Csor.00g305220 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTTCAAGTGCGGCGTTTCTCATCCTTGTAAGTTCTGTTTCTCTAATTTTAATTCGAGTTTCTACAACCTAGGCAGCCATGCGAGCTCTGCGAAACAATGTACTGCGAATCTCGTTTTTAGACACAATGAATTTCACTGTGAAGCATTTGTAATTATTGTAGAAAAACTACTAGATTTTGTAAACTGGAATTACGATAGAGGAGCAATGTTATAGGTCGAGTTTCTGCTGTGATTTGGTGATCAGCATGGATGTTCTTTGTTTCTGTATTTTCTGCTTCTGATTATGTGCGGTTATCCATCCTGTTTCTGTTCAGAATCTTCCGTGAGAGGAAAAAAGAAAGAAAAATTACATTGAAGCCTGAGAGTTCAGCAAACTTTGAGACTCCAGTTTCTGATTCAGTTAAGGAAATACAGGACAATGCAACGAACGGCCAAGATTTCATGGAAAAAGTAAGTCGTTGTTTTCTGGATGGCGGAGTTTGCCTGAATTCCATGAACTTATTCTTCATATGCTTATTCAAGTATTTCAGCTGTCTAATGAAGTTCAGAGTTCGTTGAGCTAATGATGAGCCTGAAACAGCTTGATTATTGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCGTTGCTTGACAAAACTATAGTTATCACGATTCAGTTTGGTTTGACAAGTAAAGCAAAAGGTTCTAGTTATAAGAAGTTCTCGCCAGTCTTATTTTATAATTCACCTAGAGGCGTACCTCCGAGGAGGCCATCTAGTTTGTGGAGATTATTGCTTGAAATTCGTGTCGAGCTTTCTGAACAAAGTAGATTCAAGTTTAGGTATATTTAGGTTTCATCAAATCTCTCCCATTCCTCTTCCTGTTTCACCATCATTCCACTTCTCGATGATTCCATTTGACATTTCTGGTATCTTTTAAGTAGTGAAGTTTGCAATGAAGTTTGCTGTGAAGTTTGGACCACATTTCCTAGACAAGAAGAAGCAATGAAAGTTTGCAAGAGAGCACACAGATGTTCATATTTTAGTTATCAAGATCACTTTAATGAACAAAGGAGATTTCTAGTTTCATCACACAGCAAGTTTTGGCAATGTTGTCATCAAATTTTAATAATACTTCGAGTAGAAAAATTATTTTTCCATCAGCCTAGCAAACGCTTCTGATGTCGTTCTAACTACGTTCTTAATTAATTTCAGGTACAAAAGCATGGATTCAAAATTTAGCCACCATTAAATTGATTCAAGAGGTGAGCTGAAAAAGTTCGAGTCAATGTGCCGATCATGTAATTGAATCTGTGCGAATCGTGTTCTCTTTTCTTTTTTCTACTGCACTTTCTCACTGTTCTATTCCAACGTTCAGGTTGCTCCGCGTCATGTTTACTTTGATATGGAGTACAAGATAAAAATCAGCGCGGGAAAAATTGGAGACGTAATGGTTGATTCCTAGATATCAGTTGTTCTAGAGGCCTCAAATTGAAAGTATTCGATTCAAGGAAGCTTTGACTGGATACTAGAGCTTGATTCCTCAAACAAGGTATATTTAGCAACAATTGGATTTAGGCTTCATCTTCTTGTCACTTGTGTTATTTCTTTGTTATCTCTTGAAATGTATACTTAATAGGTGAAACTAGGTTCTTGTAATTTCTTTTCTTTTCTTTTATTTTTTAGACATCGCATAGCTCAAATTTTCTTGGTATTAGTATAACATATCATTTTTATCCTTTTTATTAGTAACAAGTTCATAATAGTTAACAGGATTATTTCTGGTAATTCTACAGGAATATGATTACTTCATTTCTTAAAGAAAATTATTTTTGCTAGACAAGTTCAGATTAAAAATATATATATAATTTTGGTTTCCAACAGAAAAGAGGAAGTTGAAGGCACTTCGTAGTCATCATTATTTAGAAATTTTGCCAAAACTTTTCCAATATCGGAGAAATTGTTTTACTCCACCTTTTAAGAAAGTAGTTGCGCAGGATACATTATTCTGAGAAGGATCCTATTATTTACCTTGTACATACTTAATCGTAGTGTGAGGAAGACATGTTCATGGCATCCTTGGTCTGCAACGTCGATGCTGAGTGTGAGAAACTTCTGGTTTGCGTAACGGAATTACACTGCGTAAAGACATTGCAATTTGAAATGGAGGTACGATCAAGCTGAGTATCCATTTAGTTATGAAGCTGCTTTGAACAGTCCATGACATGTCGATTATACCTTTCAAATTGAATTATCTTATAAATCCAAATGTATCGTACCTTTATGTTTGATTTTAGTTATTCAACATTTGTTTACCTTTGAGGTTCTCTGGCCGCAGGAGATATGTAATTTTGGACGGTTTGTTGAATCAGCTGCCTCAACCGGAAATGTATCAGGTAATTTACCTGTATGAAAACCCCATGGGATAGACAAGTTTTGTACTTCGTGCGATCTACTTTCTTTGGTTGTTCTTTTTCTTTAAATCATCTGAGAATTTACTCATATCATCTTTCTTGCATGCAAAACATTGTGATCATCCATGTTTTCATCGTTCAGTGATGTATGTTGTCGACCTTACGATGGCTGCCTATTACCAAAGTGTCACGATCCAGATTGTGGAGGTGCTCAAATAAAACTTAATTGTCAACTTTTTTTCGGAAAAATATTTATTTGCAGCCATTGCTTGATTGAACTTATCACCCTACAGGTTACCGATCTCCACTGCGTCCAAGTCCAATTGATGCCATTCCTAATCCTTGGGTCTCCACGGATTCAGAACAGATATCAAATGACATAG ATGCTTCAAGTGCGGCGTTTCTCATCCTTAATCTTCCGTGAGAGGAAAAAAGAAAGAAAAATTACATTGAAGCCTGAGAGTTCAGCAAACTTTGAGACTCCAGTTTCTGATTCAGTTAAGGAAATACAGGACAATGCAACGAACGGCCAAGATTTCATGGAAAAATGTGAGGAAGACATGTTCATGGCATCCTTGGTCTGCAACGTCGATGCTGAGTGTGAGAAACTTCTGGTTTGCGTAACGGAATTACACTGCGTAAAGACATTGCAATTTGAAATGGAGGAGATATGTAATTTTGGACGGTTTGTTGAATCAGCTGCCTCAACCGGAAATGTATCAGTGATGTATGTTGTCGACCTTACGATGGCTGCCTATTACCAAAGTGTCACGATCCAGATTGTGGAGGTTACCGATCTCCACTGCGTCCAAGTCCAATTGATGCCATTCCTAATCCTTGGGTCTCCACGGATTCAGAACAGATATCAAATGACATAG ATGCTTCAAGTGCGGCGTTTCTCATCCTTAATCTTCCGTGAGAGGAAAAAAGAAAGAAAAATTACATTGAAGCCTGAGAGTTCAGCAAACTTTGAGACTCCAGTTTCTGATTCAGTTAAGGAAATACAGGACAATGCAACGAACGGCCAAGATTTCATGGAAAAATGTGAGGAAGACATGTTCATGGCATCCTTGGTCTGCAACGTCGATGCTGAGTGTGAGAAACTTCTGGTTTGCGTAACGGAATTACACTGCGTAAAGACATTGCAATTTGAAATGGAGGAGATATGTAATTTTGGACGGTTTGTTGAATCAGCTGCCTCAACCGGAAATGTATCAGTGATGTATGTTGTCGACCTTACGATGGCTGCCTATTACCAAAGTGTCACGATCCAGATTGTGGAGGTTACCGATCTCCACTGCGTCCAAGTCCAATTGATGCCATTCCTAATCCTTGGGTCTCCACGGATTCAGAACAGATATCAAATGACATAG MLQVRRFSSLIFRERKKERKITLKPESSANFETPVSDSVKEIQDNATNGQDFMEKCEEDMFMASLVCNVDAECEKLLVCVTELHCVKTLQFEMEEICNFGRFVESAASTGNVSVMYVVDLTMAAYYQSVTIQIVEVTDLHCVQVQLMPFLILGSPRIQNRYQMT Homology
BLAST of Csor.00g305220 vs. NCBI nr
Match: KAG6574204.1 (hypothetical protein SDJN03_28091, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 315 bits (807), Expect = 4.19e-108 Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0
BLAST of Csor.00g305220 vs. NCBI nr
Match: XP_016899008.1 (PREDICTED: DNA-directed primase/polymerase protein isoform X2 [Cucumis melo]) HSP 1 Score: 105 bits (261), Expect = 9.04e-23 Identity = 58/109 (53.21%), Postives = 66/109 (60.55%), Query Frame = 0
BLAST of Csor.00g305220 vs. NCBI nr
Match: KAG7013266.1 (hypothetical protein SDJN02_26024, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 95.9 bits (237), Expect = 1.50e-21 Identity = 62/120 (51.67%), Postives = 70/120 (58.33%), Query Frame = 0
BLAST of Csor.00g305220 vs. NCBI nr
Match: TYK23011.1 (DNA-directed primase/polymerase protein isoform X2 [Cucumis melo var. makuwa]) HSP 1 Score: 95.5 bits (236), Expect = 4.53e-21 Identity = 54/101 (53.47%), Postives = 60/101 (59.41%), Query Frame = 0
BLAST of Csor.00g305220 vs. NCBI nr
Match: KAG6576693.1 (DNA-directed primase/polymerase protein, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 91.7 bits (226), Expect = 5.05e-18 Identity = 61/141 (43.26%), Postives = 66/141 (46.81%), Query Frame = 0
BLAST of Csor.00g305220 vs. ExPASy TrEMBL
Match: A0A1S4DSS4 (DNA-directed primase/polymerase protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484132 PE=4 SV=1) HSP 1 Score: 105 bits (261), Expect = 4.38e-23 Identity = 58/109 (53.21%), Postives = 66/109 (60.55%), Query Frame = 0
BLAST of Csor.00g305220 vs. ExPASy TrEMBL
Match: A0A5D3DH78 (DNA-directed primase/polymerase protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G001190 PE=4 SV=1) HSP 1 Score: 95.5 bits (236), Expect = 2.19e-21 Identity = 54/101 (53.47%), Postives = 60/101 (59.41%), Query Frame = 0
BLAST of Csor.00g305220 vs. ExPASy TrEMBL
Match: A0A6J1E4L8 (DNA-directed primase/polymerase protein OS=Cucurbita moschata OX=3662 GN=LOC111430698 PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 2.48e-18 Identity = 61/141 (43.26%), Postives = 66/141 (46.81%), Query Frame = 0
BLAST of Csor.00g305220 vs. ExPASy TrEMBL
Match: A0A6J1JB70 (DNA-directed primase/polymerase protein-like OS=Cucurbita maxima OX=3661 GN=LOC111482880 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 2.16e-17 Identity = 59/141 (41.84%), Postives = 65/141 (46.10%), Query Frame = 0
BLAST of Csor.00g305220 vs. ExPASy TrEMBL
Match: A0A0A0L6Q1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G184000 PE=4 SV=1) HSP 1 Score: 88.6 bits (218), Expect = 2.95e-17 Identity = 58/141 (41.13%), Postives = 65/141 (46.10%), Query Frame = 0
BLAST of Csor.00g305220 vs. TAIR 10
Match: AT5G52800.1 (DNA primases ) HSP 1 Score: 52.8 bits (125), Expect = 3.1e-07 Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0
BLAST of Csor.00g305220 vs. TAIR 10
Match: AT5G52800.2 (DNA primases ) HSP 1 Score: 52.8 bits (125), Expect = 3.1e-07 Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0
BLAST of Csor.00g305220 vs. TAIR 10
Match: AT5G52800.3 (DNA primases ) HSP 1 Score: 52.8 bits (125), Expect = 3.1e-07 Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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