Csor.00g287090 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g287090
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionRAP protein, putative
LocationCsor_Chr14: 8010546 .. 8011003 (-)
RNA-Seq ExpressionCsor.00g287090
SyntenyCsor.00g287090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCGAGATGACTGAGCTGTCCGAGAAGTCTGAGATGTCTGAGATGTTTGAGATATTTGAGATGTCTGGGATGTCTGAGATGTCTGAGATGACTAGGATGTCTGAGATATCTAAGATATCCGAGATGTTCGAGATTTCTGTGATGCTCTAGATGTCGGAGATGTCTGAGATGTTTGAGATGTCTTAGATGTCTGAGATGTCTGAGATGTAGGAGATGTCGGAGATGTCTAAGATGTCGGAGATGTCTTAGATGTTTTAGATGTTTGAGATGTCTGAGATGTCCTGATGTCTGGGATGTTCGAGATGTCTTAGATGTCTGGGATGTTTGAGATGTCGAATATGTCTGGGATCTCTGAGATTTTTGAGATTTCTGAGATGTTCGAGATGTCCGAGATGTCTAAGATGTTTGGGATGTCTGAGATATCTAAGATGTCTGAGATGTATGAGATTTTTTAG

mRNA sequence

ATGTCCGAGATGACTGAGCTGTCCGAGAAGTCTGAGATGTCTGAGATGTTTGAGATATTTGAGATGTCTGGGATGTCTGAGATGTCTGAGATGACTAGGATGTCTGAGATATCTAAGATATCCGAGATGTTCGAGATTTCTATGTCTGGGATGTTTGAGATGTCGAATATGTCTGGGATCTCTGAGATTTTTGAGATTTCTGAGATGTTCGAGATGTCCGAGATGTCTAAGATGTTTGGGATGTCTGAGATATCTAAGATGTCTGAGATGTATGAGATTTTTTAG

Coding sequence (CDS)

ATGTCCGAGATGACTGAGCTGTCCGAGAAGTCTGAGATGTCTGAGATGTTTGAGATATTTGAGATGTCTGGGATGTCTGAGATGTCTGAGATGACTAGGATGTCTGAGATATCTAAGATATCCGAGATGTTCGAGATTTCTATGTCTGGGATGTTTGAGATGTCGAATATGTCTGGGATCTCTGAGATTTTTGAGATTTCTGAGATGTTCGAGATGTCCGAGATGTCTAAGATGTTTGGGATGTCTGAGATATCTAAGATGTCTGAGATGTATGAGATTTTTTAG

Protein sequence

MSEMTELSEKSEMSEMFEIFEMSGMSEMSEMTRMSEISKISEMFEISMSGMFEMSNMSGISEIFEISEMFEMSEMSKMFGMSEISKMSEMYEIF
Homology
BLAST of Csor.00g287090 vs. NCBI nr
Match: KAG6571281.1 (hypothetical protein SDJN03_30196, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.4 bits (246), Expect = 3.78e-24
Identity = 75/133 (56.39%), Postives = 85/133 (63.91%), Query Frame = 0

Query: 1   MSEMTELSEKSEMSEMFEIFEMSGMSEMSEMTRMSEISKISEM----------------- 60
           MSEMTELSEKSEMSEMFEIFEMSGMSEMSEMTRMSEISKISEM                 
Sbjct: 1   MSEMTELSEKSEMSEMFEIFEMSGMSEMSEMTRMSEISKISEMRCRRCLRCRRCLRCFRC 60

Query: 61  ---------FEI--------SMSGMFEMSNMSGISEIFEISEMFEMSEMSKMFGM----- 93
                    +++          S M EMS MS ISE+FE+SEMF+MSEM +MF M     
Sbjct: 61  LRCLRCPDVWDVRDVLDVWDEKSEMSEMSEMSEISEMFEMSEMFDMSEMFEMFEMFEMFE 120

BLAST of Csor.00g287090 vs. NCBI nr
Match: KAG6603345.1 (hypothetical protein SDJN03_03954, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.7 bits (239), Expect = 1.55e-22
Identity = 64/94 (68.09%), Postives = 79/94 (84.04%), Query Frame = 0

Query: 1   MSEMTELSEKSEMSEMFEIFEMSGMSEMSEMTRMSEISKISEMFEIS-MSGMFEMSNMSG 60
           MSEM+E+SE SEMSEM E+FEMS MSEMSEM+ MSE+S++SEM E+S MS M EMS MS 
Sbjct: 73  MSEMSEMSEMSEMSEMSEMFEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSE 132

Query: 61  ISEIFEISEMFEMSEMSKMFGMSEISKMSEMYEI 93
           +S +FE+SEM EMSEMS+M  MSE+S+MSEM E+
Sbjct: 133 MSVMFEMSEMSEMSEMSEMSEMSEMSEMSEMSEM 166

BLAST of Csor.00g287090 vs. NCBI nr
Match: KAG6603334.1 (hypothetical protein SDJN03_03943, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.3 bits (238), Expect = 9.52e-22
Identity = 64/107 (59.81%), Postives = 82/107 (76.64%), Query Frame = 0

Query: 1   MSEMTELSEKSEMSEMFEIFEMSGMSEMSEMTRMSEISKISEMFEIS------------- 60
           MSE++E+SE SE+SEM EI EMS MSEMSEM+ MS++S++SEM+EIS             
Sbjct: 88  MSELSEMSEMSEISEMSEISEMSVMSEMSEMSEMSDMSEMSEMYEISERSEISERSEMSE 147

Query: 61  MSGMFEMSNMSGISEIFEISEMFEMSEMSKMFGMSEISKMSEMYEIF 94
           MS MFEMS MS +SE+FE+SEMFEM EMS+M  MSE+S+MSEM E++
Sbjct: 148 MSEMFEMSEMSEMSEMFEMSEMFEMFEMSEMSEMSEMSEMSEMSEMY 194

BLAST of Csor.00g287090 vs. NCBI nr
Match: KAG6571284.1 (hypothetical protein SDJN03_30199, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 91.3 bits (225), Expect = 3.16e-21
Identity = 69/127 (54.33%), Postives = 78/127 (61.42%), Query Frame = 0

Query: 1   MSEMTELSEKSEMSEMFEIFEMSGMSEMSEMTRMSEISKISEM----------------- 60
           MSEMTELSEKSEMSEMFEIFEM GMSEMSEMTRMSEISKISEM                 
Sbjct: 1   MSEMTELSEKSEMSEMFEIFEMFGMSEMSEMTRMSEISKISEMRCRRCLRCRRCLRCFRY 60

Query: 61  ---------------FEI--------SMSGMFEMSNMSGISEIFEISEMFEMSEMSKMFG 87
                          +++          S M EMS MS ISE+FE+SEMF+MSEM +MF 
Sbjct: 61  LRCLRCLRCLRCPDVWDVRDVLDVWDEKSEMSEMSEMSEISEMFEMSEMFDMSEMFEMFE 120

BLAST of Csor.00g287090 vs. NCBI nr
Match: KAG6603397.1 (hypothetical protein SDJN03_04006, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 3.09e-20
Identity = 60/91 (65.93%), Postives = 75/91 (82.42%), Query Frame = 0

Query: 1   MSEMTELSEKSEMSEMFEIFEMSGMSEMSEMTRMSEISKISEMFEIS-MSGMFEMSNMSG 60
           MSEM+E+SE SEMSEM E+ EMS MSEMSEM+ MSE+S++SEM E+S MS M EMS MS 
Sbjct: 43  MSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSEMSE 102

Query: 61  ISEIFEISEMFEMSEMSKMFGMSEISKMSEM 90
           +SE+ E+S M EM EMS+MF +SE+S+MSEM
Sbjct: 103 MSEMSEMSVMSEMPEMSEMFDISEMSEMSEM 133

BLAST of Csor.00g287090 vs. ExPASy TrEMBL
Match: A0A6P0R982 (Uncharacterized protein OS=Okeania sp. SIO3I5 OX=2607805 GN=F6K40_14360 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.73e-09
Identity = 39/92 (42.39%), Postives = 70/92 (76.09%), Query Frame = 0

Query: 2   SEMTELSEKSEMSEMFEIFEMSGMSEMSEMTRMSEISKISEMFEISMSGMFEMSNMSGIS 61
           SE++ELS   E+SE+ E+ E+SG+SE+SE+  +S +S++S + E+S      +S +SG+S
Sbjct: 134 SEVSELSGVLEVSELSEVLEVSGVSEVSEVLEVSGVSEVSGVSEVS-----GVSEVSGVS 193

Query: 62  EIFEISEMFEMSEMSKMFGMSEISKMSEMYEI 93
           E+  +SE+ E+SE+S++ G+SE+S++SE+ E+
Sbjct: 194 EVSGVSEVSEVSEVSEVSGVSEVSEVSEVSEV 220

BLAST of Csor.00g287090 vs. ExPASy TrEMBL
Match: A0A6P0RKI2 (Uncharacterized protein (Fragment) OS=Okeania sp. SIO3I5 OX=2607805 GN=F6K40_35880 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.03e-08
Identity = 37/90 (41.11%), Postives = 71/90 (78.89%), Query Frame = 0

Query: 2   SEMTELSEKSEMSEMFEIFEMSGMSEMSEMTRMSEISKISEMFEISMSGMFEMSNMSGIS 61
           SE++E+SE SE+SE+ E++ +  +SE+SE+  +SE+  +SE+ E+S     ++S +S +S
Sbjct: 38  SEVSEVSEVSEVSEVSEVWGVLEVSEVSEVWGVSEVWGVSEVSEVS-----QVSEVSQVS 97

Query: 62  EIFEISEMFEMSEMSKMFGMSEISKMSEMY 91
           E+ ++SE+ E+SE+S+++G+SE+S++SEM+
Sbjct: 98  EVSQVSEVSEVSEVSEVWGVSEVSEVSEMW 122

BLAST of Csor.00g287090 vs. ExPASy TrEMBL
Match: A0A6J1EW04 (uncharacterized protein LOC111438534 OS=Cucurbita moschata OX=3662 GN=LOC111438534 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.23e-07
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = 0

Query: 1   MSEMTELSEKSEMSEMFEIFEMSGMSEMSEMTRMSEISKISEMFEISMSGMFEMSNMSGI 60
           MSEM E+ E SEM+ M  +  MS +S M +M+ MSE+S +SEM  +S+  MF+MS MS +
Sbjct: 66  MSEMPEMHEISEMTLMCMMSVMSAVSAMPKMSGMSEMSLMSEMSVMSL--MFKMSEMSAM 125

Query: 61  SEIFEISEMFEMSEMSKMFGMSEISKMSEMYEIF 94
           S++  + EMFEM  MS M  MS +S MS M+E+F
Sbjct: 126 SKMSLMPEMFEMPLMSMMSVMSVMSVMSIMFEMF 157

BLAST of Csor.00g287090 vs. ExPASy TrEMBL
Match: A0A6P0RAG7 (Uncharacterized protein OS=Okeania sp. SIO3I5 OX=2607805 GN=F6K40_14380 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.62e-07
Identity = 39/88 (44.32%), Postives = 67/88 (76.14%), Query Frame = 0

Query: 7   LSEKSEMSEMFEIFEMSGMSEMSEMTRMSEISKISEMFEIS-MSGMFEMSNMSGISEIFE 66
           +SE SE+SE+ E+ E+S +SE+SE++ +SE+S+ SE+ E S +S + E+S  SG+SE+ E
Sbjct: 121 VSEFSELSEVSELSEVSELSEVSELSELSEVSEPSEVSEPSEVSELSEVSEPSGVSELSE 180

Query: 67  ISEMFEMSEMSKMFGMSEISKMSEMYEI 93
           +SE+ E S +S +  +SE+S++SE+ E+
Sbjct: 181 VSELSEPSGVSGVSELSELSQVSELSEV 208

BLAST of Csor.00g287090 vs. ExPASy TrEMBL
Match: A0A6P0RI57 (Uncharacterized protein (Fragment) OS=Okeania sp. SIO3I5 OX=2607805 GN=F6K40_31780 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.26e-07
Identity = 35/91 (38.46%), Postives = 71/91 (78.02%), Query Frame = 0

Query: 3   EMTELSEKSEMSEMFEIFEMSGMSEMSEMTRMSEISKISEMFEISMSGMFEMSNMSGISE 62
           E++E+ E SE+SE++E+ E+  +SE+SE+  +SE+S++SE++ +S     E+S + G+SE
Sbjct: 30  EVSEVLEVSEVSELWEVSEVLEVSEVSELWEVSEVSEVSELWGVS-----EVSELWGVSE 89

Query: 63  IFEISEMFEMSEMSKMFGMSEISKMSEMYEI 93
           ++ +SE+   SE+S+++G+SE+S++SE++ +
Sbjct: 90  LWGVSEV---SEVSELWGVSEVSEVSELWGV 112

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6571281.13.78e-2456.39hypothetical protein SDJN03_30196, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603345.11.55e-2268.09hypothetical protein SDJN03_03954, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603334.19.52e-2259.81hypothetical protein SDJN03_03943, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6571284.13.16e-2154.33hypothetical protein SDJN03_30199, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6603397.13.09e-2065.93hypothetical protein SDJN03_04006, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A6P0R9825.73e-0942.39Uncharacterized protein OS=Okeania sp. SIO3I5 OX=2607805 GN=F6K40_14360 PE=4 SV=... [more]
A0A6P0RKI22.03e-0841.11Uncharacterized protein (Fragment) OS=Okeania sp. SIO3I5 OX=2607805 GN=F6K40_358... [more]
A0A6J1EW041.23e-0748.94uncharacterized protein LOC111438534 OS=Cucurbita moschata OX=3662 GN=LOC1114385... [more]
A0A6P0RAG74.62e-0744.32Uncharacterized protein OS=Okeania sp. SIO3I5 OX=2607805 GN=F6K40_14380 PE=4 SV=... [more]
A0A6P0RI575.26e-0738.46Uncharacterized protein (Fragment) OS=Okeania sp. SIO3I5 OX=2607805 GN=F6K40_317... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g287090.m01Csor.00g287090.m01mRNA