Cucsat.G10662 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G10662
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	50S ribosomal protein L6
Location	ctg1681: 252865 .. 256163 (+)
RNA-Seq Expression	Cucsat.G10662
Synteny	Cucsat.G10662

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTCTGTCTTCTCCACCTTATCCTTCTCGTCACCTCTTGCCTGCCTGCAAGTCACTGTGTCATCTTCTTCGTAATCGGACCCAAAGGGGGTCTCTCTCGCTCTTTCACACTTGGGTGTTCTGTTCTCACACTCATAATGGCACTCTCTTCTCCTCCTTCTCTTCAACCTCCAACTTCGATACACTCACCTAAGTAAGTTCTTGTGTTTTTTTCTTTTTTTTTTTCTTTTCTAAATATATGAATTCGTGATAATTCGTGCCTACATTTCTGGCTATTTAGCTGACTTAATTTGAGGATGTCTGTCTAGACCTCAGGAAAATCTTTGGGAGACTCATTTTCAGGGTTCAGGGTATATATATGATTTACGTGTACCGGGAATTTTCTTAATTGTTCCTTTTTTCACATTCAGAGAGCTTCTTGAAACGCATCGGTTGATTTTGGGGTTGTTGGGGTTGTGTGTCTTCCATTTTGGTCTAATGATGAATTAGTTATATCTATAATTTCTTTGTTGAATTTTTTCAAGTATGTAGCCATTCCACCAAGACGTTGACAACAAACCTTGAAATTTCAATGATTCTATTGCACGTAGTTCAGATTGAATGTTGAGTTCGCTTTTAGATTAAATTTATCTTACTTCGACAATGTGAAATAGGGGAAGAATGACATCTCCATATTGATTAGTTTTGTGGCTTCTCCCTTTGAGAACATACATCCAAGTATAATTGGGGTGGGCCTTAAGGATAAGGTGAAAGAAAATTGTCATACCCCCTCCTGAACTACCTACTAGCTTAGCTCGGATGACGGCATGATGCCGACTGACATCGTTCTCCTCCAACGATACTTGCCGACTCCGCTGAACTCTTGAACCTGATAAACATTCTAATCTTATATATATAATACTTTACGTGCAACACTAAACCTAGATAACCCATAAACATACATTAAGTGCAACCCTGAAATAATTCACTCCTTTAGAAAATAAACATGATAAAAACATTATAACCAAACGCATATCCATCCAGGATTTACACAACCATAACACCTAGAGCTTACACAAACTGTAAATCAATATTGAGTAAGTTGTTTTTTTAATTACTAATGTCTTGTTTGATAACCATTTGGTTTTTATAAATACTGCTTCTACTATTACGTTTCTGCGTTTGTTATGTACTTTCAATTCATGTTTACAAAAACCAAGTCAAGTTCAGAAAACAAAAGGCATCAATCTAGAGAATTGTTTAAAAGAGTGAATTTTTTTTCCGCTGGTCATGATGCCATGAAGGTGTAGATATGGTAGATAGAATTTAGATTAAGTATCATACCAGGGTCCTTAAATCTAGTTTTGTTTTTATGTTGTCTTAACATTGTAGTTGTTGGTAAAAAAATATTCCTCTGTCTGCCCTTTCCAGTTAGGAGGTTTCAGTCCTCTTCTGTTTGAATATGTGTAGAGCTTCTGTTACACTGGCCTTTGGGTTGATTTTTGTGTGTTTGAACCTTTAGCCATCACTAACAATGGCCATCTACACAATATCCTTTCTTTTATGTGACTGGCTCTTTGCATTTAGAGAGTTATCAAGAAATTAGAATTGTGGACATTTCTTGAACATGGAGTGAGTCTATTGGAAAATTTTTCTCACTCGATTGATTTACTGAGTAGAGCTTGTAAGGGATGCCCTTGAATTAATGTTCTCAAGCAAGTAAGCTTATGGAGTGTATAAAGCCAGGCCTTAGATGATGGATAACAATGGTTTGAGCTCCTTGAAGAAAAGTCTTATTACTAGAAAAAAAGAATAAGAAACTATTTCATAAACACATTAGTCAGTTGCCAACATGAGCATAACACTACCTCCAGAAGTTCAAATCCTCATATGCACGTTTGTTGTTCTCGAAAAAGCATCATAGTAGGTTTCATTTTTTCCTAGGACTGGGATGTTCAATATTTATCCAGTTGAGCCACAAATGATTTAAGACTTGTGTTGTATGTTTGATACGAAGGAAAAAAAGATCAATTTTCTTTATCTATACTCCTTTTGTTTCAACATCATTTTCTTTTTTGTATTTAGGGGATGGTTATATATATATATTTACACACGTTCATTGTTTGTGTTGTTGTCTACTGAAACCATTTTCCTCATTGTATCTCAGCAACTTTCGGTCTACATTTTTGGGAGAAAAAAATGGATTCTGTGTTTCTGCAATGCCTGCATGTCATATTGGTCTGTTGAGGAAGACTATAGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAGTGTAACCATCACATTGCAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTAGGAGAACTTTCAATTCTTTATCCACGAGAGGTTAAAATTGAGAGGGAAGATTCTGGGATCATAAGAGTTAAGAAAGCACTGGAGACAAGAAGAGCCAATCAAATGCATGGACTTTTCAGGTATTCTCATCATGGATTTCACTTTTCTTCCTCTTTAAGTTTTACTTGGACGGTATAATATAAAGTTTACCTTCACCTATCAGCTTAAGCTTTTGAGTTATTTGGAGATAGTTTACACGGGTCACTTGCTTTTATGTCTTTTCAAATTCTGAAAATCCAAAGATGACTTCATGTTATGAATGCAAACAACCAGCCCTTTGTTCCTTATGAAATTCAAATGAATTATGGCTGATGGAGAAAGAGTAAATGTGTAGGCATGGTGTCATATATGACCATTTGAATTGATTTCCTCAGGACGCTTACAGACAACATGGTGGTAGGAGTATCGAAGGGGTTCGAAAAGAAACTTCAATTGATCGGTGTCGGTTATCGAGCAATGGTAGAAGGAAAAGACTTGGTACTAAATCTTGGGTTCTCTCATCCAGTTAGAATGGCGATACCTGATGGGATTCAGATAAAAGTGGAAGAAAACACAAGAATTACAGTAAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAGTGGAGACCCCCAGAACCTTACAAGGGTAAAGGAGTGAAATATGCTGATGAAATCGTAAGAAGAAAAGAAGGAAAAGCAGGGAAGAAGAAGTAATGGCTTTGTAAAATTCATTGTTGGTTTTTTATTCTCTTTTTGAAATATTTGTATTTTTTTTTTCTATTATCAGAAAGGATTATTGTCACATTACTGTTTGACTTCCATTGAATGTGAAAATTTGCTAGAATTCACACCGTAAAATCTTTTACAAAAATGACTTTGTTTTTTTTCTAGGTTGAAAAAGAAAAAAACTGTGAAATTTCTTTCCCC

Coding sequence (CDS)

TTCTGTCTTCTCCACCTTATCCTTCTCGTCACCTCTTGCCTGCCTGCAAGTCACTGTGTCATCTTCTTCGTAATCGGACCCAAAGGGGGTCTCTCTCGCTCTTTCACACTTGGGTGTTCTGTTCTCACACTCATAATGGCACTCTCTTCTCCTCCTTCTCTTCAACCTCCAACTTCGATACACTCACCTAACAACTTTCGGTCTACATTTTTGGGAGAAAAAAATGGATTCTGTGTTTCTGCAATGCCTGCATGTCATATTGGTCTGTTGAGGAAGACTATAGAATGCAAGGAATCACGAATAGGGAAGCAACCAATTCAAGTGCCATCCAGTGTAACCATCACATTGCAGGGTCAGGATTTGAAAGTTAAGGGTCCTTTAGGAGAACTTTCAATTCTTTATCCACGAGAGGTTAAAATTGAGAGGGAAGATTCTGGGATCATAAGAGTTAAGAAAGCACTGGAGACAAGAAGAGCCAATCAAATGCATGGACTTTTCAGGACGCTTACAGACAACATGGTGGTAGGAGTATCGAAGGGGTTCGAAAAGAAACTTCAATTGATCGGTGTCGGTTATCGAGCAATGGTAGAAGGAAAAGACTTGGTACTAAATCTTGGGTTCTCTCATCCAGTTAGAATGGCGATACCTGATGGGATTCAGATAAAAGTGGAAGAAAACACAAGAATTACAGTAAGTGGATATGATAAATGTGCCATTGGTCAGTTTGCTGCCTCTATTAGACAGTGGAGACCCCCAGAACCTTACAAGGGTAAAGGAGTGAAATATGCTGATGAAATCGTAAGAAGAAAAGAAGGAAAAGCAGGGAAGAAGAAGTAA

Protein sequence

FCLLHLILLVTSCLPASHCVIFFVIGPKGGLSRSFTLGCSVLTLIMALSSPPSLQPPTSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQPIQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK

Homology

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BLAST of Cucsat.G10662 vs. ExPASy Swiss-Prot
Match: O23049 (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 2.1e-93
Identity = 171/233 (73.39%), Postives = 196/233 (84.12%), Query Frame = 0


Query: 46  MALSSPPSLQPPTSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQP 105
           MA S   S QP          RS FLG++N F VS+ P   +G   KTIECKESRIGKQP
Sbjct: 1   MASSLVSSFQP----------RSAFLGDRNVFKVSSTPFAQVGYSSKTIECKESRIGKQP 60

Query: 106 IQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 165
           I VPS+VTI L+GQDLKVKGPLGEL++ YPREV++ +E+SG +RVKK +ETRRANQMHGL
Sbjct: 61  IAVPSNVTIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGL 120

Query: 166 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 225
           FRTLTDNMVVGVSKGFEKKL L+GVGYRA V+GK+LVLNLGFSHPV+M IPD +++KVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEE 180

Query: 226 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 279
           NTRITVSGYDK  IGQFAA++R+WRPPEPYKGKGVKY+DEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGKAGKKK 223

[Close]

BLAST of Cucsat.G10662 vs. ExPASy Swiss-Prot
Match: P82193 (50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=1 SV=2)

HSP 1 Score: 335.1 bits (858), Expect = 7.5e-91
Identity = 161/220 (73.18%), Postives = 191/220 (86.82%), Query Frame = 0


Query: 59  SIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQPIQVPSSVTITLQG 118
           S+  P++ +S FLG K     S +P   IG  RK+++CKESRIGKQPI VP++V I ++G
Sbjct: 2   SLPLPSHMKSVFLGMKVEISTS-VPVTRIGFWRKSVDCKESRIGKQPITVPANVAIAMEG 61

Query: 119 QDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGLFRTLTDNMVVGVS 178
           QDLKVKGPLGELSI YPREV +E+++SG +RV+KA+ETRRANQMHGLFRTLTDNMVVGVS
Sbjct: 62  QDLKVKGPLGELSITYPREVLVEKQESGFLRVRKAVETRRANQMHGLFRTLTDNMVVGVS 121

Query: 179 KGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEENTRITVSGYDKCA 238
           KGFEKKLQL+GVGYRA VEGKDL+L+LGFSHPVRMAIPD +Q+KVEENT++TVSG DK  
Sbjct: 122 KGFEKKLQLVGVGYRATVEGKDLILSLGFSHPVRMAIPDELQVKVEENTKVTVSGRDKSV 181

Query: 239 IGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 279
           +GQFAA+IR WRPPEPYKGKGV+Y DE+VRRKEGKAGKKK
Sbjct: 182 VGQFAATIRSWRPPEPYKGKGVRYVDEVVRRKEGKAGKKK 220

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BLAST of Cucsat.G10662 vs. ExPASy Swiss-Prot
Match: B0C1E7 (50S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplF PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 9.0e-52
Identity = 105/179 (58.66%), Postives = 133/179 (74.30%), Query Frame = 0


Query: 99  SRIGKQPIQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRR 158
           SRIGK PI +P  V +T++GQ + VKGP GELS     EV IE+ D+ ++ V +  E+R 
Sbjct: 2   SRIGKVPIPIPDKVNVTIKGQAVTVKGPKGELSREITPEVAIEQADN-LVTVTRRNESRI 61

Query: 159 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDG 218
           A Q HGL RTL  NMV GVSKGFEKKLQ+ GVGYRA V+G++L+LN+G+S+PV +  P+G
Sbjct: 62  ARQRHGLSRTLIANMVEGVSKGFEKKLQIQGVGYRAQVQGRNLILNVGYSNPVTIEPPEG 121

Query: 219 IQIKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKK 278
           +Q+ VE NT + VSG +K  +G  AA IR  RPPEPYKGKG++YADE VRRK GKAGKK
Sbjct: 122 VQVAVESNTNVIVSGINKEVVGNTAARIRAVRPPEPYKGKGIRYADEYVRRKVGKAGKK 179

[Close]

BLAST of Cucsat.G10662 vs. ExPASy Swiss-Prot
Match: Q8YPJ3 (50S ribosomal protein L6 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=rplF PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.7e-50
Identity = 99/178 (55.62%), Postives = 130/178 (73.03%), Query Frame = 0


Query: 99  SRIGKQPIQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRR 158
           SRIGK+PI VP+ V +T+ G  + VKGP GELS   P  V + +E    ++V +  ETR 
Sbjct: 2   SRIGKRPITVPAKVQVTIDGTKVVVKGPKGELSRELPANVSVSQEGE-TLQVTRRDETRT 61

Query: 159 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDG 218
           + Q+HGL RTL  NMV GVS+GF+++L++ GVGYRA V+G++LVLN+G+SH V++  PDG
Sbjct: 62  SRQLHGLSRTLVANMVEGVSQGFQRRLEIQGVGYRAQVQGRNLVLNMGYSHQVQIEPPDG 121

Query: 219 IQIKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGK 277
           IQ  VE NT + VSGYDK  +G  AA +R  RPPEPYKGKG++YA E+VRRK GK GK
Sbjct: 122 IQFVVENNTNVIVSGYDKEIVGNTAAKVRAVRPPEPYKGKGIRYAGEVVRRKAGKTGK 178

[Close]

BLAST of Cucsat.G10662 vs. ExPASy Swiss-Prot
Match: B7KI01 (50S ribosomal protein L6 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN=rplF PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.2e-50
Identity = 99/179 (55.31%), Postives = 127/179 (70.95%), Query Frame = 0


Query: 99  SRIGKQPIQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRR 158
           SRIGK+PI +P+ VT+ + G  + VKGP GEL    P  V +E +D G++RV +  ++R 
Sbjct: 2   SRIGKRPITIPNKVTVNIDGSHVAVKGPKGELQRTLPTLVIVE-QDEGVLRVVRQDDSRT 61

Query: 159 ANQMHGLFRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDG 218
           A Q HGL RTL  NMV GVSKGFEK+L++ GVGYRA  +G  L LN+G+S PV M +P G
Sbjct: 62  ARQRHGLCRTLVSNMVEGVSKGFEKRLEIQGVGYRAAAQGSKLTLNVGYSKPVEMDMPSG 121

Query: 219 IQIKVEENTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKK 278
           I + VE+NT IT++G DK  +G  AA IR  RPPEPYKGKG++Y  E+VRRK GK GKK
Sbjct: 122 IGVAVEKNTEITITGIDKEIVGNVAAKIRAVRPPEPYKGKGIRYKGEVVRRKAGKTGKK 179

[Close]

BLAST of Cucsat.G10662 vs. NCBI nr
Match: XP_004144493.1 (50S ribosomal protein L6, chloroplastic [Cucumis sativus] >KGN43529.1 hypothetical protein Csa_020508 [Cucumis sativus])

HSP 1 Score: 462 bits (1190), Expect = 1.98e-163
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 46  MALSSPPSLQPPTSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQP 105
           MALSSPPSLQPPTSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQP
Sbjct: 1   MALSSPPSLQPPTSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQP 60

Query: 106 IQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 165
           IQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL
Sbjct: 61  IQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120

Query: 166 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 225
           FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180

Query: 226 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 278
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]

BLAST of Cucsat.G10662 vs. NCBI nr
Match: XP_008455431.1 (PREDICTED: 50S ribosomal protein L6, chloroplastic [Cucumis melo])

HSP 1 Score: 456 bits (1173), Expect = 7.73e-161
Identity = 229/233 (98.28%), Postives = 231/233 (99.14%), Query Frame = 0


Query: 46  MALSSPPSLQPPTSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQP 105
           MALSSPPSLQPP+ IHSPNNFRSTFLGEKNGFCVSAMP CHIGLLRKTIECKESRIGKQP
Sbjct: 1   MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP 60

Query: 106 IQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 165
           IQVPS+VTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL
Sbjct: 61  IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120

Query: 166 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 225
           FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180

Query: 226 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 278
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]

