Cucsat.G13693 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G13693
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Glycine rich RNA binding protein
Location	ctg184: 1052681 .. 1054974 (-)
RNA-Seq Expression	Cucsat.G13693
Synteny	Cucsat.G13693

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTGTTATATTTACGAAAATTTACTTTCAAAATATAATATCGATAAAAGGTAAGTATAAATAAAAATCACAATACAAACGTTTTGAAGAAGAAGTAAAGGCCAACAGTTGTGTAGCCCAGAACTCAAACCCTAAACCCTACATATCTCTCCGTCGCACCGCTCTTCTCTTTTTCATCGGCCCATCGGGAATCATATGGCTTTCTTCTCCACCGTAAGGCGCGTTCTTAATGGATCTTCTTCTTCTTCTTCTTCCTCTTCCATTCTCCGATCCCAATGGAATGCCGTTCGTCTCAGCTCAACTCTCACATCACCCAAACTCTTCATCAGTGGTAAGCCTCACAGAACCATCTTGTGCTACGCCTTTCTTCTTATTTGGATTATTGAGAATTATTCAGAATTTTGGTATTGGGATCAATTTTCTGGTTGGATTATGAGAAATTTCCTGTATTCTTGCTCACCCTTCATTTCTTACATTTGAACAATAGTTACGAAGAACTAAATGGGAGATATAGTTAATTAACTATGCTCTGTTCCGTTACTTTTATCCCATTTGTTTATGGTCTTTGTGTTTCTATTTACATTTATGAAATTGCTTCAGTTTTCAGTAAGTGGTGGGGCTTGTTTGGGTGTAGGAATTTAGAAAATTATTCCTATCCTTATCATTCATCAATCATGCGTGCTGCTTGATAGCTTAAGCAATTAAGAAAGAATCATCATAGTTGGCTTGGTAAGAAGTCGGCAGTCGCTTATCTAAAATTTAATATCCTAATTTCTCCTTGACACCCTAATGTTGTAAGGTTAGAATGGATTGTCCGTTAAACCTAGTCCAAATACTCACAAATATATATATTAAAAATATTGAGGTCGTATAACTTGAATTGTTGTAAGAAAGTTAATTCATTTCTTATGCAACACAATGTTCCCTTTGCATTCGAAGGACTGCAGTTTGATTAACAAACCTTGCAAAGAACGAAGGGAGTAGGTATACAAAAATCCCCCCCCCCCCCCCCCCCCCCCCATCCCCACACACACAGAGAGAAGAAGAACAAAGAAAGAAAGAAAAGAAGATGAACCTTCTCATTAGAAAAAGTTCACTAGACAGCACCCTTATTGCCTGCATCTTCGAATCCTTTATAAATCCTTCATTTGTTCTTTCATTCTGTAAGAAACACCTCTCAATTAATGAAGGGGTAGTGGTATTAGAAACCCATCTCTTCTCTCTTTTTTTTTTTATTTTTGTAAGTATGGTAGTTTTGTTTGTGTATAATTCGAATATCATAAAGATTTCCATATATGTCAAGTCCCTTTAGTGGAGTTCTCGGTCTGCCAATATACCCCAAGAAGTAGACAGAGTTACAATGCACATTTAGAAAATTCTAGGAATTTGTTGTTGATAGATAGAATGGGTCCAAAGACCAAGTCAACATATCCGGTATAAATAGGGTCGAACAAATATGATTTTTTTTCTTAATCTAATATTCTTTTATGAATTAAAGAGTAGTAGAGTATAGAAGTACATAACAAATTTAGATGGGATATGCCTGGTGAAAGTCTCACTTCTATAAAACGACAGGTCTTTCGAGATTAACAACAGATGAGAAGCTCCGAGAAGCCTTTTCTTCCTTTGGTCAGCTTGTAGATGGTATAGCACTCTCTCCCTCTCTCCAATTTACAAATCTATGAACATTTGTTCCAGAGTGCAACATCTTGACATTGCCTCAACATTTGTACAGCAAAGGTTGTAACCGATAGGGCGACGGGAAGATCAAAGGGATTTGCATTTGTGACCTACAGTACAATAGACGAGGCTGAGAAAGCTAGAGAAGAAATGAATGCAAAGTTTCTTGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGATAATTGCTTGCAGAATTTTTGAAATCTCATAGCATTTGGTCATTTTTTCCAATTGCATATGGTTGAGTCGGATGTATGTTCTTCATCCATGGGTACTATAGATAAAATTCATGAACACCACTCTCAAGGTGGCCTCAAAACTGCGAGAAATTGCGCATTATTTTGTTATAGATATGGATTTGGATTCAGAAAAGTATTTACTGACCTTAGGTTTATTACCCATATTTTAATTCTTAACTTCTTATATGTATTTTGTTTTAGTTCCTATATTTAATAATTATTCTATTTTGATATCTAATTTTATGTGAAAATTGGAAACATCTTTTG

Coding sequence (CDS)

ATGGCTTTCTTCTCCACCGTAAGGCGCGTTCTTAATGGATCTTCTTCTTCTTCTTCTTCCTCTTCCATTCTCCGATCCCAATGGAATGCCGTTCGTCTCAGCTCAACTCTCACATCACCCAAACTCTTCATCAGTGGTCTTTCGAGATTAACAACAGATGAGAAGCTCCGAGAAGCCTTTTCTTCCTTTGGTCAGCTTGTAGATGCAAAGGTTGTAACCGATAGGGCGACGGGAAGATCAAAGGGATTTGCATTTGTGACCTACAGTACAATAGACGAGGCTGAGAAAGCTAGAGAAGAAATGAATGCAAAGTTTCTTGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCTCCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGATAA

Protein sequence

MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG

Homology

[Close]

BLAST of Cucsat.G13693 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.3e-22
Identity = 52/94 (55.32%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 39  SPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAR 98
           S  LF+SGLS+ TT E LR AF+ FG++ DAKVVTDR +G SKGF FV Y+T++++ K  
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 99  EEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS 133
             M+ KFLDGWVIF + A+PRE     QPQ+  S
Sbjct: 115 AGMDGKFLDGWVIFAEYARPREQSQSYQPQNNMS 148

[Close]

BLAST of Cucsat.G13693 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-16
Identity = 48/97 (49.48%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 41  KLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREE 100
           KLFI GLS  TT++ L EAFS  GQ+V+A++V DR + RSKGF FVT+++ DEA+KA  E
Sbjct: 35  KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94

Query: 101 MNAKFLDGWVIFVDPAKPRE----------PRPPPQP 128
            N + L+G  IFVD AK ++           R PP P
Sbjct: 95  FNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131

[Close]

BLAST of Cucsat.G13693 vs. ExPASy Swiss-Prot
Match: Q8L440 (Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM1 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.1e-16
Identity = 46/103 (44.66%), Postives = 70/103 (67.96%), Query Frame = 0


Query: 34  SSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDE 93
           S  + + KLFI+GLS  T+++ LR AF  FG+LV+ K++ D+ + RSKG+AF+ Y+T + 
Sbjct: 276 SPPVKTKKLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEA 335

Query: 94  AEKAREEMNAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGI 137
           A  A +EMN K ++GW+I VD AK    +P  Q +S+ S FG+
Sbjct: 336 AGTALKEMNGKIINGWMIVVDVAK---TKPFRQNRSQPS-FGL 374

[Close]

BLAST of Cucsat.G13693 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.5e-15
Identity = 57/132 (43.18%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 10  VLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFSSFGQLVDA 69
           VL  S  S+ SSS   S       SS+    KL++SGLS  TT++ LR+ F  FG L+  
Sbjct: 54  VLISSCLSTDSSSSPPS-------SSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHM 113

Query: 70  KVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPREP-------R 129
            +V D+   R KGFAF+ Y T +EA KA + M+ KFLDG VIFV+ AK R         R
Sbjct: 114 NMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRR 173

Query: 130 PPPQPQSETSEF 135
             P+PQS+   F
Sbjct: 174 DFPKPQSKPRTF 178

[Close]

BLAST of Cucsat.G13693 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.6e-15
Identity = 42/104 (40.38%), Postives = 65/104 (62.50%), Query Frame = 0


Query: 41  KLFISGLSRLTTDEKLREAFSSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREE 100
           +LF++GLS  T+++ LR AF  FG+LV+ K++ D+ + RSKG+AF+ Y+T +    A + 
Sbjct: 296 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKA 355

Query: 101 MNAKFLDGWVIFVDPAKPR-EPRPPPQPQSETSEFGIRTNKTIG 144
           MN + ++GW+I VD AK R   R PP   S  S   +R+    G
Sbjct: 356 MNGQIINGWMIVVDVAKHRSRDRQPPYSASGRSNQVLRSRYHTG 399

[Close]

BLAST of Cucsat.G13693 vs. NCBI nr
Match: XP_031739912.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KAE8649523.1 hypothetical protein Csa_018111 [Cucumis sativus])

HSP 1 Score: 285 bits (729), Expect = 8.48e-97
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 146
           PRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 146

[Close]

BLAST of Cucsat.G13693 vs. NCBI nr
Match: XP_008447620.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 271 bits (694), Expect = 1.78e-91
Identity = 140/146 (95.89%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAFFSTVRRVL+GSS SSSSS ILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF
Sbjct: 1   MAFFSTVRRVLSGSSPSSSSS-ILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           SSFGQLVDAKVVTDRATGRSKGFAFVTYSTI+EAE+AR+EMNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 146
           PRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Cucsat.G13693 vs. NCBI nr
Match: XP_022143719.1 (organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia])

HSP 1 Score: 255 bits (652), Expect = 4.52e-85
Identity = 129/146 (88.36%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAF S+VRRVLNGSSSS++SS IL+SQW  +RLSSTLTSPKLFISGLSRLTTDEKL+EAF
Sbjct: 1   MAFLSSVRRVLNGSSSSAASS-ILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           SSFGQLV+AKV+TDRATGRSKGF FVTY+TI++AEKARE MNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 146
           PRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Cucsat.G13693 vs. NCBI nr
Match: XP_038881167.1 (organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 253 bits (646), Expect = 3.72e-84
Identity = 131/149 (87.92%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAFFSTVRRVLNGSSSSS    ILRSQW AVRLSSTLTSP+LFISGLSRLTTDEKL+EAF
Sbjct: 1   MAFFSTVRRVLNGSSSSS----ILRSQWTAVRLSSTLTSPRLFISGLSRLTTDEKLQEAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           SSFGQLV+AKV+TDR TGRSKGF FV+Y+TI+EAEKAREEMNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SSFGQLVEAKVITDRVTGRSKGFGFVSYNTIEEAEKAREEMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PR---PPPQPQSETSEFGIRTNKTIGWCG 146
           PR   PPPQPQ ETSEFGIRTNKTIGWCG
Sbjct: 121 PREPRPPPQPQPETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Cucsat.G13693 vs. NCBI nr
Match: XP_022972736.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima])

HSP 1 Score: 251 bits (641), Expect = 2.22e-83
Identity = 130/149 (87.25%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAFFSTVRRVLNGSSSSSS   +LRSQW + RLSSTLTSPKLFISGLSRLTTDEKL+EAF
Sbjct: 1   MAFFSTVRRVLNGSSSSSS---VLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           +SFGQLV+AKV+TDRATGRSKGF FVTYSTI+EAEKARE MNAKFLDGWVIFVDPAKPRE
Sbjct: 61  TSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQ---SETSEFGIRTNKTIGWCG 146
           PRPPP PQ   +ETSEFGIRTNKTIGWCG
Sbjct: 121 PRPPPPPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of Cucsat.G13693 vs. ExPASy TrEMBL
Match: A0A1S3BHV3 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490031 PE=4 SV=1)

HSP 1 Score: 271 bits (694), Expect = 8.64e-92
Identity = 140/146 (95.89%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAFFSTVRRVL+GSS SSSSS ILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF
Sbjct: 1   MAFFSTVRRVLSGSSPSSSSS-ILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           SSFGQLVDAKVVTDRATGRSKGFAFVTYSTI+EAE+AR+EMNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 146
           PRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Cucsat.G13693 vs. ExPASy TrEMBL
Match: A0A6J1CQ59 (organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013559 PE=4 SV=1)

HSP 1 Score: 255 bits (652), Expect = 2.19e-85
Identity = 129/146 (88.36%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAF S+VRRVLNGSSSS++SS IL+SQW  +RLSSTLTSPKLFISGLSRLTTDEKL+EAF
Sbjct: 1   MAFLSSVRRVLNGSSSSAASS-ILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           SSFGQLV+AKV+TDRATGRSKGF FVTY+TI++AEKARE MNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SSFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 146
           PRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Cucsat.G13693 vs. ExPASy TrEMBL
Match: A0A6J1I6S8 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471250 PE=4 SV=1)

