Cucsat.G10249 (gene) Cucumber (B10) v3

Overview
NameCucsat.G10249
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionUnknown protein
Locationctg1674: 307985 .. 312545 (+)
RNA-Seq ExpressionCucsat.G10249
SyntenyCucsat.G10249
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTTTCAATTAAGTCCGTTTTCTCTTTTCTAAAACCCTAGGATGAAAACACGTTCCTTCCCTTAATCAAAACGCACGAAGATGCAGAACTTGTCGTCTCAGCCGCTGCACTCTCAATCGTCGTCTCAGTCGTTGCCTTTTCAATTCGCATCTCCATCTCTCTCGGCTACACTCTCAATTTTCATCTCCATCTCTCTTTTGGTTCCTCTCAATCGCCATCTCCATCTCTGCTACACTCTCAATTTTCATCTACATCTCTCTTTTGGTTCCTCTCAATCGTCATCTCCATCTCTGCTCTCTTATTGTCGCTCCTTCCAAATTCGTCCATCGGATTTCTTCGACCTCTCGAACTCGGCTGGCGTCAAGGCATTGGAGCTTCGCATTGGCTAGGGTGAAACCCCCCTTGATGGAGATCGGGTAATTTCATTTCAAAATCCAATTTAGGGTGATTTGTTCTAGTGGCTAGATTGACTAATAGAAGGAGCAGAGCAGGAAGAGATGAGTTTTTTTTTTTATATAAATATTTTGTTGACCCTTTTTCTGGGTTTAGAGGCTTTCCAATTGATGAGGAATTAAATTCATATGATGAAAAACAATTCGAAAAAGAAAGTAGAAATCATAAGAATTCATCCAAAACGCCTCTTGTTAAAAATTGATGCGTTGTTTTCTTACTACTTTACTTTAGGTTGGATCGGTTCTCGTTTGAAAATTCTCTTTTGTTTTCCATGGTTTGTCCATATATTTTTTTCATTCAATTTTTTAAATCATGCAATTTTTTTCCTGTACAATTTTTCAGGGTGGAGTCATCTTTCAGTATCCATTAAACGAAAGGTATTTTGTTTACTATATTGATATATTTTTGTTTATGATGTTGGGTTGATGAAATTTAACTTCCATTCTACTTCAATATCCATAATCAAACAAACCTATCAAAATGGCCATTACTCTACAGTTCATGGCAAAATGGCCATTACTCTACAGCTCATGGCCACTGTGAGGTATTTTTCTTCTCTCTTAAAGAAATTGATCTTTCTCTTCACCTTAGAGTTTCCATTTTTCAAATGTATTTTTGATTGTGACTCAACTTACTGATATTTTGATGTATTTCTGTGTTTTTGTTTTCCTTAGTGAACATGGGTTGCTATATTTTTAGAATTCAAGGACACACTAGTACAACATAAACAAATCCTATTCAAGTAAAAGTTGTAAATATAAGTTGTGCTTACAAAAGGTGTTAATTGAGCATCTTTTTTATTTTTCATTATTTTTGTTTTCTTGTTTCTCATTACTTAGAAGTCAATTTGTTTATTTGTCTTATCCCGTTTCTCTTGTCCGAATTTTCCTTTGTTTTCATTGTACACATGAATCGAAATCTCAATCGAGGATATTTCTTTGTCAGTTTTCGATGGAAAGTTTTGCAATTGGGATGTGAGTGTAACGTTAGTTCAATTTTGACTTGGTTCTTGATGTCATATTGCCTCATGATGTCTTGGATTGTTGGGTTAGAGTTTGTTTGATAGATAACAAGATTCTTAGGATTAAATGTGATATTAGTGGATGTAAAGAAACAAGACTCGTCTGTTTAAGAGAAGTGTATATAATATGTAATTGGTCATTTGGATTACATCTTGTGAACTCTCTCGTATCATTTCTTAGTTGTAGTAGAAAAATGATTTGATGATTTCTATGGGAGCTCAAAAGCGTTGTAAAAGGGTGCTTGTAGTTTTGAACTTAATTGATATATGAATGTTCTTGGCCTTCAAGGTGGATGGACTTATGGAATAGGTTGAAGGAAAAACCTGAATGTTACATCCTCTCAGGCCTTTGTGAAGAATAAATAGGTACTAAGGCACATGATCTTATTGATTTAAACTCATTATGGATGTTGTTTGAGTAGTTGATGGGTAGGACCTTTGTTACTGAGGATAAAGTGGAATAAGAGGTATTTTATTTGGTGCAGAGGATTTTTGTTGAGACTATATGACATTCATGTTTGTTCGTTTCTTGGTTTTTTAGCAAAGAACAGTAACCTTACTGCTAGGAGAAGGTGATACCAATGACTACATAAAAGTTTATGATTCATTGCCTGTCAATTGATAGAACTAATTCATGCACAGCGGAAAAAGAATCGAATTTCTACCCTAATTGCCACAATTAACATCTAACCATAAACTAATCAAATTAGGGTTTTAAGAAGTATTACCTTTGAAGCTTTCAAAAGGTTTGATGTCTTCTTACCAATTCTACCCGAGACCACCACTAGTACTCAACTGCTATCCTCTAGACAAAGAACCGGGTTGTGGGACCCAATTTTGGTGTAGAAAGTAATGGAGATAAAATGAGATTGGAAGCTTTCTTTTTTCTTTTGTTGAGATTATGAAAATGATAAAAGAGGCAAAAGTCCTTCAACATTTGAAAACATCTCTATTTATAGCCTAATTACATGCAAAAATGCATGCAATTCAATTGCCAAATCTCAACACCTAATATTCCACTAACAATTAGTGGAACTTAGTGGGCTAGGTGTCTATATCTCATATAGCCACATATCCCACTAAGAGTTAGTGGGATTATCCAACAAAATGTTGGATTTTCCCACTAACTTAGTCCAAGGGTAAAATGGTCATTAGATTTTTCTAGTCAAAAGTCAAACTTTGACTTTTCTAAGTCAAAAGTCAATATTTTGACTTTTTACCATTTTGTCCGTCTTGACTAATTCCAACCTCCCGAGCATGAATCCGCATTCATTTTTCCAAAATTCAAATCACGTTTGAATATAAGGCCGGTCAAAGTTTGACTTTTCAAAGTCAAAAGTCAACATTTTGACTTTTTACTATTTTTGACCAATTCCGAGCTTCTTAGTATGAATCCGCATTCATACTTATAGTATGTAAAACATAAAGCTCTATTTCTAATTAGAAGACCGACGATTATATCACTGTATATGTCGGTTTTCCTTTCTTCTCCCTATTCGAACAATTCGACTTATTTCATCACACTGTTCTAAGTTTAATCCATATGAGCTAGCAGAGGAACCTAATGGACCTATAGATCATGGGCTCCAACGATTCAAGATTAACTAGCTAAACTCTTTTAAACCGAGTTAATCAACATTCGTTAACTAACGGGTCATTCCACTAAAGTCCCGTAGTTGCACTCCCCTCACTATAGATATATTTGTGTCCATTTGATAAAACCATAATCAGTAAGTTAATCCTTCACAGGTTGCTCGTAACCTTGGCTGGGTCAAAATACCGTTTTACCCCCAAGATTACATCTTGCTCCTTAAGTCCCACTAATCCACTATTGAACAATTGGTTTAAGGTTCAACCTATAAACTTAATCCCTCTCGGGCCAATGAGAGGGTGGGGCCCCTTGTTCAAGACTTGGATTCAGTGCTTAAGAGAGCAACCTATCTACTAACCCTAAAGCGGGTAGGAGTGAATTTCATCTTGTACCCTATGTTCCCAGCTATCCACCCGATCTTACCCCTGAAATGGGAGGCTTATTGGGCCAACGCTGATGAGCTGCCCTCACCTATGCAGATCTAAGGATAATCTCGTATGAACAGGAGTTCATAGTTAACTCAGGATTAAGACTAAGTTACCTAGGTCATCAATAATTGAGATAGTCAGTTTTAAACAGTAAACGGTGTTATAACGTAAAAATGACTAATTCATGGTTCAGTCTTATGTAAACATTTTACATAGGATGCCCCCACTTTCATGTCTCTACATGAACGATTAGGATCACATCGTTTGTACTTCAAAGTGGGCCGCATCCATAGTTTCTCTAAATAAGGCGCCCAACCTTTATTTCATATACTATAGACTATTTAGGCTATATACTCGAACTTGATCCACGTTTATGTTTACACATAAAGTTCAAGTTTATTCAAAAAATAGCCTTGGAACTTGATTTATTGGATTTAAGATTATAATATTTAATTTCTCAATAACAACTTTATTGAACAGAATATGATTTACAAACTACGAGTTTTAGGACAAAATTCCAACATCAATATCCTAAATTCATAAGATTTGGTCTGCTCTATACCTTGCCGCAAAAAGATTTACATTGTGAGTGTAGGAATTAAAAAAGACATAGTTTTGTTAAGTAGTATATGAGTAACATTCTCAATCCTTCAACTGCAAAATAATAATAAAGACATGAAATGTGAGCTCGATATCTTCTGCAATTTTAATGATCTTTAGGTATTTACATTGTTTTCAATTATTGTTCCTTCTTTTACACAGTTATTCACTATTAAGTTCGAAACCTGGAATAAACTAGGTTGAAATGCACAAGTAGGTTGTTATATCTTTATTGTTGAAATGCCAAATTCAAAGTAAGCCAGGATTTTCAACTTTAATTGAACGGTTGAAATGTCGTGTTTTTGTTATTTGGCATTCTGATTAACCAAGTAAATTAGCCTACATTGTGATTGTGTTATGTGTTATTTAAGATTTTAGGCCTAAGGTTCAAATAGTTGTCATAAAAACTCTCTAACCCTATTGATGTTTATGTAATTTGTATTATCTCATATTTTCTCTGTTAATAGC

Coding sequence (CDS)

ATGCAGAACTTGTCGTCTCAGCCGCTGCACTCTCAATCGTCGTCTCAGTCGTTGCCTTTTCAATTCGCATCTCCATCTCTCTCGGCTACACTCTCAATTTTCATCTCCATCTCTCTTTTGGTTCCTCTCAATCGCCATCTCCATCTCTGCTACACTCTCAATTTTCATCTACATCTCTCTTTTGGTTCCTCTCAATCGTCATCTCCATCTCTGCTCTCTTATTGTCGCTCCTTCCAAATTCGTCCATCGGATTTCTTCGACCTCTCGAACTCGGCTGGCGTCAAGGCATTGGAGCTTCGCATTGGCTAG

Protein sequence

MQNLSSQPLHSQSSSQSLPFQFASPSLSATLSIFISISLLVPLNRHLHLCYTLNFHLHLSFGSSQSSSPSLLSYCRSFQIRPSDFFDLSNSAGVKALELRIG
Homology
[Close]
BLAST of Cucsat.G10249 vs. NCBI nr
Match: KAE8648488.1 (hypothetical protein Csa_008176 [Cucumis sativus] >KAE8653143.1 hypothetical protein Csa_019786 [Cucumis sativus])

HSP 1 Score: 192 bits (488), Expect = 1.87e-61
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 

Query: 1   MQNLSSQPLHSQSSSQSLPFQFASPSLSATLSIFISISLLVPLNRHLHLCYTLNFHLHLS 60
           MQNLSSQPLHSQSSSQSLPFQFASPSLSATLSIFISISLLVPLNRHLHLCYTLNFHLHLS
Sbjct: 1   MQNLSSQPLHSQSSSQSLPFQFASPSLSATLSIFISISLLVPLNRHLHLCYTLNFHLHLS 60

Query: 61  FGSSQSSSPSLLSYCRSFQIRPSDFFDLSNSAGVKALELRIG 102
           FGSSQSSSPSLLSYCRSFQIRPSDFFDLSNSAGVKALELRIG
Sbjct: 61  FGSSQSSSPSLLSYCRSFQIRPSDFFDLSNSAGVKALELRIG 102

[Close]
BLAST of Cucsat.G10249 vs. NCBI nr
Match: KAE8648279.1 (hypothetical protein Csa_017817 [Cucumis sativus])

HSP 1 Score: 190 bits (483), Expect = 1.08e-60
Identity = 101/102 (99.02%), Postives = 101/102 (99.02%), Query Frame = 0 

Query: 1   MQNLSSQPLHSQSSSQSLPFQFASPSLSATLSIFISISLLVPLNRHLHLCYTLNFHLHLS 60
           MQNLSSQPLHSQS SQSLPFQFASPSLSATLSIFISISLLVPLNRHLHLCYTLNFHLHLS
Sbjct: 1   MQNLSSQPLHSQSPSQSLPFQFASPSLSATLSIFISISLLVPLNRHLHLCYTLNFHLHLS 60

Query: 61  FGSSQSSSPSLLSYCRSFQIRPSDFFDLSNSAGVKALELRIG 102
           FGSSQSSSPSLLSYCRSFQIRPSDFFDLSNSAGVKALELRIG
Sbjct: 61  FGSSQSSSPSLLSYCRSFQIRPSDFFDLSNSAGVKALELRIG 102

[Close]
BLAST of Cucsat.G10249 vs. NCBI nr
Match: TYK19608.1 (putative nucleobase-ascorbate transporter 10 [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 1.72e-04
Identity = 36/75 (48.00%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 28  SATLSIFISISLLVPLNRHLHLCYTLNFHLHLSFGSSQSSSPSLLSYCRSFQIRPSDFFD 87
           +A LSI +SISL VPL+R LHLC       H++   S+ ++P              DFFD
Sbjct: 11  AAALSITVSISLSVPLSRRLHLCT------HIA-APSKFAAP--------------DFFD 64

Query: 88  LSNSAGVKALELRIG 102
           L NSA VKALELRIG
Sbjct: 71  LPNSADVKALELRIG 64

[Close]
BLAST of Cucsat.G10249 vs. NCBI nr
Match: KAA0033253.1 (putative nucleobase-ascorbate transporter 10 [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 1.73e-04
Identity = 36/75 (48.00%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 28  SATLSIFISISLLVPLNRHLHLCYTLNFHLHLSFGSSQSSSPSLLSYCRSFQIRPSDFFD 87
           +A LSI +SISL VPL+R LHLC       H++   S+ ++P              DFFD
Sbjct: 11  AAALSITVSISLSVPLSRRLHLCT------HIA-APSKFAAP--------------DFFD 64

Query: 88  LSNSAGVKALELRIG 102
           L NSA VKALELRIG
Sbjct: 71  LPNSADVKALELRIG 64

[Close]
BLAST of Cucsat.G10249 vs. ExPASy TrEMBL
Match: A0A0A0LX17 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G408740 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.83e-22
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MQNLSSQPLHSQSSSQSLPFQFASPSLSATLSIFISISLLVPLNRHLHLC 50
          MQNLSSQPLHSQSSSQSLPFQFASPSLSATLSIFISISLLVPLNRHLHLC
Sbjct: 1  MQNLSSQPLHSQSSSQSLPFQFASPSLSATLSIFISISLLVPLNRHLHLC 50

[Close]
BLAST of Cucsat.G10249 vs. ExPASy TrEMBL
Match: A0A5D3D7R2 (Putative nucleobase-ascorbate transporter 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9G00130 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 8.35e-05
Identity = 36/75 (48.00%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 28  SATLSIFISISLLVPLNRHLHLCYTLNFHLHLSFGSSQSSSPSLLSYCRSFQIRPSDFFD 87
           +A LSI +SISL VPL+R LHLC       H++   S+ ++P              DFFD
Sbjct: 11  AAALSITVSISLSVPLSRRLHLCT------HIA-APSKFAAP--------------DFFD 64

Query: 88  LSNSAGVKALELRIG 102
           L NSA VKALELRIG
Sbjct: 71  LPNSADVKALELRIG 64

[Close]
BLAST of Cucsat.G10249 vs. ExPASy TrEMBL
Match: A0A5A7SS46 (Putative nucleobase-ascorbate transporter 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G00490 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 8.37e-05
Identity = 36/75 (48.00%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 28  SATLSIFISISLLVPLNRHLHLCYTLNFHLHLSFGSSQSSSPSLLSYCRSFQIRPSDFFD 87
           +A LSI +SISL VPL+R LHLC       H++   S+ ++P              DFFD
Sbjct: 11  AAALSITVSISLSVPLSRRLHLCT------HIA-APSKFAAP--------------DFFD 64

Query: 88  LSNSAGVKALELRIG 102
           L NSA VKALELRIG
Sbjct: 71  LPNSADVKALELRIG 64

The following BLAST results are available for this feature:
BLAST of Cucsat.G10249 vs.
Match NameE-valueIdentityDescription
BLAST of Cucsat.G10249 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8648488.11.87e-61100.00hypothetical protein Csa_008176 [Cucumis sativus] >KAE8653143.1 hypothetical pro... [more]
KAE8648279.11.08e-6099.02hypothetical protein Csa_017817 [Cucumis sativus][more]
TYK19608.11.72e-0448.00putative nucleobase-ascorbate transporter 10 [Cucumis melo var. makuwa][more]
KAA0033253.11.73e-0448.00putative nucleobase-ascorbate transporter 10 [Cucumis melo var. makuwa][more]
BLAST of Cucsat.G10249 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LX173.83e-22100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G408740 PE=4 SV=1[more]
A0A5D3D7R28.35e-0548.00Putative nucleobase-ascorbate transporter 10 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A5A7SS468.37e-0548.00Putative nucleobase-ascorbate transporter 10 OS=Cucumis melo var. makuwa OX=1194... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G10249.T1Cucsat.G10249.T1mRNA