Csor.00g287150 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g287150
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr20: 15708336 .. 15708651 (-)
RNA-Seq Expression	Csor.00g287150
Synteny	Csor.00g287150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAAAATTGATAAGCTGAGCCGACAAGCTGATCGGAGCTGCCGAGAGCTGGCAGAAAGTCACCGGGAAGCTGCCGAGAACCCGTTGGGAGCGGTCAGCTCAGTGAATCTATGGAGGTGGCACATGTAAGGGATTGCACTGGACCGACAACGAGTTGTTTAGTCGAGGGACGAGTTTTCAAGGTTAGTTCGGGTTGTCGAGTTGATCTAGGTCACAAGTTGGCAAGGCAGGTTTAGGCTGCGGGCTGTATATGCGTGCGGGTTGCGCAGGTTATGGGTTTGGGCTGAGCTGGGTGCCCCTCCCCAAAGCTTAG

mRNA sequence

ATGGTAAAAATTGATAAGCTGAGCCGACAAGCTGATCGGAGCTGCCGAGAGCTGGCAGAAAGTCACCGGGAAGCTGCCGAGAACCCGTTGGGAGCGGTCAGCTCAGTGAATCTATGGAGGTGGCACATGTCACAAGTTGGCAAGGCAGGTTTAGGCTGCGGGCTGTATATGCGTGCGGGTTGCGCAGGTTATGGGTTTGGGCTGAGCTGGGTGCCCCTCCCCAAAGCTTAG

Coding sequence (CDS)

ATGGTAAAAATTGATAAGCTGAGCCGACAAGCTGATCGGAGCTGCCGAGAGCTGGCAGAAAGTCACCGGGAAGCTGCCGAGAACCCGTTGGGAGCGGTCAGCTCAGTGAATCTATGGAGGTGGCACATGTCACAAGTTGGCAAGGCAGGTTTAGGCTGCGGGCTGTATATGCGTGCGGGTTGCGCAGGTTATGGGTTTGGGCTGAGCTGGGTGCCCCTCCCCAAAGCTTAG

Protein sequence

MVKIDKLSRQADRSCRELAESHREAAENPLGAVSSVNLWRWHMSQVGKAGLGCGLYMRAGCAGYGFGLSWVPLPKA

Homology

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BLAST of Csor.00g287150 vs. NCBI nr
Match: KAG6571369.1 (hypothetical protein SDJN03_30284, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 160 bits (406), Expect = 9.35e-50
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MVKIDKLSRQADRSCRELAESHREAAENPLGAVSSVNLWRWHMSQVGKAGLGCGLYMRAG 60
          MVKIDKLSRQADRSCRELAESHREAAENPLGAVSSVNLWRWHMSQVGKAGLGCGLYMRAG
Sbjct: 1  MVKIDKLSRQADRSCRELAESHREAAENPLGAVSSVNLWRWHMSQVGKAGLGCGLYMRAG 60

Query: 61 CAGYGFGLSWVPLPKA 76
          CAGYGFGLSWVPLPKA
Sbjct: 61 CAGYGFGLSWVPLPKA 76

The following BLAST results are available for this feature:

BLAST of Csor.00g287150 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g287150 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6571369.1	9.35e-50	100.00	hypothetical protein SDJN03_30284, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g287150 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g287150 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g287150.m01	Csor.00g287150.m01	mRNA