HSP 1 Score: 251 bits (641), Expect = 1.08e-83
Identity = 130/149 (87.25%), Postives = 138/149 (92.62%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAFFSTVRRVLNGSSSSSS   +LRSQW + RLSSTLTSPKLFISGLSRLTTDEKL+EAF
Sbjct: 1   MAFFSTVRRVLNGSSSSSS---VLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           +SFGQLV+AKV+TDRATGRSKGF FVTYSTI+EAEKARE MNAKFLDGWVIFVDPAKPRE
Sbjct: 61  TSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQ---SETSEFGIRTNKTIGWCG 146
           PRPPP PQ   +ETSEFGIRTNKTIGWCG
Sbjct: 121 PRPPPPPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of Cucsat.G13693 vs. ExPASy TrEMBL
Match: A0A6J1HDN1 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111463207 PE=4 SV=1)

HSP 1 Score: 250 bits (639), Expect = 2.10e-83
Identity = 132/148 (89.19%), Postives = 138/148 (93.24%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAFFSTVRRVLNGSSSSSS   +LRSQW   RLSSTLTSPKLFISGLSRLTTDEKL+EAF
Sbjct: 1   MAFFSTVRRVLNGSSSSSS---VLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           +SFGQLV+AKV+TDRATGRSKGF FVTYSTI+EAEKARE MNAKFLDGWVIFVDPAKPRE
Sbjct: 61  TSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPP-QPQS-ETSEFGIRTNKTIGWCG 146
           PRPPP QPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 PRPPPPQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of Cucsat.G13693 vs. ExPASy TrEMBL
Match: A0A7N2LNA5 (RRM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 228 bits (580), Expect = 2.00e-74
Identity = 113/146 (77.40%), Postives = 130/146 (89.04%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60
           MAF S +RRVL G SS++SS  IL+S + ++R ++TLTSPKLFISGLSRLTTD+KL+EAF
Sbjct: 1   MAFVSGIRRVLGGGSSTASS--ILQSHYTSIRFNTTLTSPKLFISGLSRLTTDQKLQEAF 60

Query: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120
           S FGQLVDAKV+TDRATGRSKGF FV+Y+TI+EAEKARE MNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SPFGQLVDAKVITDRATGRSKGFGFVSYATIEEAEKAREGMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 146
           PRPPPQPQ E SE G RTN+T+GWCG
Sbjct: 121 PRPPPQPQQEPSETGFRTNRTVGWCG 144

The following BLAST results are available for this feature:

BLAST of Cucsat.G13693 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	2.3e-22	55.32	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FFZ6	2.4e-16	49.48	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q8L440	7.1e-16	44.66	Organelle RRM domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FX45	3.5e-15	43.18	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q6YWP9	4.6e-15	40.38	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]

BLAST of Cucsat.G13693 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739912.1	8.48e-97	100.00	organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KAE8...	[more]
XP_008447620.1	1.78e-91	95.89	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]	[more]
XP_022143719.1	4.52e-85	88.36	organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia]	[more]
XP_038881167.1	3.72e-84	87.92	organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida]	[more]
XP_022972736.1	2.22e-83	87.25	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima]	[more]

BLAST of Cucsat.G13693 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BHV3	8.64e-92	95.89	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1CQ59	2.19e-85	88.36	organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia ...	[more]
A0A6J1I6S8	1.08e-83	87.25	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=...	[more]
A0A6J1HDN1	2.10e-83	89.19	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata O...	[more]
A0A7N2LNA5	2.00e-74	77.40	RRM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 41..114 e-value: 5.6E-27 score: 105.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 42..108 e-value: 3.6E-21 score: 74.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 40..118 score: 18.700279
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 16..141 e-value: 6.7E-29 score: 102.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..146
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..146
None	No IPR available	PANTHER	PTHR15241:SF282	GLYCINE-RICH RNA-BINDING PROTEIN 6, MITOCHONDRIAL	coord: 1..146
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 39..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G13693.T1	Cucsat.G13693.T1	mRNA
Cucsat.G13693.T3	Cucsat.G13693.T3	mRNA
Cucsat.G13693.T2	Cucsat.G13693.T2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding