Csor.00g272280 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g272280
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages;
LocationCsor_Chr12: 13637891 .. 13638728 (+)
RNA-Seq ExpressionCsor.00g272280
SyntenyCsor.00g272280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCTTTGGATGGTTCGTTAAAAACAGGTAATTTCAATAGTTGGTAAAGATAGAGAGTAAATAATGAGTTCTTGAACAATATTAAATGAACCCAGCTTTATTTTATATTGACATTGATAATAATAAGCCTTATTTATTTATTTATTTATATTGACCAATTACTACTGTAGTATTGTAGATATAGCATGTGTGTAATAAATTTATGATGGATATGAATGATATCAGTTCCCTTTCATTTGATGAACATTGTAGATATAGCTCATGGTTATTGCGAGAAAGAATGAAGGATTAGTCATTTGATGAACATTACAAGATACTTTGACTCATTTCTATTGTTTTTGTAACTTATTTTGACTAGCAATTTGACAAAACACAACTTCATCAGGTTTTCTGTGCAGGAATATAGTTAGCTTTCCGCATGAAGACCATTCGAGGAATGTCATATTCTATGACATTCCTGAAACAGTTCCTGTGCAGACTTATTTGCATCTTCTCCCTGGTAGGTCTCCATCTACTAGCATTGCATTGCAGCTTCTCCCTGTATGAATCCTTAACTTTTAATGTTTTCATCTACTAGCATTGATTACTTGGCTTCTAGACCGGGAAAACTTCCTAGGAAAAACTACTTACCTGGCTACCGAGAAAACTTCCTAGGAAAACTTACCTAGCTCTTGCTCTAGACGGGGAAAACTTCCTAGGAAAACTTTACCTAGAGCTCTTGCTCTAGAGGGGGAAAAGTTCCTAGGAAAACTTACCTTGCTAGAGATGGGGAGAAGAGTTCCTAGGAAAACTTACCTTGCTCTAGACGGTAAAAACTTCCTAGGAAAACTTTAA

mRNA sequence

ATGGAGGCTTTGGATGGTTCGTTAAAAACAGGTTTTCTGTGCAGGAATATAGTTAGCTTTCCGCATGAAGACCATTCGAGGAATGTCATATTCTATGACATTCCTGAAACAGTTCCTGTGCAGACTTATTTGCATCTTCTCCCTGGTAGGTCTCCATCTACTAGCATTGCATTGCAGCTTCTCCCTGAAAACTTACCTAGCTCTTGCTCTAGACGGGGAAAACTTCCTAGGAAAACTTTACCTAGAGCTCTTGCTCTAGAGGGGGAAAAGTTCCTAGGAAAACTTACCTTGCTAGAGATGGGGAGAAGAGTTCCTAGGAAAACTTACCTTGCTCTAGACGGTAAAAACTTCCTAGGAAAACTTTAA

Coding sequence (CDS)

ATGGAGGCTTTGGATGGTTCGTTAAAAACAGGTTTTCTGTGCAGGAATATAGTTAGCTTTCCGCATGAAGACCATTCGAGGAATGTCATATTCTATGACATTCCTGAAACAGTTCCTGTGCAGACTTATTTGCATCTTCTCCCTGGTAGGTCTCCATCTACTAGCATTGCATTGCAGCTTCTCCCTGAAAACTTACCTAGCTCTTGCTCTAGACGGGGAAAACTTCCTAGGAAAACTTTACCTAGAGCTCTTGCTCTAGAGGGGGAAAAGTTCCTAGGAAAACTTACCTTGCTAGAGATGGGGAGAAGAGTTCCTAGGAAAACTTACCTTGCTCTAGACGGTAAAAACTTCCTAGGAAAACTTTAA

Protein sequence

MEALDGSLKTGFLCRNIVSFPHEDHSRNVIFYDIPETVPVQTYLHLLPGRSPSTSIALQLLPENLPSSCSRRGKLPRKTLPRALALEGEKFLGKLTLLEMGRRVPRKTYLALDGKNFLGKL
Homology
[Close]
BLAST of Csor.00g272280 vs. ExPASy Swiss-Prot
Match: Q9FIN7 (MAG2-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=MIP2 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 5.2e-04
Identity = 19/26 (73.08%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 34  IPETVPVQTYLHLLPGRSPSTSIALQ 60
           IPETVPV+TY HLLPG+SP TS+A++
Sbjct: 615 IPETVPVETYAHLLPGKSPPTSMAVR 640

[Close]
BLAST of Csor.00g272280 vs. NCBI nr
Match: KAG6586161.1 (hypothetical protein SDJN03_18894, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244 bits (623), Expect = 1.93e-81
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MEALDGSLKTGFLCRNIVSFPHEDHSRNVIFYDIPETVPVQTYLHLLPGRSPSTSIALQL 60
           MEALDGSLKTGFLCRNIVSFPHEDHSRNVIFYDIPETVPVQTYLHLLPGRSPSTSIALQL
Sbjct: 1   MEALDGSLKTGFLCRNIVSFPHEDHSRNVIFYDIPETVPVQTYLHLLPGRSPSTSIALQL 60

Query: 61  LPENLPSSCSRRGKLPRKTLPRALALEGEKFLGKLTLLEMGRRVPRKTYLALDGKNFLGK 120
           LPENLPSSCSRRGKLPRKTLPRALALEGEKFLGKLTLLEMGRRVPRKTYLALDGKNFLGK
Sbjct: 61  LPENLPSSCSRRGKLPRKTLPRALALEGEKFLGKLTLLEMGRRVPRKTYLALDGKNFLGK 120

[Close]
BLAST of Csor.00g272280 vs. TAIR 10
Match: AT5G24350.1 (CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 3.7e-05
Identity = 19/26 (73.08%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 34  IPETVPVQTYLHLLPGRSPSTSIALQ 60
           IPETVPV+TY HLLPG+SP TS+A++
Sbjct: 615 IPETVPVETYAHLLPGKSPPTSMAVR 640

[Close]
BLAST of Csor.00g272280 vs. TAIR 10
Match: AT5G24350.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244). )

HSP 1 Score: 45.4 bits (106), Expect = 3.7e-05
Identity = 19/26 (73.08%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 34  IPETVPVQTYLHLLPGRSPSTSIALQ 60
           IPETVPV+TY HLLPG+SP TS+A++
Sbjct: 635 IPETVPVETYAHLLPGKSPPTSMAVR 660

The following BLAST results are available for this feature:
BLAST of Csor.00g272280 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FIN75.2e-0473.08MAG2-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=MIP2 PE=1 SV=1[more]
BLAST of Csor.00g272280 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6586161.11.93e-81100.00hypothetical protein SDJN03_18894, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g272280 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g272280 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G24350.13.7e-0573.08CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244); Has 18... [more]
AT5G24350.23.7e-0573.08FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g272280.m01Csor.00g272280.m01mRNA