BLAST of Cucsat.G10662 vs. NCBI nr
Match: XP_038888704.1 (50S ribosomal protein L6, chloroplastic [Benincasa hispida])

HSP 1 Score: 432 bits (1112), Expect = 1.52e-151
Identity = 214/233 (91.85%), Postives = 227/233 (97.42%), Query Frame = 0


Query: 46  MALSSPPSLQPPTSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQP 105
           MA+SS PSLQPP+ +H+ NNFRSTFLGE+NGF VSAMP CHIG+LRKTIECKESRIGKQP
Sbjct: 1   MAVSSTPSLQPPSLMHTANNFRSTFLGERNGFYVSAMPVCHIGVLRKTIECKESRIGKQP 60

Query: 106 IQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 165
           I VPS+VTI+LQGQDLKVKGPLGELSILYPRE+KIEREDSGIIRVKKALETRRANQMHGL
Sbjct: 61  IPVPSNVTISLQGQDLKVKGPLGELSILYPREIKIEREDSGIIRVKKALETRRANQMHGL 120

Query: 166 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 225
           FRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPV+MAIPDGIQ+KVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVKMAIPDGIQVKVEE 180

Query: 226 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 278
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]

BLAST of Cucsat.G10662 vs. NCBI nr
Match: XP_022952947.1 (50S ribosomal protein L6, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 409 bits (1051), Expect = 2.78e-142
Identity = 207/233 (88.84%), Postives = 218/233 (93.56%), Query Frame = 0


Query: 46  MALSSPPSLQPPTSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQP 105
           MA+SS P L   + I   NNFRSTFLGEKNGF +S MP  H G+LRKTIECKESRIGKQP
Sbjct: 1   MAVSSTPCLHHRSLIA--NNFRSTFLGEKNGFTISTMPVSHTGILRKTIECKESRIGKQP 60

Query: 106 IQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 165
           IQVPS+V ITLQGQDLKVKGPLGELSILYPREVKIEREDSGI+RVKKALETRRANQMHGL
Sbjct: 61  IQVPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGL 120

Query: 166 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 225
           FRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIP+G+Q+KVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEE 180

Query: 226 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 278
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231

[Close]

BLAST of Cucsat.G10662 vs. NCBI nr
Match: KAG6572299.1 (50S ribosomal protein L6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 409 bits (1050), Expect = 3.94e-142
Identity = 206/233 (88.41%), Postives = 218/233 (93.56%), Query Frame = 0


Query: 46  MALSSPPSLQPPTSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQP 105
           MA+SS P L   + I   NNFRSTFLGEKNGF +S MP  H G+LRKTIECKESRIGKQP
Sbjct: 1   MAVSSTPCLHHRSLIA--NNFRSTFLGEKNGFTISTMPVSHTGILRKTIECKESRIGKQP 60

Query: 106 IQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 165
           IQVPS+V ITLQGQDLKVKGPLGELSILYPREVKIEREDSGI+RVKKALETRRANQMHGL
Sbjct: 61  IQVPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGL 120

Query: 166 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 225
           FRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIP+G+Q+KVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEE 180

Query: 226 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 278
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 231

[Close]

BLAST of Cucsat.G10662 vs. ExPASy TrEMBL
Match: A0A0A0K3K9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044200 PE=3 SV=1)

HSP 1 Score: 462 bits (1190), Expect = 9.60e-164
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 46  MALSSPPSLQPPTSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQP 105
           MALSSPPSLQPPTSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQP
Sbjct: 1   MALSSPPSLQPPTSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQP 60

Query: 106 IQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 165
           IQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL
Sbjct: 61  IQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120

Query: 166 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 225
           FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180

Query: 226 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 278
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]

BLAST of Cucsat.G10662 vs. ExPASy TrEMBL
Match: A0A1S3C0W5 (50S ribosomal protein L6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495590 PE=3 SV=1)

HSP 1 Score: 456 bits (1173), Expect = 3.74e-161
Identity = 229/233 (98.28%), Postives = 231/233 (99.14%), Query Frame = 0


Query: 46  MALSSPPSLQPPTSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQP 105
           MALSSPPSLQPP+ IHSPNNFRSTFLGEKNGFCVSAMP CHIGLLRKTIECKESRIGKQP
Sbjct: 1   MALSSPPSLQPPSLIHSPNNFRSTFLGEKNGFCVSAMPVCHIGLLRKTIECKESRIGKQP 60

Query: 106 IQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 165
           IQVPS+VTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL
Sbjct: 61  IQVPSNVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 120

Query: 166 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 225
           FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 180

Query: 226 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 278
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 233

[Close]

BLAST of Cucsat.G10662 vs. ExPASy TrEMBL
Match: A0A6J1GLT4 (50S ribosomal protein L6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111455470 PE=3 SV=1)

HSP 1 Score: 409 bits (1051), Expect = 1.34e-142
Identity = 207/233 (88.84%), Postives = 218/233 (93.56%), Query Frame = 0


Query: 46  MALSSPPSLQPPTSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQP 105
           MA+SS P L   + I   NNFRSTFLGEKNGF +S MP  H G+LRKTIECKESRIGKQP
Sbjct: 1   MAVSSTPCLHHRSLIA--NNFRSTFLGEKNGFTISTMPVSHTGILRKTIECKESRIGKQP 60

Query: 106 IQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 165
           IQVPS+V ITLQGQDLKVKGPLGELSILYPREVKIEREDSGI+RVKKALETRRANQMHGL
Sbjct: 61  IQVPSNVNITLQGQDLKVKGPLGELSILYPREVKIEREDSGILRVKKALETRRANQMHGL 120

Query: 166 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 225
           FRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIP+G+Q+KVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPEGLQVKVEE 180

Query: 226 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 278
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231

[Close]

BLAST of Cucsat.G10662 vs. ExPASy TrEMBL
Match: A0A6J1HVU0 (50S ribosomal protein L6, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111468304 PE=3 SV=1)

HSP 1 Score: 405 bits (1041), Expect = 4.48e-141
Identity = 205/233 (87.98%), Postives = 217/233 (93.13%), Query Frame = 0


Query: 46  MALSSPPSLQPPTSIHSPNNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQP 105
           MA+SS P L   + I   NNFRSTFLGEKNGF +S MP  H G+LRKTIECKESRIGKQP
Sbjct: 1   MAVSSTPCLHHRSLIA--NNFRSTFLGEKNGFTISTMPVSHTGILRKTIECKESRIGKQP 60

Query: 106 IQVPSSVTITLQGQDLKVKGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGL 165
           IQVPS+V ITLQGQDLKVKGPLGELSI+YPREVKIEREDSGI+RVKKALETRRANQMHGL
Sbjct: 61  IQVPSNVNITLQGQDLKVKGPLGELSIIYPREVKIEREDSGILRVKKALETRRANQMHGL 120

Query: 166 FRTLTDNMVVGVSKGFEKKLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEE 225
           FRTLTDNMVVGVSKGFEKKLQL+GVGYRAM+EGKDLVLNLGFSHPV MAIP+G+Q+KVEE
Sbjct: 121 FRTLTDNMVVGVSKGFEKKLQLVGVGYRAMLEGKDLVLNLGFSHPVIMAIPEGLQVKVEE 180

Query: 226 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 278
           NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK
Sbjct: 181 NTRITVSGYDKCAIGQFAASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 231

[Close]

BLAST of Cucsat.G10662 vs. ExPASy TrEMBL
Match: A0A6J1C3Z5 (50S ribosomal protein L6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008030 PE=3 SV=1)

HSP 1 Score: 404 bits (1038), Expect = 1.07e-140
Identity = 199/215 (92.56%), Postives = 209/215 (97.21%), Query Frame = 0


Query: 64  NNFRSTFLGEKNGFCVSAMPACHIGLLRKTIECKESRIGKQPIQVPSSVTITLQGQDLKV 123
           +NFRSTFLGEKNGF VS MP CHIGLLRKTIECKESRIGKQPIQVPS+V I LQGQDLKV
Sbjct: 12  SNFRSTFLGEKNGFSVSTMPVCHIGLLRKTIECKESRIGKQPIQVPSNVIIALQGQDLKV 71

Query: 124 KGPLGELSILYPREVKIEREDSGIIRVKKALETRRANQMHGLFRTLTDNMVVGVSKGFEK 183
           KGPLGELSILYPREVKIEREDSGI+RVKKA+ETRRA QMHGLFRTLTDNMVVGVS+GFEK
Sbjct: 72  KGPLGELSILYPREVKIEREDSGILRVKKAVETRRAKQMHGLFRTLTDNMVVGVSRGFEK 131

Query: 184 KLQLIGVGYRAMVEGKDLVLNLGFSHPVRMAIPDGIQIKVEENTRITVSGYDKCAIGQFA 243
           KLQL+GVGYRAM+EGKDLVLNLGFSHPVRMAIPDG+Q+KVEENTRITVSGYDKCAIGQFA
Sbjct: 132 KLQLVGVGYRAMLEGKDLVLNLGFSHPVRMAIPDGLQVKVEENTRITVSGYDKCAIGQFA 191

Query: 244 ASIRQWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 278
           ASIRQWRPPEPYKGKGVKYADE+VRRKEGKAGKKK
Sbjct: 192 ASIRQWRPPEPYKGKGVKYADEVVRRKEGKAGKKK 226

The following BLAST results are available for this feature:

BLAST of Cucsat.G10662 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23049	2.1e-93	73.39	50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL6 ...	[more]
P82193	7.5e-91	73.18	50S ribosomal protein L6, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL6 PE=...	[more]
B0C1E7	9.0e-52	58.66	50S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 G...	[more]
Q8YPJ3	1.7e-50	55.62	50S ribosomal protein L6 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)...	[more]
B7KI01	2.2e-50	55.31	50S ribosomal protein L6 OS=Gloeothece citriformis (strain PCC 7424) OX=65393 GN...	[more]

BLAST of Cucsat.G10662 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144493.1	1.98e-163	100.00	50S ribosomal protein L6, chloroplastic [Cucumis sativus] >KGN43529.1 hypothetic...	[more]
XP_008455431.1	7.73e-161	98.28	PREDICTED: 50S ribosomal protein L6, chloroplastic [Cucumis melo]	[more]
XP_038888704.1	1.52e-151	91.85	50S ribosomal protein L6, chloroplastic [Benincasa hispida]	[more]
XP_022952947.1	2.78e-142	88.84	50S ribosomal protein L6, chloroplastic-like [Cucurbita moschata]	[more]
KAG6572299.1	3.94e-142	88.41	50S ribosomal protein L6, chloroplastic, partial [Cucurbita argyrosperma subsp. ...	[more]

BLAST of Cucsat.G10662 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3K9	9.60e-164	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G044200 PE=3 SV=1	[more]
A0A1S3C0W5	3.74e-161	98.28	50S ribosomal protein L6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495590 ...	[more]
A0A6J1GLT4	1.34e-142	88.84	50S ribosomal protein L6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1HVU0	4.48e-141	87.98	50S ribosomal protein L6, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1C3Z5	1.07e-140	92.56	50S ribosomal protein L6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019906	Ribosomal protein L6, bacterial-type	PRINTS	PR00059	RIBOSOMALL6	coord: 169..194 score: 60.3 coord: 239..260 score: 66.42 coord: 197..213 score: 49.15
IPR019906	Ribosomal protein L6, bacterial-type	TIGRFAM	TIGR03654	TIGR03654	coord: 99..274 e-value: 7.7E-71 score: 235.4
IPR019906	Ribosomal protein L6, bacterial-type	HAMAP	MF_01365_B	Ribosomal_L6_B	coord: 98..274 score: 37.087917
IPR020040	Ribosomal protein L6, alpha-beta domain	PFAM	PF00347	Ribosomal_L6	coord: 108..180 e-value: 2.5E-14 score: 53.7 coord: 188..262 e-value: 1.5E-19 score: 70.4
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 97..180 e-value: 3.1E-25 score: 90.5
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	GENE3D	3.90.930.12		coord: 181..278 e-value: 9.9E-41 score: 139.8
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 181..274
IPR036789	Ribosomal protein L6, alpha-beta domain superfamily	SUPERFAMILY	56053	Ribosomal protein L6	coord: 99..180
IPR000702	Ribosomal protein L6	PANTHER	PTHR11655	60S/50S RIBOSOMAL PROTEIN L6/L9	coord: 65..278
None	No IPR available	PANTHER	PTHR11655:SF38	BNAA10G03220D PROTEIN	coord: 65..278
IPR002358	Ribosomal protein L6, conserved site	PROSITE	PS00525	RIBOSOMAL_L6_1	coord: 252..260

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G10662.T1	Cucsat.G10662.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome