Csor.00g272280 (gene) Silver-seed gourd (wild; sororia) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGGCTTTGGATGGTTCGTTAAAAACAGGTAATTTCAATAGTTGGTAAAGATAGAGAGTAAATAATGAGTTCTTGAACAATATTAAATGAACCCAGCTTTATTTTATATTGACATTGATAATAATAAGCCTTATTTATTTATTTATTTATATTGACCAATTACTACTGTAGTATTGTAGATATAGCATGTGTGTAATAAATTTATGATGGATATGAATGATATCAGTTCCCTTTCATTTGATGAACATTGTAGATATAGCTCATGGTTATTGCGAGAAAGAATGAAGGATTAGTCATTTGATGAACATTACAAGATACTTTGACTCATTTCTATTGTTTTTGTAACTTATTTTGACTAGCAATTTGACAAAACACAACTTCATCAGGTTTTCTGTGCAGGAATATAGTTAGCTTTCCGCATGAAGACCATTCGAGGAATGTCATATTCTATGACATTCCTGAAACAGTTCCTGTGCAGACTTATTTGCATCTTCTCCCTGGTAGGTCTCCATCTACTAGCATTGCATTGCAGCTTCTCCCTGTATGAATCCTTAACTTTTAATGTTTTCATCTACTAGCATTGATTACTTGGCTTCTAGACCGGGAAAACTTCCTAGGAAAAACTACTTACCTGGCTACCGAGAAAACTTCCTAGGAAAACTTACCTAGCTCTTGCTCTAGACGGGGAAAACTTCCTAGGAAAACTTTACCTAGAGCTCTTGCTCTAGAGGGGGAAAAGTTCCTAGGAAAACTTACCTTGCTAGAGATGGGGAGAAGAGTTCCTAGGAAAACTTACCTTGCTCTAGACGGTAAAAACTTCCTAGGAAAACTTTAA ATGGAGGCTTTGGATGGTTCGTTAAAAACAGGTTTTCTGTGCAGGAATATAGTTAGCTTTCCGCATGAAGACCATTCGAGGAATGTCATATTCTATGACATTCCTGAAACAGTTCCTGTGCAGACTTATTTGCATCTTCTCCCTGGTAGGTCTCCATCTACTAGCATTGCATTGCAGCTTCTCCCTGAAAACTTACCTAGCTCTTGCTCTAGACGGGGAAAACTTCCTAGGAAAACTTTACCTAGAGCTCTTGCTCTAGAGGGGGAAAAGTTCCTAGGAAAACTTACCTTGCTAGAGATGGGGAGAAGAGTTCCTAGGAAAACTTACCTTGCTCTAGACGGTAAAAACTTCCTAGGAAAACTTTAA ATGGAGGCTTTGGATGGTTCGTTAAAAACAGGTTTTCTGTGCAGGAATATAGTTAGCTTTCCGCATGAAGACCATTCGAGGAATGTCATATTCTATGACATTCCTGAAACAGTTCCTGTGCAGACTTATTTGCATCTTCTCCCTGGTAGGTCTCCATCTACTAGCATTGCATTGCAGCTTCTCCCTGAAAACTTACCTAGCTCTTGCTCTAGACGGGGAAAACTTCCTAGGAAAACTTTACCTAGAGCTCTTGCTCTAGAGGGGGAAAAGTTCCTAGGAAAACTTACCTTGCTAGAGATGGGGAGAAGAGTTCCTAGGAAAACTTACCTTGCTCTAGACGGTAAAAACTTCCTAGGAAAACTTTAA MEALDGSLKTGFLCRNIVSFPHEDHSRNVIFYDIPETVPVQTYLHLLPGRSPSTSIALQLLPENLPSSCSRRGKLPRKTLPRALALEGEKFLGKLTLLEMGRRVPRKTYLALDGKNFLGKL Homology
BLAST of Csor.00g272280 vs. ExPASy Swiss-Prot
Match: Q9FIN7 (MAG2-interacting protein 2 OS=Arabidopsis thaliana OX=3702 GN=MIP2 PE=1 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 5.2e-04 Identity = 19/26 (73.08%), Postives = 24/26 (92.31%), Query Frame = 0
BLAST of Csor.00g272280 vs. NCBI nr
Match: KAG6586161.1 (hypothetical protein SDJN03_18894, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 244 bits (623), Expect = 1.93e-81 Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0
BLAST of Csor.00g272280 vs. TAIR 10
Match: AT5G24350.1 (CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 45.4 bits (106), Expect = 3.7e-05 Identity = 19/26 (73.08%), Postives = 24/26 (92.31%), Query Frame = 0
BLAST of Csor.00g272280 vs. TAIR 10
Match: AT5G24350.2 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Secretory pathway Sec39 (InterPro:IPR013244). ) HSP 1 Score: 45.4 bits (106), Expect = 3.7e-05 Identity = 19/26 (73.08%), Postives = 24/26 (92.31%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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