Csor.00g290640 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g290640
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr04: 16885695 .. 16888575 (+)
RNA-Seq ExpressionCsor.00g290640
SyntenyCsor.00g290640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGAGAATGCGAAGAGACGAAAAGAAGATTGCTGTAACAATGGACAAAGAACGGCTGATTTGTTGTCGTCGTTGTCGTCGTCGTCGTCGGCGTCGTCGACGACTCCATTGGCTGAGGAAGAATCTGTTCTACAGGTAAATCGCTCCTAGATTGAGATTTATGTACGGACGGCCTAATTCCTTGGCCTCACTGTCTTTCTAACCCGCTCTTCTAATTAACGGTATGTAACCTTTAATAAAATGTCTTGTTGGGAGCGTGTGCATAGACGTCTCCTTGGGCGCGTGGGAGTGCATGTAAGCCCTATTTCCACTCGATCAACCGTTAGAGAAATTTCACAAATTTTGGAACTCCAAACATGCCAAAAAGCTAGCTCAGTAAGGCATGCTTCACCAAGTAAGTAACCACACCAACTTTAGGCAAGTAATACTTACACAGGGATCGCTAGAACGTGCTAGCATGCGGGCATTCTTTACCTAAGGTAGTTAGAAAATGCATGTTTAGAACGTCATAAGGGCATTTTTGGATGAGTATGTGTTGTATATAATATTATGAAACAATTACTGTTATGCCCCTAGGTTGAGATTTCTAAGAATTTATTATGTAAAGCTAGAATACGAGTTGGATAATATTGATGAGTATGTTATGCTTGATGTAAAAAATGACCAATATGCCCCTATAGTGAAATTTGTGATTAATGTTGTATATGTTTTCTGGTGTGTTAGAAAGAAGGATGGACTATTGTGATCTGTATTCTGGGTGATGAATGGATGTAATCTCCCAATTGAGCTTAGTTGCTTGTATGTTTGCATGATATTGTATGTTTTAGTTCAAGGTGTTTGACTGTGTATTCTCTTTATAAAGCGTATTTGTCTGTACAGAGTAAGGGCATTAGAGTTAGGCTGGCTAGACGATGACCTAAAAGTTAGAACGCATCTAGTAGTATGAGCACCTTAGGATCGTGAGCGACGATTAGAGGGTTTAGGCCTTAGTGCTCCCAGACTAAGAAAGATTTCAGGAGTTCGAACAGAGCAGCCTGGAGCTAGAAGTCCATGTTAAGCCACCTAGTCATCCTAAGAATCTAATAGATCTCTTCAGCTCCTAGATACGACTAAGGTGAAGTTTAAATTATGGATTATGTGCTTAGGTGATCGATAGGAATATCTCCCTAGCAAAGCATGCATGAGAGAGCTCTATTAAGATTATGGTGCTACAGGTAGTGCGGTTTACATGTTGACCCAGGTCAGTACATATCTCGTAGACCTTGAACCCTAGGATCGTGAGCGATTAGAGGTTTTGACCCGTGTGCACCAAAAGATTGGTCTAGCCTGATGAACTAGCCCCGAATGTTCTAGAAACGAGAAATGAGATTTAAACCACTTAGACGTCCCTAAGAACCTAGTAAACCTCTACTAAATCTAAATACGACTAAGCAAGCTTAACATAATTTGAAACCACTTGAGAGAGATACAATGGACAACACGAGTAGTTATCAAGATGAGAACTCCTACTCTGTGTAGAAACTGGCCAAGGCCTGTAAGCCCGCCTTGAGAGGGGACGAGAGACTACATGAGTAGGCGATGTGAGGAATTACCACTATGTGTATAAACGGGTCAAGACTTGTAAACTTTTCTTGAGAGGGGACGAGAGACTATATGAGTGGGTAACATGATGAACTGCTATTGTATGTAGAAATGAATCAAAGTCCATAAACCTACCTTAAGATGGGTCGAGGGACTACATAAGTAGAAAACAAGAAGAACCACTAGTATATGTAGAATAAACCCGCCTTGAGAGGGGACGAGGGACTACATATGTAGATGATATCACGATCTTATATGGTTACAGTTACGAGAATCCTGAACTAGGCCAACTTCTTGGGGACCTAGGTTGCTTACTAGGTATATCTATATTGAAACGACCCAGGCCCACCGCTAGCAGATATTGTCCTCTTTGGGCTTTCCCTTTTGAGCTTCCCCTTAAGGCTTTAAAACGCGTCTGCTAAGGGAAGATTTCCACACCCTTATAAATGGTGGTTTGTTCTCCTCTCCAACCCATGTGGGACATCACAATCCACCCCCCTTCGGGGCCCAGCGTCCTCGTTGGCACTCTTTCCTTCCTCCAATCGATGTGGGACCGCCTCCAAATCTACCTTTGGGGCCCTACTGGCACACCGCCTTGTGTCTACTCCCCTTCGAGAAATAGCGAGAAGGCTGGCATATTGTTCGGAACTTGGTTCTGATACCATTTGTAACGACTCAGGCCCACTGCTACCAGATATTGTCTTTTTTGGGCTTTCCCTTTCGAGCTTCCCCTTAAGGCTTTAAAACGCGTTTGCTAGGGAAAGGTTTCCACACCTTTATAAATGGTGGTTTGTTCTCCTCCCCAACCAATGATGGACATCACATATATACTCATCCCTTCTCTGACTGCTGGTTGAGGCAGAGAGTGTTCGAGAGCTGTGCAGTTATCTAGAGCTGCGCAGGTATAAGTATCTAAGAAAAATAAAATTAAAATTGAAAATAAAGGAGGCAAAAATTAAATAAAAGTAGAGAGTATTTTTTATAATTTAACATTTTTAATTTTATAAATTTTAATTTTTGGACCTATAATATAATCCCATCGATATTCCGGACGCCCATTGCGCCGAAAAACCTCCGAGAGGAAGAAGAACAAGAACATCGCAGGAGTGCAAATTCCAGGTCGTTCCAACAATCTGTGCGTCGCTAAAAGATCGTTTCTCAGTTCATAACCTGCATGATCATCTGAGTTACTTCATCGCAAATTTCGCAGATTTTACTGCGAAACCTTCTCAGAATGAAAGAGCCCAATGGAACAACCCCAAAACGCTTCTGGAATCCAAGCTTCAGCTTCGTGTAA

mRNA sequence

ATGTTAGAGAATGCGAAGAGACGAAAAGAAGATTGCTGTAACAATGGACAAAGAACGGCTGATTTGTTGTCGTCGTTGTCGTCGTCGTCGTCGGCGTCGTCGACGACTCCATTGGCTGAGGAAGAATCTGTTCTACAGATTTTACTGCGAAACCTTCTCAGAATGAAAGAGCCCAATGGAACAACCCCAAAACGCTTCTGGAATCCAAGCTTCAGCTTCGTGTAA

Coding sequence (CDS)

ATGTTAGAGAATGCGAAGAGACGAAAAGAAGATTGCTGTAACAATGGACAAAGAACGGCTGATTTGTTGTCGTCGTTGTCGTCGTCGTCGTCGGCGTCGTCGACGACTCCATTGGCTGAGGAAGAATCTGTTCTACAGATTTTACTGCGAAACCTTCTCAGAATGAAAGAGCCCAATGGAACAACCCCAAAACGCTTCTGGAATCCAAGCTTCAGCTTCGTGTAA

Protein sequence

MLENAKRRKEDCCNNGQRTADLLSSLSSSSSASSTTPLAEEESVLQILLRNLLRMKEPNGTTPKRFWNPSFSFV
Homology
[Close]
BLAST of Csor.00g290640 vs. NCBI nr
Match: KAG6601986.1 (hypothetical protein SDJN03_07219, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 146 bits (368), Expect = 5.12e-44
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MLENAKRRKEDCCNNGQRTADLLSSLSSSSSASSTTPLAEEESVLQILLRNLLRMKEPNG 60
          MLENAKRRKEDCCNNGQRTADLLSSLSSSSSASSTTPLAEEESVLQILLRNLLRMKEPNG
Sbjct: 1  MLENAKRRKEDCCNNGQRTADLLSSLSSSSSASSTTPLAEEESVLQILLRNLLRMKEPNG 60

Query: 61 TTPKRFWNPSFSFV 74
          TTPKRFWNPSFSFV
Sbjct: 61 TTPKRFWNPSFSFV 74

[Close]
BLAST of Csor.00g290640 vs. NCBI nr
Match: KAG7032684.1 (hypothetical protein SDJN02_06734, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 134 bits (338), Expect = 2.18e-39
Identity = 72/78 (92.31%), Postives = 72/78 (92.31%), Query Frame = 0 

Query: 1  MLENAKRRKEDCCNNGQRTADLLSSLSSSSSASS----TTPLAEEESVLQILLRNLLRMK 60
          MLENAKRRKEDCCNNGQRTADLLSSLSSSS ASS    TTPLAEEESVLQILLR LLRMK
Sbjct: 1  MLENAKRRKEDCCNNGQRTADLLSSLSSSSLASSLASSTTPLAEEESVLQILLRILLRMK 60

Query: 61 EPNGTTPKRFWNPSFSFV 74
          EPNGTTPKRFWNPSFSFV
Sbjct: 61 EPNGTTPKRFWNPSFSFV 78

The following BLAST results are available for this feature:
BLAST of Csor.00g290640 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g290640 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6601986.15.12e-44100.00hypothetical protein SDJN03_07219, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7032684.12.18e-3992.31hypothetical protein SDJN02_06734, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Csor.00g290640 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g290640 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g290640.m01Csor.00g290640.m01mRNA