Csor.00g272940 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintronterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGTTTTCACCTTCGTTTGTCGGAAATCCGGTGGCGAGTGGACCGCCAATCAGTACTCAGGCGACCTTGAAGGTTCCGCCGCTTCAACCTATGATCTCCAGAGGAAGCTCGTTGCGTCTGCTCTCTCTGTCGATTCCTCCGGTGGCGTTCAGTCCTCATTCTCTTACGTTTCTCCCAGCTCCGCCGTTTTTCAGGTATTCTTTGTTTTCTCTGCTGGATATTCGCTGAAATAGGCGAAAACTTGTCGAGATTATCGATACATGTTCTGTTTTACCCGTTTGTCTAGTGGATTCTTCGAATGTATTTGATTTTATTGCTTGATTGTTCTCGATCTCACGCACTTACTCTTTAATGTTTGATTTTGTTAATCTCAGTATTTAACTGATTGTGTTTTTTTTCCGTCGATTTGCAATGACGGGATTATCCTTACCTAGTTTTTTCCTTTTTGATGTGCGAGTGTTACTTTAAGTTCGATCTGTAGGGTAATGTTGTTCATTTGCGAATATGGATTTTGATTATATAATCCACTAATATGAATTTGTTCAACCAGCAGACCTCCGAATTCTTTCTCAATATATGAACACATTTTGCATTTTGAATCATTTCATTGCTGGCAATCGTATTTCTAGTATGTTCATTGCTGAGTTTCTTGATTGGTTACAAGTTATCTGCATTCACCCTAACCTTTACATTCAATTTTAACTTCTTTGAATAAGAAAATCTGATATTGTGTGATTCCTTGTTGGGAAGCTTTCTTGCAAAGTATTTAGAAAAGCTTGGTTTAAGTGACGGGTCCTTTGAATGAACTCTATTTATGATATCTCCTGAATTATCTGACTGCATTCCTCCCTGTTATTGCCTACCATGTACGCCTACCCTAAACCTTAATTTTTTCAGGTGATCATTGGTGGTGCTAGTGGCGGTGGTATCATTAGTGGTGGAGCAGCGGCAGCCGCCCCTGCTGGAGGAGCTGCACCAGCTGCAGAAGCCCCAGCTCCAGCGAAGGAGGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCTTTTCACTTTTTGATTAA ATGGGAGTTTTCACCTTCGTTTGTCGGAAATCCGGTGGCGAGTGGACCGCCAATCAGTACTCAGGCGACCTTGAAGGTTCCGCCGCTTCAACCTATGATCTCCAGAGGAAGCTCGTTGCGTCTGCTCTCTCTGTCGATTCCTCCGGTGGCGTTCAGTCCTCATTCTCTTACGTTTCTCCCAGCTCCGCCGTTTTTCAGGTGATCATTGGTGGTGCTAGTGGCGGTGGTATCATTAGTGGTGGAGCAGCGGCAGCCGCCCCTGCTGGAGGAGCTGCACCAGCTGCAGAAGCCCCAGCTCCAGCGAAGGAGGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCTTTTCACTTTTTGATTAA ATGGGAGTTTTCACCTTCGTTTGTCGGAAATCCGGTGGCGAGTGGACCGCCAATCAGTACTCAGGCGACCTTGAAGGTTCCGCCGCTTCAACCTATGATCTCCAGAGGAAGCTCGTTGCGTCTGCTCTCTCTGTCGATTCCTCCGGTGGCGTTCAGTCCTCATTCTCTTACGTTTCTCCCAGCTCCGCCGTTTTTCAGGTGATCATTGGTGGTGCTAGTGGCGGTGGTATCATTAGTGGTGGAGCAGCGGCAGCCGCCCCTGCTGGAGGAGCTGCACCAGCTGCAGAAGCCCCAGCTCCAGCGAAGGAGGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCTTTTCACTTTTTGATTAA MGVFTFVCRKSGGEWTANQYSGDLEGSAASTYDLQRKLVASALSVDSSGGVQSSFSYVSPSSAVFQVIIGGASGGGIISGGAAAAAPAGGAAPAAEAPAPAKEEVKEESDDDDLGFSLFD Homology
BLAST of Csor.00g272940 vs. ExPASy Swiss-Prot
Match: P56724 (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701400 PE=3 SV=3) HSP 1 Score: 135.6 bits (340), Expect = 3.8e-31 Identity = 81/120 (67.50%), Postives = 91/120 (75.83%), Query Frame = 0
BLAST of Csor.00g272940 vs. ExPASy Swiss-Prot
Match: Q9LVC9 (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 2.4e-30 Identity = 74/119 (62.18%), Postives = 87/119 (73.11%), Query Frame = 0
BLAST of Csor.00g272940 vs. ExPASy Swiss-Prot
Match: O24413 (60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3) HSP 1 Score: 129.4 bits (324), Expect = 2.7e-29 Identity = 75/121 (61.98%), Postives = 93/121 (76.86%), Query Frame = 0
BLAST of Csor.00g272940 vs. ExPASy Swiss-Prot
Match: Q9SVZ6 (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 2.3e-28 Identity = 76/121 (62.81%), Postives = 92/121 (76.03%), Query Frame = 0
BLAST of Csor.00g272940 vs. NCBI nr
Match: XP_023537756.1 (60S acidic ribosomal protein P3 [Cucurbita pepo subsp. pepo] >KAG6586095.1 60S acidic ribosomal protein P3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020919.1 60S acidic ribosomal protein P3 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 213 bits (542), Expect = 4.06e-69 Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0
BLAST of Csor.00g272940 vs. NCBI nr
Match: XP_022937950.1 (60S acidic ribosomal protein P3 [Cucurbita moschata]) HSP 1 Score: 209 bits (533), Expect = 9.56e-68 Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0
BLAST of Csor.00g272940 vs. NCBI nr
Match: XP_022969611.1 (60S acidic ribosomal protein P3-like [Cucurbita maxima]) HSP 1 Score: 204 bits (520), Expect = 9.18e-66 Identity = 117/120 (97.50%), Postives = 117/120 (97.50%), Query Frame = 0
BLAST of Csor.00g272940 vs. NCBI nr
Match: XP_004148320.1 (60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypothetical protein Csa_021210 [Cucumis sativus]) HSP 1 Score: 179 bits (453), Expect = 1.55e-55 Identity = 102/121 (84.30%), Postives = 110/121 (90.91%), Query Frame = 0
BLAST of Csor.00g272940 vs. NCBI nr
Match: XP_022929782.1 (60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S acidic ribosomal protein P3-2-like [Cucurbita maxima] >XP_023521367.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >XP_023545674.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >KAG6598882.1 60S acidic ribosomal protein P3-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029833.1 60S acidic ribosomal protein P3-2 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 178 bits (451), Expect = 3.13e-55 Identity = 102/121 (84.30%), Postives = 108/121 (89.26%), Query Frame = 0
BLAST of Csor.00g272940 vs. ExPASy TrEMBL
Match: A0A6J1FI91 (60S acidic ribosomal protein P3 OS=Cucurbita moschata OX=3662 GN=LOC111444187 PE=4 SV=1) HSP 1 Score: 209 bits (533), Expect = 4.63e-68 Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0
BLAST of Csor.00g272940 vs. ExPASy TrEMBL
Match: A0A6J1HYA3 (60S acidic ribosomal protein P3-like OS=Cucurbita maxima OX=3661 GN=LOC111468587 PE=4 SV=1) HSP 1 Score: 204 bits (520), Expect = 4.45e-66 Identity = 117/120 (97.50%), Postives = 117/120 (97.50%), Query Frame = 0
BLAST of Csor.00g272940 vs. ExPASy TrEMBL
Match: A0A0A0LJB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1) HSP 1 Score: 179 bits (453), Expect = 7.50e-56 Identity = 102/121 (84.30%), Postives = 110/121 (90.91%), Query Frame = 0
BLAST of Csor.00g272940 vs. ExPASy TrEMBL
Match: A0A6J1KB28 (60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC111492258 PE=4 SV=1) HSP 1 Score: 178 bits (451), Expect = 1.51e-55 Identity = 102/121 (84.30%), Postives = 108/121 (89.26%), Query Frame = 0
BLAST of Csor.00g272940 vs. ExPASy TrEMBL
Match: A0A6J1ENN1 (60S acidic ribosomal protein P3-2-like OS=Cucurbita moschata OX=3662 GN=LOC111436268 PE=4 SV=1) HSP 1 Score: 178 bits (451), Expect = 1.51e-55 Identity = 102/121 (84.30%), Postives = 108/121 (89.26%), Query Frame = 0
BLAST of Csor.00g272940 vs. TAIR 10
Match: AT5G57290.1 (60S acidic ribosomal protein family ) HSP 1 Score: 132.9 bits (333), Expect = 1.7e-31 Identity = 74/119 (62.18%), Postives = 87/119 (73.11%), Query Frame = 0
BLAST of Csor.00g272940 vs. TAIR 10
Match: AT5G57290.3 (60S acidic ribosomal protein family ) HSP 1 Score: 129.0 bits (323), Expect = 2.5e-30 Identity = 74/119 (62.18%), Postives = 87/119 (73.11%), Query Frame = 0
BLAST of Csor.00g272940 vs. TAIR 10
Match: AT4G25890.1 (60S acidic ribosomal protein family ) HSP 1 Score: 126.3 bits (316), Expect = 1.6e-29 Identity = 76/121 (62.81%), Postives = 92/121 (76.03%), Query Frame = 0
BLAST of Csor.00g272940 vs. TAIR 10
Match: AT5G57290.2 (60S acidic ribosomal protein family ) HSP 1 Score: 118.2 bits (295), Expect = 4.4e-27 Identity = 60/81 (74.07%), Postives = 68/81 (83.95%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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