Cucsat.G13612 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G13612
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	CDT1-like protein b
Location	ctg1838: 4420075 .. 4420753 (+)
RNA-Seq Expression	Cucsat.G13612
Synteny	Cucsat.G13612

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGTCTTTGATGAGTGTACCAACTGGAAGAAGCCAGAACTTCATATATCTTTCAATTTTGGTGTCCTAGCTGTAGACAGTAAGGAAAACCATTATACGCAATTGAGGAAGTTGTTTAGGATACAGCTTTCAGAATTTGTGAGTTCCCATCCATAAGTATGCCACCATTTTTCTTCTATGATTTGAAAATGTATTTATTTGTATATGTGTTTACAAATCCTAGAATATGTTGGTTCTCTTCATAGACATTGGCATGAAATGTGAAAATTTATGTGCCCTCTATAGTCATTCTAGTTCTCGCTCTATTTTCAACTCGACATGAAGATTTAAAACAAACTACGTTGAAGTTACTTTTTTTCAAATTTTATAGTCAGAATTGGGAATACATTTGGTGGTATAACAATGAATTGTAGCATTCTGATCATAGAAGTTGTTATCATTAGCATCATGGCCACTTGAGATGGCTTGACTTTTCTCTTTCGTTGACATGCTTTTCTGTATTCAGATTGATGACGTTCCAGCATTCAATTTCAGAACCCAAGATCTTCTCTCAAAAACCAAGACGTTATCTTATGTCAAGACATCAATTGAGCAACTAGCGCCTGGGCAACCAATGCCATCAGCAAAAGGCATTTCCTCTAATCATAATTCAGAAGAAAATCAAGGTTTCCCAATAATTA

Coding sequence (CDS)

GTCTTTGATGAGTGTACCAACTGGAAGAAGCCAGAACTTCATATATCTTTCAATTTTGGTGTCCTAGCTGTAGACAGTAAGGAAAACCATTATACGCAATTGAGGAAGTTGTTTAGGATACAGCTTTCAGAATTTATTGATGACGTTCCAGCATTCAATTTCAGAACCCAAGATCTTCTCTCAAAAACCAAGACGTTATCTTATGTCAAGACATCAATTGAGCAACTAGCGCCTGGGCAACCAATGCCATCAGCAAAAGGCATTTCCTCTAATCATAATTCAGAAGAAAATCAAGGTTTCCCAATAATT

Protein sequence

VFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEFIDDVPAFNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFPII

Homology

[Close]

BLAST of Cucsat.G13612 vs. NCBI nr
Match: XP_031739146.1 (CDT1-like protein a, chloroplastic [Cucumis sativus])

HSP 1 Score: 215 bits (547), Expect = 1.06e-67
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   VFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEFIDDVPAFNFRTQDLL 60
           VFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEFIDDVPAFNFRTQDLL
Sbjct: 186 VFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEFIDDVPAFNFRTQDLL 245

Query: 61  SKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFPII 103
           SKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFPII
Sbjct: 246 SKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFPII 288

[Close]

BLAST of Cucsat.G13612 vs. NCBI nr
Match: XP_031744901.1 (CDT1-like protein a, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 130 bits (327), Expect = 9.71e-36
Identity = 69/115 (60.00%), Postives = 87/115 (75.65%), Query Frame = 0


Query: 1   VFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEFI------DDVPA--- 60
           V+DE T+  KP+LHISFNFGVL  ++KE+ Y QLRKLFR +LSEF+      DDVP    
Sbjct: 44  VYDERTSCMKPDLHISFNFGVL--ENKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLL 103

Query: 61  ---FNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFPII 103
              FNFR+Q++++K+  LS +KTSIEQLAP QPMPS +GIS NH+SEENQGF I+
Sbjct: 104 PNPFNFRSQEVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIV 156

[Close]

BLAST of Cucsat.G13612 vs. NCBI nr
Match: XP_031744900.1 (uncharacterized protein LOC105436135 isoform X1 [Cucumis sativus])

HSP 1 Score: 130 bits (327), Expect = 1.47e-35
Identity = 69/115 (60.00%), Postives = 87/115 (75.65%), Query Frame = 0


Query: 1   VFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEFI------DDVPA--- 60
           V+DE T+  KP+LHISFNFGVL  ++KE+ Y QLRKLFR +LSEF+      DDVP    
Sbjct: 59  VYDERTSCMKPDLHISFNFGVL--ENKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLL 118

Query: 61  ---FNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFPII 103
              FNFR+Q++++K+  LS +KTSIEQLAP QPMPS +GIS NH+SEENQGF I+
Sbjct: 119 PNPFNFRSQEVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIV 171

[Close]

BLAST of Cucsat.G13612 vs. NCBI nr
Match: KAE8646176.1 (hypothetical protein Csa_016825 [Cucumis sativus])

HSP 1 Score: 130 bits (327), Expect = 1.06e-32
Identity = 69/115 (60.00%), Postives = 87/115 (75.65%), Query Frame = 0


Query: 1   VFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEFI------DDVPA--- 60
           V+DE T+  KP+LHISFNFGVL  ++KE+ Y QLRKLFR +LSEF+      DDVP    
Sbjct: 185 VYDERTSCMKPDLHISFNFGVL--ENKEDQYMQLRKLFRARLSEFVSSHRESDDVPKDLL 244

Query: 61  ---FNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFPII 103
              FNFR+Q++++K+  LS +KTSIEQLAP QPMPS +GIS NH+SEENQGF I+
Sbjct: 245 PNPFNFRSQEVVAKSNLLSPIKTSIEQLAPEQPMPSIEGISFNHHSEENQGFRIV 297

[Close]

BLAST of Cucsat.G13612 vs. NCBI nr
Match: XP_008447443.1 (PREDICTED: CDT1-like protein a, chloroplastic [Cucumis melo] >KAA0038091.1 CDT1-like protein a [Cucumis melo var. makuwa] >TYK20516.1 CDT1-like protein a [Cucumis melo var. makuwa])

HSP 1 Score: 129 bits (325), Expect = 1.69e-32
Identity = 72/115 (62.61%), Postives = 83/115 (72.17%), Query Frame = 0


Query: 1   VFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEF------IDDVPA--- 60
           VFDE T+  KP+LHISFNF +L  +SKE+ Y QLRKLFR +LSEF      IDDVP    
Sbjct: 182 VFDERTSCMKPDLHISFNFDIL--ESKEDQYMQLRKLFRTRLSEFASSHPEIDDVPKDLL 241

Query: 61  ---FNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFPII 103
              FNFR+Q+L  KT  LS VKTSIEQL P QPMPSA+G+ SNH+ EENQGF II
Sbjct: 242 PNPFNFRSQNLFPKTNPLSSVKTSIEQLGPEQPMPSAEGLLSNHHLEENQGFRII 294

[Close]

BLAST of Cucsat.G13612 vs. ExPASy TrEMBL
Match: A0A5A7T8X4 (CDT1-like protein a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00930 PE=3 SV=1)

HSP 1 Score: 129 bits (325), Expect = 8.17e-33
Identity = 72/115 (62.61%), Postives = 83/115 (72.17%), Query Frame = 0


Query: 1   VFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEF------IDDVPA--- 60
           VFDE T+  KP+LHISFNF +L  +SKE+ Y QLRKLFR +LSEF      IDDVP    
Sbjct: 182 VFDERTSCMKPDLHISFNFDIL--ESKEDQYMQLRKLFRTRLSEFASSHPEIDDVPKDLL 241

Query: 61  ---FNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFPII 103
              FNFR+Q+L  KT  LS VKTSIEQL P QPMPSA+G+ SNH+ EENQGF II
Sbjct: 242 PNPFNFRSQNLFPKTNPLSSVKTSIEQLGPEQPMPSAEGLLSNHHLEENQGFRII 294

[Close]

BLAST of Cucsat.G13612 vs. ExPASy TrEMBL
Match: A0A1S3BGW9 (CDT1-like protein a, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489888 PE=3 SV=1)

HSP 1 Score: 129 bits (325), Expect = 8.17e-33
Identity = 72/115 (62.61%), Postives = 83/115 (72.17%), Query Frame = 0


Query: 1   VFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEF------IDDVPA--- 60
           VFDE T+  KP+LHISFNF +L  +SKE+ Y QLRKLFR +LSEF      IDDVP    
Sbjct: 182 VFDERTSCMKPDLHISFNFDIL--ESKEDQYMQLRKLFRTRLSEFASSHPEIDDVPKDLL 241

Query: 61  ---FNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFPII 103
              FNFR+Q+L  KT  LS VKTSIEQL P QPMPSA+G+ SNH+ EENQGF II
Sbjct: 242 PNPFNFRSQNLFPKTNPLSSVKTSIEQLGPEQPMPSAEGLLSNHHLEENQGFRII 294

[Close]

BLAST of Cucsat.G13612 vs. ExPASy TrEMBL
Match: A0A5D3BZJ0 (CDT1-like protein b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G00950 PE=3 SV=1)

HSP 1 Score: 126 bits (316), Expect = 1.53e-31
Identity = 68/115 (59.13%), Postives = 84/115 (73.04%), Query Frame = 0


Query: 1   VFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEFID------DVPA--- 60
           V+DE T   KP+LHISFNF VL  ++KE+ Y QLRKLFR +LSEF+       DVP    
Sbjct: 180 VYDEQTCCMKPDLHISFNFAVL--ENKEDQYMQLRKLFRARLSEFVSSYPETHDVPKDLL 239

Query: 61  ---FNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFPII 103
              FNFR+QDL++K+ +LS +KTSIEQLAP QPMPS +GI  NH+SEENQGF I+
Sbjct: 240 PNPFNFRSQDLVAKSNSLSSIKTSIEQLAPEQPMPSIEGICFNHHSEENQGFRIV 292

[Close]

BLAST of Cucsat.G13612 vs. ExPASy TrEMBL
Match: A0A1S3CEP6 (CDT1-like protein b OS=Cucumis melo OX=3656 GN=LOC103500097 PE=3 SV=1)

HSP 1 Score: 126 bits (316), Expect = 1.53e-31
Identity = 68/115 (59.13%), Postives = 84/115 (73.04%), Query Frame = 0


Query: 1   VFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEFID------DVPA--- 60
           V+DE T   KP+LHISFNF VL  ++KE+ Y QLRKLFR +LSEF+       DVP    
Sbjct: 180 VYDEQTCCMKPDLHISFNFAVL--ENKEDQYMQLRKLFRARLSEFVSSYPETHDVPKDLL 239

Query: 61  ---FNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFPII 103
              FNFR+QDL++K+ +LS +KTSIEQLAP QPMPS +GI  NH+SEENQGF I+
Sbjct: 240 PNPFNFRSQDLVAKSNSLSSIKTSIEQLAPEQPMPSIEGICFNHHSEENQGFRIV 292

[Close]

BLAST of Cucsat.G13612 vs. ExPASy TrEMBL
Match: A0A5D3DKW1 (CDT1-like protein b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G00410 PE=3 SV=1)

HSP 1 Score: 125 bits (315), Expect = 2.14e-31
Identity = 67/115 (58.26%), Postives = 86/115 (74.78%), Query Frame = 0


Query: 1   VFDECTNWKKPELHISFNFGVLAVDSKENHYTQLRKLFRIQLSEFI------DDVPA--- 60
           V+DE T   KP+LHISFNFGV   +++E+ Y QLRKLFR +LSEF+      DDVP    
Sbjct: 184 VYDERTCCMKPDLHISFNFGV--PENQEDQYMQLRKLFRARLSEFVSSYPETDDVPKDLL 243

Query: 61  ---FNFRTQDLLSKTKTLSYVKTSIEQLAPGQPMPSAKGISSNHNSEENQGFPII 103
              FNFR+QDL++K+ +LS +KTSIEQLAP QPMPS +GIS NH+SEE+QGF ++
Sbjct: 244 PNPFNFRSQDLVAKSNSLSSIKTSIEQLAPEQPMPSIEGISFNHHSEEHQGFRMV 296

The following BLAST results are available for this feature:

BLAST of Cucsat.G13612 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G13612 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739146.1	1.06e-67	100.00	CDT1-like protein a, chloroplastic [Cucumis sativus]	[more]
XP_031744901.1	9.71e-36	60.00	CDT1-like protein a, chloroplastic isoform X2 [Cucumis sativus]	[more]
XP_031744900.1	1.47e-35	60.00	uncharacterized protein LOC105436135 isoform X1 [Cucumis sativus]	[more]
KAE8646176.1	1.06e-32	60.00	hypothetical protein Csa_016825 [Cucumis sativus]	[more]
XP_008447443.1	1.69e-32	62.61	PREDICTED: CDT1-like protein a, chloroplastic [Cucumis melo] >KAA0038091.1 CDT1-...	[more]

BLAST of Cucsat.G13612 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T8X4	8.17e-33	62.61	CDT1-like protein a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G...	[more]
A0A1S3BGW9	8.17e-33	62.61	CDT1-like protein a, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489888 PE=3 ...	[more]
A0A5D3BZJ0	1.53e-31	59.13	CDT1-like protein b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold675G...	[more]
A0A1S3CEP6	1.53e-31	59.13	CDT1-like protein b OS=Cucumis melo OX=3656 GN=LOC103500097 PE=3 SV=1	[more]
A0A5D3DKW1	2.14e-31	58.26	CDT1-like protein b OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27G0...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G13612.T1	Cucsat.G13612.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000076	DNA replication checkpoint signaling
biological_process	GO:0071163	DNA replication preinitiation complex assembly
biological_process	GO:0000278	mitotic cell cycle
biological_process	GO:0030174	regulation of DNA-dependent DNA replication initiation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0070182	DNA polymerase binding