Cucsat.G12138 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G12138
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	nucleolin 1 isoform X1
Location	ctg1837: 938709 .. 940531 (-)
RNA-Seq Expression	Cucsat.G12138
Synteny	Cucsat.G12138

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTAAACCCTTCCGTTTCTCAAATTTCATTTTCATTTTTTGTTTCTCGTTCATCTCAAATCCCTCTCCCTCAGGCCTCAGCCATGTGCTCTGATAAAATCCGTTCTGGGGTTTAATTTCCATCCGCTTCCATTAGTTAATCGCTCCGTCGAGTTTTCACAAGGAGTCGGTGTGGAACCAGCTAGGGTTCATGGAGGCTCCTTATTTGAGGGTTTCAATATCAATTGAACTCCGTTGTTAGTGAGCCTGTTTCTTCTTCTGTATATTCAAGTTTCGTGAAATGAACTCGTCGGAGATGGGGAGTGAGGATCGTGTCGATGATCGTACGTTCAAGGTTGATTTTACTGGCGACGGAATGGCGAAGCTCAGAGAGAGGATAAAGCTGAAGATGAAGGAATTCATGGGCGATTATACTGACGACACTCTCGTGGTACGGACTACTCTAGCCTTTTAACATTCACGTACCTGAGTGGTTTTTGCCAACCAATGAGATGTCTGGGTGTCTTACAATTTCTCTTAGGTTATTCATGTGGAGGCCATCATCTTCTTCTTAACTGGTTGTTGAGGAATTTGTTTCGTTAAAGAAATGGGAATTTAGTATTCGCGGGTTGTTATATATTTGCTATTGCCCAATGGAAATAACATATAGTTCTGATTCTTTTATCTGTAAGTAATTACGTGCCTTAGGGGAAGTTTCTCTTATCTACTAAGGAATTCGCCCAAGGTTTATGGTTGATGTTAATGAGATGTAATCCAACTCAATGCCCATATATTGTTCTTCATCCAAAGCAAACTGCATCTTATAGCCTATTTAAAAATTTGGTTAGCCGTTATACTGTTTATCTGTCCGCCCCTCTTTCAGAAAACCTCTCTGTGCTAGGTGAACTTGCAACTGAGATAATTCCTTTAGCCTTTGATTGGCGGCTGTTCCCATTTCCCATCGATAAGATATAAGTACATTGAATTATTGAAATGTATAAAAAAGGAAGATTCTAATTAGCAAACAAATATTAGTGAAGTTACAGAATAGCATATAATTATAACCCAAATGTGATGATTAAAATAATGTCTCCTAAATCAGCTAAGAAGAGTTGTTACTAACCTTGTAGAGGCAAGAGATTGAGATTGATTGATTGGATGAAAACATGTCGTGCTCTTTGTATTTGGACTAGACTTTTCTGTTGAGGGTGTATCGATAATATTATTGTGAAGAAAGATCTTGGAGTGCTTGTAATATCTTACATGAGGGTGTTTCAAGAGTTGTAAAAGAATTTAGTGGCAAATCCATTGTGTTTTTTTATCTACTCCCAAAATATAAGATAGCTTTTATAACTTTCTCAACCCTAAAGTTAGCTTCTATCTTAACCAAATCGGTCTTGGGCGGACTTAGGTTGGGATCTGATCTGAAGTGGTTGGCTTAAATTTTACCACCTCTTTCTTTGTGTATGGATACTGTAGAAGGCAGGAATTGCCTTTTGCATGTGTGTGGAAAGAGATATCGTTATACTCTCCTTCCCTTCTTGATATGTCTCCTCCTGCATACTATGTGATTTGTATCTTCACATCCAAAAAAATTCTTTCCAAATTGGATATCTGAGTTGGTATTTGAGATTAGTTTTAGAATATTGGTAGCTTAAAGTAGGGAAAAGTTTTGCAAGTGGTCTAGAGCTTTGGGATCAACACGAACCTCAGCTTTTTTGAAGGTTTCATCTTTTCAGCAAGCTTTACATCTTCTTTAATTTGCAAAGGTTAAGTGGAGTTCCACCAACTTTTGAAAGTCTTTTGAGAATTGTTGTTCTTGAGCCTCATATTTATATATTTTAAGGACAGGATCCCGTTTGATGCCAGAAGATTCTAGAAGGGTTAATTGGTTGTTAGAGGAGGTGTTTTAACTCTAGAATTTGAGATTTTGAGGAACCAATCATGGGGTACTAGAATTTACTAACGATGAACAAAAGAAGCCATGTTGGATCAAGTTAACTTGGCTCTTCTACAAGGGAAGGATATCACTTTTGGCAGGGCTTTTGGAGATCAATTTTTTCGTCTCTTCTAGAAGAAGCAAAAAATAGCAGAGGAGAACATAATGCTTTAAGAGAAAGCTCAGCCATAACAAGGTTCCCAAGATTTTCCAATTTTCTCAAAAAAGAAAACTTGACTGGGGCAACTTGACCAACATTTTTGTTTTATCACTGAGCTATAACTGTTATGGAAGCCATGGAATCCAATTTTTGAAGTCTTGTGAAATCTTCCATGGATGAAAAAGTGCTTACGGAAGAATCAAGACTCCATTAGTTCAGGGACACATAATTTTTATCCATCTTTCATATGAAAGGGATGATAAATTCCTAGAATGCTTGATGGAGTCCAGCCTTCTCTTAGGCGGAGGAGTCTAATTTGGTTCATTCTGCTTGATCTGAGGATTGCTGTATTACATGGACTGGTTGTGGCTATTAGCTCTTGGAGAGTCGTGGGATTTCTGTACTAGTTGTTCCTTTAGAGTTTTCTTCAAACCACACTGGAGACATTCTTCTTTTGAAGATTGCATTTCCTTCGAACTCATTCTTCCAATTTTCATGTTCTTAAATCCCTTCCTTCTCAGAAAAAGTTCTATGAACATGTTTTCATCTTTTTGGAATTTGAGAGGCTTTTACTTGCTGTCTTGTGCACTTCTGAGTCATCCTAAGTAGAAGGCATTATTTAATATAATGGACATCAATGGGATCCAGTGGAGTTAGATATCTCCACAAAAAGTACCAATTTTTTTTTTTTTTTGAAATCTTAGAGCTCTTTACTTGCTGTCTAGTGCACTCTTGAGTCACGTTAAATAAAAGATGTTATAATTTACCGTAGGTATCTTTGAGGTATTTGAAGGCTTTCAAATGCTGTGAATACTAGGTGAATTAGTTCATTCTGTTGTCTTGTTGCTAGATAAAGAAAGGTAATTGGAAAACGAGTTTATAATTGTCTGGGGAACTTTTTCCTCTATTTCTGGTTCCCCTGCCTTTACCATTCGTTTTCTTTCAAAAATTGTTTTGTGGCCTCTATTCTCTTGCCATTTGGGAGTTCCTCGTCTGTCTCTCTTGGACTCAGTTGTTCCCCATCTGATACAGAAGCTATCTGCCATTTGGGAGTTCCTCGTCTGTCTCTTGGACTCTTGGAATCTTCAGATATTACTGCTCTTCTAACCTTAATTGGTGATTTTGTTGTTTGGGAGGGGAGAAGCTATCTTCGTTTGTGTCGCCTATTCCCTTTGGGTGGGTTTTCCTGTAGTTCTTCGTTTTATTGTCAGCTGAATTCTATGTCTTTAAGTCCTACTACCTTCTCACTTTTTTGGAAGATCATTGTCACAAAGAAGGCTAACTTTTTGTGATGTAGATAGCTTAGTATGGTTACTATTATGGATCGTGTTTGTAAGTTTGTGCCTAAAATCGGGGCCGTCTGGCCCAACGTTACAAATGGGACTACCTGAGGACTTGGATCATCTTCACGTGGTCCTGTTTGTTTGCAAGATTGTTTTAGAGCAGCATTTTTGAGTCATTCTTCTTCAGGTTTGCTTAGTGGAGAACTTGCAGTTCCATGTGCGAGGAGTTGCTCCCCCTGTCCTCTTTTCGTGAAAAAGGGTCTCTTGTTGTGGTTTGCATGTCTATTATGCTATTGTTTGGAGAGTTTGGATGGAAAGGAATAATACAATTTTAAGTAGAGTGGAGCAATCTGTGGGCGAGTTGTGGTCCCTATTAGGTTGCATAGACTTTCAAATGCTGCAAAAACTTTTTGTTTGTAAAGACTTTTGCAATTATCCTTCTTGTTTCATTTTGTTTGACTGGAGCCCACTTAGAGTAGTTGGGATCTGATCTGGGGTTTTGTTGTATTTTTCATGTATTCTTACATTTTTGTCAATAAAATCTCGGGTTTTTTATATTAATTAAAAAAAGTAGTCCATAGAGCTGAATGCTTGGAAAATTATTTTGAGATGTTGGCATTGTTTAGCCTTTGAATATCTTTTTTTCCATTCTCAGGCAGTGCTGTATGAGATTGTGGAAACTTTCTTATCTGCGTTTCTATTTAATTTGGCTTTATACTTCTGTACTTTTTATATACTTGTTTGTTTCTAAAATTGTGTCCATGTTTCAATTTTTCTATATTTATCATAACATGGTTTGAATTTACTTCACAAACTGGGATTTAGAGCGTTTGTTTGAAGAAATCAGATTTGATGAAATATAATGAATGTTATTTGGTAGGAATACGTGATTGTCTTGTTGAGGAACGGCAGGCGCAGAGAAGAAGCACAGAATGAACTTAATGTCTTTTTGGCAGACGATAGTCATTCATTTGTATCTTGGTAATTTGATTCTCATCCCTCTTGTTCGTATTTGTAATTTGTGTAGTAAGTTGTGTTGATTCATTCTTGCAGTCAGTTGACTAATTGTTTTAAGCTTCATTTCAATAGGTTGTGGGACCATCTGGCTTCAAGTATGGATTTATATGTGGAGCCGCCTGCTAAAGCTTCTGCCAATGAGGTGCCCACACAAAAGTCTCCAGTAGCAGAACCAGATACAAGAAATAATTCTCACAATCTGGAGTCTGATTCTGAAAGAGGGAAGACTGAAAAATTGTCTAGCAGACGACGTACTAGGGAATGGAGAGGAATTGCTAATGAGGAAACCCGTGTAGTTCCAAGATCTGAAGTTAGTCGTGTCAAGCATTCTTCTCCTGAACAAGTTCCTGGTCATAGGAAAAGGAGCCGGCCTGACGATCATCAAGGCACTGAGGTACTTTTCTAATTTTGTACTAGCCACAGTTAACTGGGTTTTAAAATGTGAACTTTTTCTGGGAGGGGGAACCACCGGCCCCTAGGCCATATTATCTTCCTGGTTGTGAATGTATTCCTTTTGTTGTTTCCTATTAAAGTGAAAATTGATTTTTTTTTCCTTTTCCTTTTTGATAAAGCTAAATTTAAATTGGTGAAAGGCAATGGGTAGTGGAGGGTTAGCTGAACAATTTCTTGTTGTTTCTCAGTTTTCAATACAATAGATTTGAAATCTTTAAAACCCACAATTTTTTGTTGAGAACTGCATATCTTTATGTATTTAAAATTTTTAGTATCTCAGTTTAAATAAAGTCCTCAATTATGGTGTCTAAACCTATCTCCTTCATGTGCATGTCTTGTCTTTTTTCCGTCTTTGAACGAACTTTTAATTTCTTCTCCTTGCCATGCCGATATGCTTATGTTTTTCTTAAATCCAAGTTTTTCTTAATGCAATACAACTTTATTGTAATGCACCTTTAGGTGCCTTGGGAGCTTTCTCCTTCCATTTCGTTTATCAATGAAATTGTTTCCCAATCCAAAAGAAAGGTATGCTTGATTAAATTTTACAATTGCTGTACTAAACTACCTTAGTTTCTGGTACTTTTAGTAATTGAAAATAACTTAATCCGGAATATTGGATGGTTTATTGATATGCATTTATTCTAATGGGAAATAAATTCTCACGTATCTTGTTTTACAGAGGGAAGCTGCCTTTCAGGTAAGCATTGCTGCCCCTCGACGGCTGCTCCAGTTTGCAATGCGAGATGCTGTGGCCACCACGAGGCCCTCTAATGCATCTAAGGAGCCCCATTCAAAACGTCTTCGTTCAGTAGTTTCTGCATCCAATAGTGACACAACTAATCGTCCTAGGAGGCTTCAATCTGTTGCAAAAGTTCCAAATCCAATGGCAACTGTCATCAAGGCTGTGACGGAGGCATCTGAAGATGTGGTCAGAGTTAAATCCTCCAGTGTTTTTGACCGACTTGGTCGTCAATCTCGTGATATGGATTTAACAGAGTCTAGTGGCCGACCTTCAGAATATGGAGCAACTTTTGTAGAGAACGATGAATATGGGGATATGAATCATTCAGAGGATCGACCATACTCAGCTACCTATCTTGAGAGAGGCAATTATATTGGGAAATATTCTCGTGATGAGCCCATGTTTGAACCTGAAACTGGATTAGCATCAGATTCTACATCTGAAAATGAAGATGTTAATATTCAGGGCCACAGAGTATTTGATGATTCTTGGACTGCCGAATCAGGAGTAAGAAAGGGAAGCAATTTACGGACTGTGGCATTCAGGGCAGTTGAGAATTCTGATGATGAACGTGTGGCACAATATACACAGAAGGATCAACCTTCGTTAGCTGCAAATTCCTCACGTGACATTGTAAATATCTCTGTGAATGTTAATACTTGGAAACCACCTCACTATCAGGACCAAGGGCAAATTCCTGAACTTGCTGGTCAAAAGTTTTTGCAGGAGAGTGAGTTACAGGGTACCAGATCGGCTGTGCAAGTTATGGAGAATGGCGAGCCAGTGACCCTTGTTAACCAACGGAAAACACCAGCATCTAACCTTCAAGAAGAGTTCCAGAAACCTCCTTTATCTGCTAATGGTGAGCTCCCTTTTCTGGTGTCTGGCTTTCTGTTTAAATAATAGTTTCCTTGCACGACTCTTTTGTTTATCTCTTTCTCGTTCTATTTTTCCCGTATTTGATCATCAATAATCTGTTTGGGCTCATAATTTATTATTCCCTAGTTAGTAATTCATTTTAAGTAACTTTCTCATGTTACCTAATGCAGGCCAATTTGCTGGCACTCGTCCTTTAGAGGAAGCTGATGCTCGAACCATTTTTGTGAGCAATGTAAGAAGTCACTCATTTTTTGCTTGTCTGAAGAAACTGGCAACTATATACCAACCATCTTACGTTGATTTTTTACATACAGGTTCACTTTGCTGCAACGAAGGATAGCCTGTCTAGGCATTTTAACAAGTTTGGAGAAGTTTTAAAAGTCATCATAGTAACCGATGCAACCACTGGGCAACCCAAAGGGTGAGGTGTTTCATTTCTTTATTGTACCTCAGCTATCTTTAATCTCTTTTTGTTTCCTCTACTGGAGACTACAAAGTTTCCTATGTTACGTTTTAATAAATTGAGCATGTGATTGGAGCAGGTCAGCTTATGTGGAGTTCATGAGAAAAGAATCTGCAGAGAATGCGTTGTCTCTTGATGGGACCTCGTTTATGTCTAGGATTCTAAAGGTATCCGTCATATTTTTAACATTTTTCTTTGTAGTATGAAGCATTACTCCAAAAAGAAGTGTTGGCAAACTTAACCTTTGTTTTTTTTCCTGCTTTTTCTTTACTTCAAGTTAGCATTCGTACCTTTAATATGCTCTTCTTTTTTTGGTTAGGAAGTTGTGTGGGAACCTGACATTCTTTCTTTTTTAAAAAAATGGATTTTTGTTCAAGGTTTTGGTTGCTTTTCGCATAATCATTGAATTTTTGCTGTTGTTTCCATACCTAACTAAGCAGTGAGCAAAAGTTAAATAAAGTTTCTCGTAAATCTTAAAATGAAAATGGATCTTGAAGCAAACATAAAAGATGTAATTTTTTTCACTTTTGGGCTTTGGTCAACTTGTTTCAACAAGTTTCTTCCGCTGGTATTATTATTTGAACATCTTAATCGTGATGCAAAAACCATGCCACGTGACAACACAACTAGCATGATATGTTTTAGTCAAGTAGCGCACATGTATCAGATTGATTAGAACGAACATTTTGTTGAGGTGTCTGCTGCATTATGTATGTAGTCAACAAATGAAGCTGCAAGTTTGATTGATTAGTCAATTGCAGGTCGTAAGGAAAAATGCTTCACAATTAGAAGGTGCTTCAACTGTTATCTGGCCTCGTGCTGTGCGAGGCTCGCCGTTTCCTACTTCGAGATTTACCAGAGCTCCATTCATGAGGGGTGTCCCTGGTGGATTTAGGGCTCGTCCCCCGATGAAACTCAGGGCCAGGAGCATGCAGTGGAAGCGTGATAATCAGACCACAACTGCTGACAATGGTGCATCTCTCTCTGGTAATTCTATTCCCTCACCTGGTGCTCGTAGTCTCACCTACGTTCGAACAGAACCTAAGCCAGTGGACAAGTAGGAACCACTCGATTGTGAGAAAATTATTTTGCGGAAAGAAAATCACGCAGGTTCTCCCAAAATTTGTTTGTGTTTTGGTGATTCATGATTTTTTGTGCATCAGTGGAGGAGTTTGAGAAAGAAGACTCCAAGTGGGGAAGTTTTAGCAGCAGTTTGTAGGAGGGTTTTTTTTTGTTTTCCTTTTTGTTTCCATTGGGGAATGGAAATTGGTGAGTTTTATAGGTAGGAAGAAACTGATGATGGCGGTTCGGATAAATTCATAATTTTTCTCCCCCTTCCAATTCAGAAATTCTTATTCAGCTTCTAGATTAAAGTTTGTGAATAGAGTAAGAATAGAGACCTTTTCTTTTACTTTTTTTCTTCTTCTTTTTTTTTTCCCCCTTTCATTTTGTTTTAAGAGATATTGTGATATTTTGTAACTTTTATTAATGTTGTGACAGAGGAGAGAAGGAAAAGAGGAAGAATACGAGTTATATGAAAAGAAAAAAATGAATAAATCTACTTAGTTTGTATATCTGTATGTCTTCTTTGTTCATGTTTTTGTATTGGCAGGACCTTCCA

Coding sequence (CDS)

ATGAACTCGTCGGAGATGGGGAGTGAGGATCGTGTCGATGATCGTACGTTCAAGGTTGATTTTACTGGCGACGGAATGGCGAAGCTCAGAGAGAGGATAAAGCTGAAGATGAAGGAATTCATGGGCGATTATACTGACGACACTCTCGTGGAATACGTGATTGTCTTGTTGAGGAACGGCAGGCGCAGAGAAGAAGCACAGAATGAACTTAATGTCTTTTTGGCAGACGATAGTCATTCATTTGTATCTTGGTTGTGGGACCATCTGGCTTCAAGTATGGATTTATATGTGGAGCCGCCTGCTAAAGCTTCTGCCAATGAGGTGCCCACACAAAAGTCTCCAGTAGCAGAACCAGATACAAGAAATAATTCTCACAATCTGGAGTCTGATTCTGAAAGAGGGAAGACTGAAAAATTGTCTAGCAGACGACGTACTAGGGAATGGAGAGGAATTGCTAATGAGGAAACCCGTGTAGTTCCAAGATCTGAAGTTAGTCGTGTCAAGCATTCTTCTCCTGAACAAGTTCCTGGTCATAGGAAAAGGAGCCGGCCTGACGATCATCAAGGCACTGAGAGGGAAGCTGCCTTTCAGGTAAGCATTGCTGCCCCTCGACGGCTGCTCCAGTTTGCAATGCGAGATGCTGTGGCCACCACGAGGCCCTCTAATGCATCTAAGGAGCCCCATTCAAAACGTCTTCGTTCAGTAGTTTCTGCATCCAATAGTGACACAACTAATCGTCCTAGGAGGCTTCAATCTGTTGCAAAAGTTCCAAATCCAATGGCAACTGTCATCAAGGCTGTGACGGAGGCATCTGAAGATGTGGTCAGAGTTAAATCCTCCAGTGTTTTTGACCGACTTGGTCGTCAATCTCGTGATATGGATTTAACAGAGTCTAGTGGCCGACCTTCAGAATATGGAGCAACTTTTGTAGAGAACGATGAATATGGGGATATGAATCATTCAGAGGATCGACCATACTCAGCTACCTATCTTGAGAGAGGCAATTATATTGGGAAATATTCTCGTGATGAGCCCATGTTTGAACCTGAAACTGGATTAGCATCAGATTCTACATCTGAAAATGAAGATGTTAATATTCAGGGCCACAGAGTATTTGATGATTCTTGGACTGCCGAATCAGGAGTAAGAAAGGGAAGCAATTTACGGACTGTGGCATTCAGGGCAGTTGAGAATTCTGATGATGAACGTGTGGCACAATATACACAGAAGGATCAACCTTCGTTAGCTGCAAATTCCTCACGTGACATTGAGAGTGAGTTACAGGGTACCAGATCGGCTGTGCAAGTTATGGAGAATGGCGAGCCAGTGACCCTTGTTAACCAACGGAAAACACCAGCATCTAACCTTCAAGAAGAGTTCCAGAAACCTCCTTTATCTGCTAATGGCCAATTTGCTGGCACTCGTCCTTTAGAGGAAGCTGATGCTCGAACCATTTTTGTGAGCAATGTTCACTTTGCTGCAACGAAGGATAGCCTGTCTAGGCATTTTAACAAGTTTGGAGAAGTTTTAAAAGTCATCATAGTAACCGATGCAACCACTGGGCAACCCAAAGGGTCAGCTTATGTGGAGTTCATGAGAAAAGAATCTGCAGAGAATGCGTTGTCTCTTGATGGGACCTCGTTTATGTCTAGGATTCTAAAGGTCGTAAGGAAAAATGCTTCACAATTAGAAGGTGCTTCAACTGTTATCTGGCCTCGTGCTGTGCGAGGCTCGCCGTTTCCTACTTCGAGATTTACCAGAGCTCCATTCATGAGGGGTGTCCCTGGTGGATTTAGGGCTCGTCCCCCGATGAAACTCAGGGCCAGGAGCATGCAGTGGAAGCGTGATAATCAGACCACAACTGCTGACAATGGTGCATCTCTCTCTGGTAATTCTATTCCCTCACCTGGTGCTCGTAGTCTCACCTACGTTCGAACAGAACCTAAGCCAGTGGACAAGTAG

Protein sequence

MNSSEMGSEDRVDDRTFKVDFTGDGMAKLRERIKLKMKEFMGDYTDDTLVEYVIVLLRNGRRREEAQNELNVFLADDSHSFVSWLWDHLASSMDLYVEPPAKASANEVPTQKSPVAEPDTRNNSHNLESDSERGKTEKLSSRRRTREWRGIANEETRVVPRSEVSRVKHSSPEQVPGHRKRSRPDDHQGTEREAAFQVSIAAPRRLLQFAMRDAVATTRPSNASKEPHSKRLRSVVSASNSDTTNRPRRLQSVAKVPNPMATVIKAVTEASEDVVRVKSSSVFDRLGRQSRDMDLTESSGRPSEYGATFVENDEYGDMNHSEDRPYSATYLERGNYIGKYSRDEPMFEPETGLASDSTSENEDVNIQGHRVFDDSWTAESGVRKGSNLRTVAFRAVENSDDERVAQYTQKDQPSLAANSSRDIESELQGTRSAVQVMENGEPVTLVNQRKTPASNLQEEFQKPPLSANGQFAGTRPLEEADARTIFVSNVHFAATKDSLSRHFNKFGEVLKVIIVTDATTGQPKGSAYVEFMRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFMRGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKPVDK

Homology

[Close]

BLAST of Cucsat.G12138 vs. NCBI nr
Match: XP_011651785.1 (nucleolin 1 isoform X3 [Cucumis sativus] >KGN58820.2 hypothetical protein Csa_001137 [Cucumis sativus])

HSP 1 Score: 243 bits (621), Expect = 1.26e-74
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFM 60
           MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFM
Sbjct: 532 MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFM 591

Query: 61  RGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKPV 120
           RGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKPV
Sbjct: 592 RGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKPV 651

Query: 121 DK 122
           DK
Sbjct: 652 DK 653

[Close]

BLAST of Cucsat.G12138 vs. NCBI nr
Match: XP_011651784.1 (nucleolin 1 isoform X2 [Cucumis sativus])

HSP 1 Score: 243 bits (621), Expect = 1.34e-74
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFM 60
           MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFM
Sbjct: 535 MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFM 594

Query: 61  RGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKPV 120
           RGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKPV
Sbjct: 595 RGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKPV 654

Query: 121 DK 122
           DK
Sbjct: 655 DK 656

[Close]

BLAST of Cucsat.G12138 vs. NCBI nr
Match: XP_011651783.1 (nucleolin 1 isoform X1 [Cucumis sativus])

HSP 1 Score: 243 bits (621), Expect = 2.29e-74
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFM 60
           MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFM
Sbjct: 563 MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFM 622

Query: 61  RGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKPV 120
           RGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKPV
Sbjct: 623 RGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKPV 682

Query: 121 DK 122
           DK
Sbjct: 683 DK 684

[Close]

BLAST of Cucsat.G12138 vs. NCBI nr
Match: XP_008461792.1 (PREDICTED: uncharacterized protein LOC103500309 isoform X3 [Cucumis melo])

HSP 1 Score: 234 bits (596), Expect = 6.00e-71
Identity = 117/122 (95.90%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFM 60
           MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV WPRAVRGSPFPTSRFTR PFM
Sbjct: 531 MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVTWPRAVRGSPFPTSRFTRVPFM 590

Query: 61  RGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKPV 120
           RGVPGGFRARPPMKL ARSMQWKRDNQT TADNGASLSGNSIPSPGARSLTYVRTEPKP 
Sbjct: 591 RGVPGGFRARPPMKLGARSMQWKRDNQTATADNGASLSGNSIPSPGARSLTYVRTEPKPA 650

Query: 121 DK 122
           DK
Sbjct: 651 DK 652

[Close]

BLAST of Cucsat.G12138 vs. NCBI nr
Match: XP_008461791.1 (PREDICTED: uncharacterized protein LOC103500309 isoform X2 [Cucumis melo] >TYK01130.1 nucleolin 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 234 bits (596), Expect = 6.35e-71
Identity = 117/122 (95.90%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFM 60
           MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV WPRAVRGSPFPTSRFTR PFM
Sbjct: 534 MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVTWPRAVRGSPFPTSRFTRVPFM 593

Query: 61  RGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKPV 120
           RGVPGGFRARPPMKL ARSMQWKRDNQT TADNGASLSGNSIPSPGARSLTYVRTEPKP 
Sbjct: 594 RGVPGGFRARPPMKLGARSMQWKRDNQTATADNGASLSGNSIPSPGARSLTYVRTEPKPA 653

Query: 121 DK 122
           DK
Sbjct: 654 DK 655

[Close]

BLAST of Cucsat.G12138 vs. ExPASy TrEMBL
Match: A0A0A0L9I7 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G697930 PE=4 SV=1)

HSP 1 Score: 243 bits (621), Expect = 1.11e-74
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 1   MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFM 60
           MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFM
Sbjct: 563 MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFM 622

Query: 61  RGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKPV 120
           RGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKPV
Sbjct: 623 RGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKPV 682

Query: 121 DK 122
           DK
Sbjct: 683 DK 684

[Close]

BLAST of Cucsat.G12138 vs. ExPASy TrEMBL
Match: A0A1S3CGU7 (uncharacterized protein LOC103500309 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500309 PE=4 SV=1)

HSP 1 Score: 234 bits (596), Expect = 2.91e-71
Identity = 117/122 (95.90%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFM 60
           MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV WPRAVRGSPFPTSRFTR PFM
Sbjct: 531 MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVTWPRAVRGSPFPTSRFTRVPFM 590

Query: 61  RGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKPV 120
           RGVPGGFRARPPMKL ARSMQWKRDNQT TADNGASLSGNSIPSPGARSLTYVRTEPKP 
Sbjct: 591 RGVPGGFRARPPMKLGARSMQWKRDNQTATADNGASLSGNSIPSPGARSLTYVRTEPKPA 650

Query: 121 DK 122
           DK
Sbjct: 651 DK 652

[Close]

BLAST of Cucsat.G12138 vs. ExPASy TrEMBL
Match: A0A5D3BPZ5 (Nucleolin 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00280 PE=4 SV=1)

HSP 1 Score: 234 bits (596), Expect = 3.07e-71
Identity = 117/122 (95.90%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFM 60
           MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV WPRAVRGSPFPTSRFTR PFM
Sbjct: 534 MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVTWPRAVRGSPFPTSRFTRVPFM 593

Query: 61  RGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKPV 120
           RGVPGGFRARPPMKL ARSMQWKRDNQT TADNGASLSGNSIPSPGARSLTYVRTEPKP 
Sbjct: 594 RGVPGGFRARPPMKLGARSMQWKRDNQTATADNGASLSGNSIPSPGARSLTYVRTEPKPA 653

Query: 121 DK 122
           DK
Sbjct: 654 DK 655

[Close]

BLAST of Cucsat.G12138 vs. ExPASy TrEMBL
Match: A0A1S3CFZ8 (uncharacterized protein LOC103500309 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500309 PE=4 SV=1)

HSP 1 Score: 234 bits (596), Expect = 3.07e-71
Identity = 117/122 (95.90%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFM 60
           MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV WPRAVRGSPFPTSRFTR PFM
Sbjct: 534 MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVTWPRAVRGSPFPTSRFTRVPFM 593

Query: 61  RGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKPV 120
           RGVPGGFRARPPMKL ARSMQWKRDNQT TADNGASLSGNSIPSPGARSLTYVRTEPKP 
Sbjct: 594 RGVPGGFRARPPMKLGARSMQWKRDNQTATADNGASLSGNSIPSPGARSLTYVRTEPKPA 653

Query: 121 DK 122
           DK
Sbjct: 654 DK 655

[Close]

BLAST of Cucsat.G12138 vs. ExPASy TrEMBL
Match: A0A5A7U3W4 (Nucleolin 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00490 PE=4 SV=1)

HSP 1 Score: 234 bits (596), Expect = 5.14e-71
Identity = 117/122 (95.90%), Postives = 117/122 (95.90%), Query Frame = 0


Query: 1   MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVIWPRAVRGSPFPTSRFTRAPFM 60
           MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTV WPRAVRGSPFPTSRFTR PFM
Sbjct: 562 MRKESAENALSLDGTSFMSRILKVVRKNASQLEGASTVTWPRAVRGSPFPTSRFTRVPFM 621

Query: 61  RGVPGGFRARPPMKLRARSMQWKRDNQTTTADNGASLSGNSIPSPGARSLTYVRTEPKPV 120
           RGVPGGFRARPPMKL ARSMQWKRDNQT TADNGASLSGNSIPSPGARSLTYVRTEPKP 
Sbjct: 622 RGVPGGFRARPPMKLGARSMQWKRDNQTATADNGASLSGNSIPSPGARSLTYVRTEPKPA 681

Query: 121 DK 122
           DK
Sbjct: 682 DK 683

The following BLAST results are available for this feature:

BLAST of Cucsat.G12138 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G12138 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651785.1	1.26e-74	100.00	nucleolin 1 isoform X3 [Cucumis sativus] >KGN58820.2 hypothetical protein Csa_00...	[more]
XP_011651784.1	1.34e-74	100.00	nucleolin 1 isoform X2 [Cucumis sativus]	[more]
XP_011651783.1	2.29e-74	100.00	nucleolin 1 isoform X1 [Cucumis sativus]	[more]
XP_008461792.1	6.00e-71	95.90	PREDICTED: uncharacterized protein LOC103500309 isoform X3 [Cucumis melo]	[more]
XP_008461791.1	6.35e-71	95.90	PREDICTED: uncharacterized protein LOC103500309 isoform X2 [Cucumis melo] >TYK01...	[more]

BLAST of Cucsat.G12138 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9I7	1.11e-74	100.00	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G697930 PE=4 SV...	[more]
A0A1S3CGU7	2.91e-71	95.90	uncharacterized protein LOC103500309 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3BPZ5	3.07e-71	95.90	Nucleolin 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold6...	[more]
A0A1S3CFZ8	3.07e-71	95.90	uncharacterized protein LOC103500309 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7U3W4	5.14e-71	95.90	Nucleolin 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 515..587 e-value: 3.2E-21 score: 86.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 516..584 e-value: 1.8E-17 score: 62.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 514..591 score: 17.233515
None	No IPR available	GENE3D	1.20.1390.10	PWI domain	coord: 15..96 e-value: 7.2E-10 score: 40.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..247
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 341..362
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..192
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 644..670
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 642..684
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 233..247
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..193
None	No IPR available	PANTHER	PTHR14738:SF32	RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN	coord: 6..680
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 463..595 e-value: 2.8E-24 score: 87.8
IPR002483	PWI domain	PFAM	PF01480	PWI	coord: 29..92 e-value: 4.4E-7 score: 30.1
IPR040366	Nuclear polyadenylated RNA-binding protein Nab2/ZC3H14	PANTHER	PTHR14738	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14	coord: 6..680
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 508..588

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G12138.T8	Cucsat.G12138.T8	mRNA
Cucsat.G12138.T1	Cucsat.G12138.T1	mRNA
Cucsat.G12138.T7	Cucsat.G12138.T7	mRNA
Cucsat.G12138.T2	Cucsat.G12138.T2	mRNA
Cucsat.G12138.T6	Cucsat.G12138.T6	mRNA
Cucsat.G12138.T5	Cucsat.G12138.T5	mRNA
Cucsat.G12138.T4	Cucsat.G12138.T4	mRNA
Cucsat.G12138.T3	Cucsat.G12138.T3	mRNA
Cucsat.G12138.T9	Cucsat.G12138.T9	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1900364	negative regulation of mRNA polyadenylation
biological_process	GO:0043488	regulation of mRNA stability
biological_process	GO:0006397	mRNA processing
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008143	poly(A) binding
molecular_function	GO:0003676	nucleic acid binding