Csor.00g272990 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSsinglepolypeptidestart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAAGGCAAATTTTGAGAAAAAGAAAAAGGGTTCTTTCCCTTGAACCAAACAAACTTGCTTACACCATGTTTGCAAGAAACTATGTCAAATATTTGATGACATCTTTACCCAAAATCTCTCATCATCATCAACAACATCAAGAACAAAGTTTTCAGAAGCTTGTGAAGTTTGAGGTTGACATGGCAATGGCTCAATCAGCAACTGAGTTTTCATGGGGCAATGCTCTTAAAAAGAAGCTTCTTCAAAGAGAAGATGGCAATGGGAGTAATGGGTTTGGTCTCTCTCTCCAAAGGGTGAAATTTGCTCGAGAAAATTTAGAGAGAGAAGACGAAGAACACGAAGAACGCGAAGAACACGAAGAACGAAAGATAGAAAATGGGCTGATGAAGCTGAGAAAAATCGTCCCGGGTGGTTCAAATGGAGAATTGGAAGAAGATGATTTGTTCAAACAAACTGAGAGTTATATAAAATGTCTTGAGTTGCAGGTCAATGTTCTTAGATGTTTGGTTGATACAAACACAAATTAA ATGGGAAGGCAAATTTTGAGAAAAAGAAAAAGGGTTCTTTCCCTTGAACCAAACAAACTTGCTTACACCATGTTTGCAAGAAACTATGTCAAATATTTGATGACATCTTTACCCAAAATCTCTCATCATCATCAACAACATCAAGAACAAAGTTTTCAGAAGCTTGTGAAGTTTGAGGTTGACATGGCAATGGCTCAATCAGCAACTGAGTTTTCATGGGGCAATGCTCTTAAAAAGAAGCTTCTTCAAAGAGAAGATGGCAATGGGAGTAATGGGTTTGGTCTCTCTCTCCAAAGGGTGAAATTTGCTCGAGAAAATTTAGAGAGAGAAGACGAAGAACACGAAGAACGCGAAGAACACGAAGAACGAAAGATAGAAAATGGGCTGATGAAGCTGAGAAAAATCGTCCCGGGTGGTTCAAATGGAGAATTGGAAGAAGATGATTTGTTCAAACAAACTGAGAGTTATATAAAATGTCTTGAGTTGCAGGTCAATGTTCTTAGATGTTTGGTTGATACAAACACAAATTAA ATGGGAAGGCAAATTTTGAGAAAAAGAAAAAGGGTTCTTTCCCTTGAACCAAACAAACTTGCTTACACCATGTTTGCAAGAAACTATGTCAAATATTTGATGACATCTTTACCCAAAATCTCTCATCATCATCAACAACATCAAGAACAAAGTTTTCAGAAGCTTGTGAAGTTTGAGGTTGACATGGCAATGGCTCAATCAGCAACTGAGTTTTCATGGGGCAATGCTCTTAAAAAGAAGCTTCTTCAAAGAGAAGATGGCAATGGGAGTAATGGGTTTGGTCTCTCTCTCCAAAGGGTGAAATTTGCTCGAGAAAATTTAGAGAGAGAAGACGAAGAACACGAAGAACGCGAAGAACACGAAGAACGAAAGATAGAAAATGGGCTGATGAAGCTGAGAAAAATCGTCCCGGGTGGTTCAAATGGAGAATTGGAAGAAGATGATTTGTTCAAACAAACTGAGAGTTATATAAAATGTCTTGAGTTGCAGGTCAATGTTCTTAGATGTTTGGTTGATACAAACACAAATTAA MGRQILRKRKRVLSLEPNKLAYTMFARNYVKYLMTSLPKISHHHQQHQEQSFQKLVKFEVDMAMAQSATEFSWGNALKKKLLQREDGNGSNGFGLSLQRVKFARENLEREDEEHEEREEHEERKIENGLMKLRKIVPGGSNGELEEDDLFKQTESYIKCLELQVNVLRCLVDTNTN Homology
BLAST of Csor.00g272990 vs. ExPASy Swiss-Prot
Match: Q9SUM5 (Transcription factor bHLH146 OS=Arabidopsis thaliana OX=3702 GN=BHLH146 PE=2 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 1.2e-17 Identity = 65/175 (37.14%), Postives = 99/175 (56.57%), Query Frame = 0
BLAST of Csor.00g272990 vs. ExPASy Swiss-Prot
Match: Q9SKX1 (Transcription factor IBH1 OS=Arabidopsis thaliana OX=3702 GN=IBH1 PE=1 SV=1) HSP 1 Score: 46.6 bits (109), Expect = 3.4e-04 Identity = 37/113 (32.74%), Postives = 55/113 (48.67%), Query Frame = 0
BLAST of Csor.00g272990 vs. NCBI nr
Match: KAG6586090.1 (Transcription factor basic helix-loop-helix 146, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 342 bits (876), Expect = 3.13e-118 Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
BLAST of Csor.00g272990 vs. NCBI nr
Match: XP_022938205.1 (transcription factor bHLH146-like [Cucurbita moschata]) HSP 1 Score: 339 bits (870), Expect = 2.57e-117 Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0
BLAST of Csor.00g272990 vs. NCBI nr
Match: XP_022969610.1 (transcription factor bHLH146-like [Cucurbita maxima]) HSP 1 Score: 316 bits (810), Expect = 3.87e-108 Identity = 167/179 (93.30%), Postives = 171/179 (95.53%), Query Frame = 0
BLAST of Csor.00g272990 vs. NCBI nr
Match: XP_023538247.1 (transcription factor bHLH146-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 316 bits (809), Expect = 4.62e-108 Identity = 165/176 (93.75%), Postives = 169/176 (96.02%), Query Frame = 0
BLAST of Csor.00g272990 vs. NCBI nr
Match: KAG7020915.1 (hypothetical protein SDJN02_17603, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 233 bits (594), Expect = 5.30e-76 Identity = 119/122 (97.54%), Postives = 121/122 (99.18%), Query Frame = 0
BLAST of Csor.00g272990 vs. ExPASy TrEMBL
Match: A0A6J1FJ33 (transcription factor bHLH146-like OS=Cucurbita moschata OX=3662 GN=LOC111444354 PE=4 SV=1) HSP 1 Score: 339 bits (870), Expect = 1.24e-117 Identity = 174/176 (98.86%), Postives = 176/176 (100.00%), Query Frame = 0
BLAST of Csor.00g272990 vs. ExPASy TrEMBL
Match: A0A6J1I0E6 (transcription factor bHLH146-like OS=Cucurbita maxima OX=3661 GN=LOC111468586 PE=4 SV=1) HSP 1 Score: 316 bits (810), Expect = 1.88e-108 Identity = 167/179 (93.30%), Postives = 171/179 (95.53%), Query Frame = 0
BLAST of Csor.00g272990 vs. ExPASy TrEMBL
Match: A0A1S4DZN3 (uncharacterized protein At4g30180 OS=Cucumis melo OX=3656 GN=LOC103492789 PE=4 SV=1) HSP 1 Score: 217 bits (553), Expect = 3.96e-69 Identity = 128/192 (66.67%), Postives = 151/192 (78.65%), Query Frame = 0
BLAST of Csor.00g272990 vs. ExPASy TrEMBL
Match: A0A6J1DIU0 (transcription factor bHLH146 OS=Momordica charantia OX=3673 GN=LOC111020869 PE=4 SV=1) HSP 1 Score: 213 bits (543), Expect = 7.04e-68 Identity = 122/185 (65.95%), Postives = 144/185 (77.84%), Query Frame = 0
BLAST of Csor.00g272990 vs. ExPASy TrEMBL
Match: A0A0A0LJA7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060350 PE=4 SV=1) HSP 1 Score: 212 bits (539), Expect = 4.37e-67 Identity = 126/186 (67.74%), Postives = 150/186 (80.65%), Query Frame = 0
BLAST of Csor.00g272990 vs. TAIR 10
Match: AT2G18969.1 (BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;transcription regulators (TAIR:AT4G30180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 103.2 bits (256), Expect = 2.2e-22 Identity = 73/184 (39.67%), Postives = 110/184 (59.78%), Query Frame = 0
BLAST of Csor.00g272990 vs. TAIR 10
Match: AT4G30180.1 (sequence-specific DNA binding transcription factors;transcription regulators ) HSP 1 Score: 91.3 bits (225), Expect = 8.5e-19 Identity = 65/175 (37.14%), Postives = 99/175 (56.57%), Query Frame = 0
BLAST of Csor.00g272990 vs. TAIR 10
Match: AT2G43060.1 (ILI1 binding bHLH 1 ) HSP 1 Score: 46.6 bits (109), Expect = 2.4e-05 Identity = 37/113 (32.74%), Postives = 55/113 (48.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|