Csor.00g272940 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g272940
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	60S acidic ribosomal protein P3
Location	Csor_Chr12: 12933499 .. 12934564 (+)
RNA-Seq Expression	Csor.00g272940
Synteny	Csor.00g272940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTTTTCACCTTCGTTTGTCGGAAATCCGGTGGCGAGTGGACCGCCAATCAGTACTCAGGCGACCTTGAAGGTTCCGCCGCTTCAACCTATGATCTCCAGAGGAAGCTCGTTGCGTCTGCTCTCTCTGTCGATTCCTCCGGTGGCGTTCAGTCCTCATTCTCTTACGTTTCTCCCAGCTCCGCCGTTTTTCAGGTATTCTTTGTTTTCTCTGCTGGATATTCGCTGAAATAGGCGAAAACTTGTCGAGATTATCGATACATGTTCTGTTTTACCCGTTTGTCTAGTGGATTCTTCGAATGTATTTGATTTTATTGCTTGATTGTTCTCGATCTCACGCACTTACTCTTTAATGTTTGATTTTGTTAATCTCAGTATTTAACTGATTGTGTTTTTTTTCCGTCGATTTGCAATGACGGGATTATCCTTACCTAGTTTTTTCCTTTTTGATGTGCGAGTGTTACTTTAAGTTCGATCTGTAGGGTAATGTTGTTCATTTGCGAATATGGATTTTGATTATATAATCCACTAATATGAATTTGTTCAACCAGCAGACCTCCGAATTCTTTCTCAATATATGAACACATTTTGCATTTTGAATCATTTCATTGCTGGCAATCGTATTTCTAGTATGTTCATTGCTGAGTTTCTTGATTGGTTACAAGTTATCTGCATTCACCCTAACCTTTACATTCAATTTTAACTTCTTTGAATAAGAAAATCTGATATTGTGTGATTCCTTGTTGGGAAGCTTTCTTGCAAAGTATTTAGAAAAGCTTGGTTTAAGTGACGGGTCCTTTGAATGAACTCTATTTATGATATCTCCTGAATTATCTGACTGCATTCCTCCCTGTTATTGCCTACCATGTACGCCTACCCTAAACCTTAATTTTTTCAGGTGATCATTGGTGGTGCTAGTGGCGGTGGTATCATTAGTGGTGGAGCAGCGGCAGCCGCCCCTGCTGGAGGAGCTGCACCAGCTGCAGAAGCCCCAGCTCCAGCGAAGGAGGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCTTTTCACTTTTTGATTAA

mRNA sequence

ATGGGAGTTTTCACCTTCGTTTGTCGGAAATCCGGTGGCGAGTGGACCGCCAATCAGTACTCAGGCGACCTTGAAGGTTCCGCCGCTTCAACCTATGATCTCCAGAGGAAGCTCGTTGCGTCTGCTCTCTCTGTCGATTCCTCCGGTGGCGTTCAGTCCTCATTCTCTTACGTTTCTCCCAGCTCCGCCGTTTTTCAGGTGATCATTGGTGGTGCTAGTGGCGGTGGTATCATTAGTGGTGGAGCAGCGGCAGCCGCCCCTGCTGGAGGAGCTGCACCAGCTGCAGAAGCCCCAGCTCCAGCGAAGGAGGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCTTTTCACTTTTTGATTAA

Coding sequence (CDS)

ATGGGAGTTTTCACCTTCGTTTGTCGGAAATCCGGTGGCGAGTGGACCGCCAATCAGTACTCAGGCGACCTTGAAGGTTCCGCCGCTTCAACCTATGATCTCCAGAGGAAGCTCGTTGCGTCTGCTCTCTCTGTCGATTCCTCCGGTGGCGTTCAGTCCTCATTCTCTTACGTTTCTCCCAGCTCCGCCGTTTTTCAGGTGATCATTGGTGGTGCTAGTGGCGGTGGTATCATTAGTGGTGGAGCAGCGGCAGCCGCCCCTGCTGGAGGAGCTGCACCAGCTGCAGAAGCCCCAGCTCCAGCGAAGGAGGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCTTTTCACTTTTTGATTAA

Protein sequence

MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD

Homology

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BLAST of Csor.00g272940 vs. ExPASy Swiss-Prot
Match: P56724 (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 135.6 bits (340), Expect = 3.8e-31
Identity = 81/120 (67.50%), Postives = 91/120 (75.83%), Query Frame = 0


Query: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
           MGV+TFVCR SG EWTA Q  G+LE SAA+ Y+LQR+LVA+A + DS+ GVQSSFS VSP
Sbjct: 1   MGVYTFVCRSSGDEWTAKQLKGELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSP 60

Query: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD 120
           SSAVFQVIIG   GG  I GGAAA A +GGAA  A      KEE KEES +DDLGFSLFD
Sbjct: 61  SSAVFQVIIGAVGGGAAIGGGAAAGAASGGAAAEAPKAEEKKEEEKEES-EDDLGFSLFD 119

[Close]

BLAST of Csor.00g272940 vs. ExPASy Swiss-Prot
Match: Q9LVC9 (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.4e-30
Identity = 74/119 (62.18%), Postives = 87/119 (73.11%), Query Frame = 0


Query: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
           MGVF+FVC+  GGEWTA Q+ GDLE SA+STYDLQRKLV +ALS DSSGGVQSSFS VSP
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLF 120
           +SAVF V+IGG  GGG  +GG AAA   GG   AA      K++ + E ++ D GF LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEEEGDFGFDLF 119

[Close]

BLAST of Csor.00g272940 vs. ExPASy Swiss-Prot
Match: O24413 (60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3)

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-29
Identity = 75/121 (61.98%), Postives = 93/121 (76.86%), Query Frame = 0


Query: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
           MGV+TFVCR +GGEWTA Q+SG++E SAA+ Y+LQR+LVA+A + DS  GVQSSFS V+P
Sbjct: 1   MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTP 60

Query: 61  SSAVFQVIIGGASGGG-IISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLF 120
           SSAVFQVI+G   GG  ++SGG    A A G A AAEAP   K+E ++E  DDD+GFSLF
Sbjct: 61  SSAVFQVIVGAVGGGAMMVSGGGGGGAAASGGA-AAEAPKEEKKEEEKEESDDDMGFSLF 120

[Close]

BLAST of Csor.00g272940 vs. ExPASy Swiss-Prot
Match: Q9SVZ6 (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.3e-28
Identity = 76/121 (62.81%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
           MGVFTFVC+  GG W+A Q+ G+LE SA+STY+LQRKLV  +LS DSSGGVQSSFS VSP
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDD--DLGFSL 120
           +SAVFQVI+GG  GGG  +GGAA++   GGA  AA AP    E+ KEES+++  D GF L
Sbjct: 61  TSAVFQVIVGGGGGGGFSAGGAASS--GGGAGEAAAAP-KEDEKKKEESEEEEGDFGFDL 118

[Close]

BLAST of Csor.00g272940 vs. NCBI nr
Match: XP_023537756.1 (60S acidic ribosomal protein P3 [Cucurbita pepo subsp. pepo] >KAG6586095.1 60S acidic ribosomal protein P3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020919.1 60S acidic ribosomal protein P3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213 bits (542), Expect = 4.06e-69
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
           MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP
Sbjct: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60

Query: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD 120
           SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD
Sbjct: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD 120

[Close]

BLAST of Csor.00g272940 vs. NCBI nr
Match: XP_022937950.1 (60S acidic ribosomal protein P3 [Cucurbita moschata])

HSP 1 Score: 209 bits (533), Expect = 9.56e-68
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
           MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSG VQSSFSYVSP
Sbjct: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSP 60

Query: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD 120
           SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD
Sbjct: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD 120

[Close]

BLAST of Csor.00g272940 vs. NCBI nr
Match: XP_022969611.1 (60S acidic ribosomal protein P3-like [Cucurbita maxima])

HSP 1 Score: 204 bits (520), Expect = 9.18e-66
Identity = 117/120 (97.50%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
           MGVFTFVCRKSGGEWTANQYSG LEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP
Sbjct: 1   MGVFTFVCRKSGGEWTANQYSGVLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60

Query: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD 120
           SSAVFQVIIGGASGGGIISGG AAAAPAGGAAPAAEAPA AKEEVKEESDDDDLGFSLFD
Sbjct: 61  SSAVFQVIIGGASGGGIISGGEAAAAPAGGAAPAAEAPAAAKEEVKEESDDDDLGFSLFD 120

[Close]

BLAST of Csor.00g272940 vs. NCBI nr
Match: XP_004148320.1 (60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypothetical protein Csa_021210 [Cucumis sativus])

HSP 1 Score: 179 bits (453), Expect = 1.55e-55
Identity = 102/121 (84.30%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
           MGVFTFVCR SGG+WTANQYSGDLEGSA STY+LQRKLV SALSVDSSGGVQSSFS+++P
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAA-EAPAPAKEEVKEESDDDDLGFSLF 120
           SSAVFQVI+GG SGGG  +GG AAAAPAGGAAPAA EAPA  KEEVKEESDD+DLG SLF
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGGGAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

[Close]

BLAST of Csor.00g272940 vs. NCBI nr
Match: XP_022929782.1 (60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S acidic ribosomal protein P3-2-like [Cucurbita maxima] >XP_023521367.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >XP_023545674.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >KAG6598882.1 60S acidic ribosomal protein P3-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029833.1 60S acidic ribosomal protein P3-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 178 bits (451), Expect = 3.13e-55
Identity = 102/121 (84.30%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
           MGVFTF+CR SGG+WTANQYSGDLEGSA STYDLQR LV + LSVD SGGVQSSFSYV+P
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAA-EAPAPAKEEVKEESDDDDLGFSLF 120
           +SAVFQVIIGG+SGGG I GG AAAAPAGG APAA EAPA  KEEVKEESDDDDLGFSLF
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120

[Close]

BLAST of Csor.00g272940 vs. ExPASy TrEMBL
Match: A0A6J1FI91 (60S acidic ribosomal protein P3 OS=Cucurbita moschata OX=3662 GN=LOC111444187 PE=4 SV=1)

HSP 1 Score: 209 bits (533), Expect = 4.63e-68
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
           MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSG VQSSFSYVSP
Sbjct: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGCVQSSFSYVSP 60

Query: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD 120
           SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD
Sbjct: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD 120

[Close]

BLAST of Csor.00g272940 vs. ExPASy TrEMBL
Match: A0A6J1HYA3 (60S acidic ribosomal protein P3-like OS=Cucurbita maxima OX=3661 GN=LOC111468587 PE=4 SV=1)

HSP 1 Score: 204 bits (520), Expect = 4.45e-66
Identity = 117/120 (97.50%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
           MGVFTFVCRKSGGEWTANQYSG LEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP
Sbjct: 1   MGVFTFVCRKSGGEWTANQYSGVLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60

Query: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD 120
           SSAVFQVIIGGASGGGIISGG AAAAPAGGAAPAAEAPA AKEEVKEESDDDDLGFSLFD
Sbjct: 61  SSAVFQVIIGGASGGGIISGGEAAAAPAGGAAPAAEAPAAAKEEVKEESDDDDLGFSLFD 120

[Close]

BLAST of Csor.00g272940 vs. ExPASy TrEMBL
Match: A0A0A0LJB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1)

HSP 1 Score: 179 bits (453), Expect = 7.50e-56
Identity = 102/121 (84.30%), Postives = 110/121 (90.91%), Query Frame = 0


Query: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
           MGVFTFVCR SGG+WTANQYSGDLEGSA STY+LQRKLV SALSVDSSGGVQSSFS+++P
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAA-EAPAPAKEEVKEESDDDDLGFSLF 120
           SSAVFQVI+GG SGGG  +GG AAAAPAGGAAPAA EAPA  KEEVKEESDD+DLG SLF
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGGGAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSLF 120

[Close]

BLAST of Csor.00g272940 vs. ExPASy TrEMBL
Match: A0A6J1KB28 (60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC111492258 PE=4 SV=1)

HSP 1 Score: 178 bits (451), Expect = 1.51e-55
Identity = 102/121 (84.30%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
           MGVFTF+CR SGG+WTANQYSGDLEGSA STYDLQR LV + LSVD SGGVQSSFSYV+P
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAA-EAPAPAKEEVKEESDDDDLGFSLF 120
           +SAVFQVIIGG+SGGG I GG AAAAPAGG APAA EAPA  KEEVKEESDDDDLGFSLF
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120

[Close]

BLAST of Csor.00g272940 vs. ExPASy TrEMBL
Match: A0A6J1ENN1 (60S acidic ribosomal protein P3-2-like OS=Cucurbita moschata OX=3662 GN=LOC111436268 PE=4 SV=1)

HSP 1 Score: 178 bits (451), Expect = 1.51e-55
Identity = 102/121 (84.30%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
           MGVFTF+CR SGG+WTANQYSGDLEGSA STYDLQR LV + LSVD SGGVQSSFSYV+P
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAA-EAPAPAKEEVKEESDDDDLGFSLF 120
           +SAVFQVIIGG+SGGG I GG AAAAPAGG APAA EAPA  KEEVKEESDDDDLGFSLF
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSLF 120

[Close]

BLAST of Csor.00g272940 vs. TAIR 10
Match: AT5G57290.1 (60S acidic ribosomal protein family )

HSP 1 Score: 132.9 bits (333), Expect = 1.7e-31
Identity = 74/119 (62.18%), Postives = 87/119 (73.11%), Query Frame = 0


Query: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
           MGVF+FVC+  GGEWTA Q+ GDLE SA+STYDLQRKLV +ALS DSSGGVQSSFS VSP
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLF 120
           +SAVF V+IGG  GGG  +GG AAA   GG   AA      K++ + E ++ D GF LF
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEEEGDFGFDLF 119

[Close]

BLAST of Csor.00g272940 vs. TAIR 10
Match: AT5G57290.3 (60S acidic ribosomal protein family )

HSP 1 Score: 129.0 bits (323), Expect = 2.5e-30
Identity = 74/119 (62.18%), Postives = 87/119 (73.11%), Query Frame = 0


Query: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
           MGVF+FVC+  GGEWTA Q+ GDLE SA+STYDLQRKLV +ALS DSSGGVQSSFS VSP
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLF 120
           +SAVF V+IGG  GGG  +GG AAA   GG   AA      K++ + E ++ D GF LF
Sbjct: 61  TSAVF-VVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEEEGDFGFDLF 118

[Close]

BLAST of Csor.00g272940 vs. TAIR 10
Match: AT4G25890.1 (60S acidic ribosomal protein family )

HSP 1 Score: 126.3 bits (316), Expect = 1.6e-29
Identity = 76/121 (62.81%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 1   MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
           MGVFTFVC+  GG W+A Q+ G+LE SA+STY+LQRKLV  +LS DSSGGVQSSFS VSP
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  SSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDD--DLGFSL 120
           +SAVFQVI+GG  GGG  +GGAA++   GGA  AA AP    E+ KEES+++  D GF L
Sbjct: 61  TSAVFQVIVGGGGGGGFSAGGAASS--GGGAGEAAAAP-KEDEKKKEESEEEEGDFGFDL 118

[Close]

BLAST of Csor.00g272940 vs. TAIR 10
Match: AT5G57290.2 (60S acidic ribosomal protein family )

HSP 1 Score: 118.2 bits (295), Expect = 4.4e-27
Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 1  MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSP 60
          MGVF+FVC+  GGEWTA Q+ GDLE SA+STYDLQRKLV +ALS DSSGGVQSSFS VSP
Sbjct: 1  MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61 SSAVFQVIIGGASGGGIISGG 82
          +SAVF V+IGG  GGG  +GG
Sbjct: 61 TSAVFVVVIGGGGGGGFAAGG 81

The following BLAST results are available for this feature:

BLAST of Csor.00g272940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P56724	3.8e-31	67.50	60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06...	[more]
Q9LVC9	2.4e-30	62.18	60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 ...	[more]
O24413	2.7e-29	61.98	60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3	[more]
Q9SVZ6	2.3e-28	62.81	60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 ...	[more]

BLAST of Csor.00g272940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023537756.1	4.06e-69	100.00	60S acidic ribosomal protein P3 [Cucurbita pepo subsp. pepo] >KAG6586095.1 60S a...	[more]
XP_022937950.1	9.56e-68	99.17	60S acidic ribosomal protein P3 [Cucurbita moschata]	[more]
XP_022969611.1	9.18e-66	97.50	60S acidic ribosomal protein P3-like [Cucurbita maxima]	[more]
XP_004148320.1	1.55e-55	84.30	60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypothetical pro...	[more]
XP_022929782.1	3.13e-55	84.30	60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S ...	[more]

BLAST of Csor.00g272940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FI91	4.63e-68	99.17	60S acidic ribosomal protein P3 OS=Cucurbita moschata OX=3662 GN=LOC111444187 PE...	[more]
A0A6J1HYA3	4.45e-66	97.50	60S acidic ribosomal protein P3-like OS=Cucurbita maxima OX=3661 GN=LOC111468587...	[more]
A0A0A0LJB2	7.50e-56	84.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1	[more]
A0A6J1KB28	1.51e-55	84.30	60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC1114922...	[more]
A0A6J1ENN1	1.51e-55	84.30	60S acidic ribosomal protein P3-2-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]

BLAST of Csor.00g272940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57290.1	1.7e-31	62.18	60S acidic ribosomal protein family	[more]
AT5G57290.3	2.5e-30	62.18	60S acidic ribosomal protein family	[more]
AT4G25890.1	1.6e-29	62.81	60S acidic ribosomal protein family	[more]
AT5G57290.2	4.4e-27	74.07	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 70..119 e-value: 4.3E-11 score: 43.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..120
None	No IPR available	PANTHER	PTHR47207:SF2	60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED	coord: 1..120
IPR044252	60S acidic ribosomal protein P3-like	PANTHER	PTHR47207	60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED	coord: 1..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g272940.m01	Csor.00g272940.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome