosomal_L9_C	coord: 76..128 e-value: 1.9E-5 score: 25.0
None	No IPR available	PANTHER	PTHR21368:SF24	BNAA02G10490D PROTEIN	coord: 1..146
IPR000244	Ribosomal protein L9	PANTHER	PTHR21368	50S RIBOSOMAL PROTEIN L9	coord: 1..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G15385.T1	Cucsat.G15385.T1	mRNA
Cucsat.G15385.T7	Cucsat.G15385.T7	mRNA
Cucsat.G15385.T4	Cucsat.G15385.T4	mRNA
Cucsat.G15385.T2	Cucsat.G15385.T2	mRNA
Cucsat.G15385.T3	Cucsat.G15385.T3	mRNA
Cucsat.G15385.T11	Cucsat.G15385.T11	mRNA
Cucsat.G15385.T6	Cucsat.G15385.T6	mRNA
Cucsat.G15385.T5	Cucsat.G15385.T5	mRNA
Cucsat.G15385.T8	Cucsat.G15385.T8	mRNA
Cucsat.G15385.T9	Cucsat.G15385.T9	mRNA
Cucsat.G15385.T10	Cucsat.G15385.T10	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome