Csor.00g259530 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g259530
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionISWI chromatin-remodeling complex ATPase CHR11
LocationCsor_Chr17: 1675274 .. 1677372 (+)
RNA-Seq ExpressionCsor.00g259530
SyntenyCsor.00g259530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintronterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCAATGGTTCGAGATCGTCGGAGGAAGAGGAACCAACAAGCGAGCAGATCAATGAGGAGCTCGAAGCGATCGCTCGTTCGGCAGGCTCCGATGAGGATGAATCCGCCGACGATTCAGGTAACGATACATTACCTGTCGAAAATGGCTACGAAGAGGTAAATTTTGAATTGATTTCCGCAACATACGGTATTTATTTGTGTTAATTTAGTCGGATCTCGGATTTGATTTTTAAATTTCCTGTTACGAAGGTTAGATGGACTATGGTGGCATTGTTGAACACAAATCGTATCATTTTTCTTAGAACAGCGTCGTGATCGTGTTTCATGCTTCTTTAGATTTCTTGTCACTTCTAATATGCTTTTGCCCTGTTTGATTCTCCATTTGGGCAAAGTGCCATTAGAGTCCTCCTTTATTTCACTCTTGTGCCAACGATCTCCAAAAGGTTTTGTTCTCGTAAATAGGACATCATGCTTGTTGTCCACTTGTTGTAATTGTTGAGTTTCTTTATTCCTTAAATAATTTGGAAATTGTGTTGGTTATACTTCAGTAATAACAAAAGAAACTCACTTGCAGAGTCACGGACATAATACTTGCAGAGTCACGGACTACTCACGACACAAAAGAAACTCACTCACTAATAATATCAGAAAATCCAAAACATGAAGTGTAGTAGCAGAGTGTCTTGTAATCTCTTCTCAATTAGTGTTAATAAAGAGTGCGAGTGATTCCTTCAAACAGTTTCAACAATCTGCTATTAGAGCCAGGTTAGTGTTGGTTGTTTGATCTCTTTGAATTTTTAGTATGCTATGTGGTTGGTTGCAGCTCTGTCTAATCTTACACATCATAACGATTTATTGAGATTATTAGTGAGTCAGTTTCTTTTGTGTCATGAGTAGTTCGTGATTTTACATGTTTTATGTCGAAAGAACTTGTTTGGTATTACAAGGTATAATCAACACTATGAGTGATTTCCAAATCGTTTGAGGCTCTGTCTAGTCTTACACATCATAACGATTTCTTAAGATTATTAGTGAGTCAGTTTCTTTTGTGTCGTGAGTAGTCCGTGACTCTGCATATTTTGTGTCGAAAGAATTTGTTTGGTATTACTGAGGTATAATCAACACTATGGGTGATTTTCAAATCGTTGGAGGAATCAAGAAACTCAACAACAACATGTACTTCACACAACTCTTCGTGGGAAACACATCAATGATTGTTTTGTTGAAACGTTTTTAGAACGTGTCTGCTAGGGAGAGGTTTTCACACCCTTATAAAGAATATTTCGTTCTCCTCCGTACCGACGTGAGATCTCACAATCCACCCTTTTAGGACCCATCGTCCTCATTGGCACTCGTTCCCCTACAATCGATATGGGATCTCATACAAACTTTGTTCTTTGGGCACGATCACATTTCCCTCTTTTCGTACATAAGCACATTTTTCATTTTTAGTTTTAAGTATGAATTGTTTGGAAATGAATGAACACTTGTTATTAGTACTTAGGTTGTCCAAGTCAACCAATAGGTGAGATTCAAAATCTAGATTCGACAAAACCGGATGACCTTGACATTTCCCTGCATCCCGTGCAACATGATCTTCGCTTTTTAGAGTGAAGACTATTCCACACATTAACACAATTTTTCCCAACATATTTTGTCGGGCTCACATGCATTCTAAGAAGATTTGCAAGAGATTACCCAACATAGAATTATATTATGGAAAGCACCCTAATCATAAAATTCTTATGATTGAGCCACTCAAAAGGAAGGTACACTTTGTTGGTATAGGTATCGACTTTCAATTCCTTTTAAACTTTTCTTAGCCATCATAACCTTTAGATCTTTCTCATTCGAATGTAGTTTCGATTTATTCATATACCTCTTCTTTATTCAGGTGTTATAATTTCACGATAAATATGCAATTATATTTATTTCCGGTTGATATTTAAGATCTCTTACAAGTTTCCTATGGTTACTATTTCTTTAAGACAGCTGATACATTAGTCAGTGTGCTAATAAATGGTGCTTTTCCATTAGGGGCTTGGCAAGACATTACTAACCATCTCCTTGTTGGGCTAGCCGCTACAGGGGCCTAA

mRNA sequence

ATGTCCAATGGTTCGAGATCGTCGGAGGAAGAGGAACCAACAAGCGAGCAGATCAATGAGGAGCTCGAAGCGATCGCTCGTTCGGCAGGCTCCGATGAGGATGAATCCGCCGACGATTCAGGTAACGATACATTACCTGTCGAAAATGGCTACGAAGAGGTAAATTTTGAATTGATTTCCGCAACATACGCTGATACATTAGTCAGTGTGCTAATAAATGGTGCTTTTCCATTAGGGGCTTGGCAAGACATTACTAACCATCTCCTTGTTGGGCTAGCCGCTACAGGGGCCTAA

Coding sequence (CDS)

ATGTCCAATGGTTCGAGATCGTCGGAGGAAGAGGAACCAACAAGCGAGCAGATCAATGAGGAGCTCGAAGCGATCGCTCGTTCGGCAGGCTCCGATGAGGATGAATCCGCCGACGATTCAGGTAACGATACATTACCTGTCGAAAATGGCTACGAAGAGGTAAATTTTGAATTGATTTCCGCAACATACGCTGATACATTAGTCAGTGTGCTAATAAATGGTGCTTTTCCATTAGGGGCTTGGCAAGACATTACTAACCATCTCCTTGTTGGGCTAGCCGCTACAGGGGCCTAA

Protein sequence

MSNGSRSSEEEEPTSEQINEELEAIARSAGSDEDESADDSGNDTLPVENGYEEVNFELISATYADTLVSVLINGAFPLGAWQDITNHLLVGLAATGA
Homology
[Close]
BLAST of Csor.00g259530 vs. NCBI nr
Match: KAG6575051.1 (hypothetical protein SDJN03_25690, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 184 bits (468), Expect = 1.46e-58
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MSNGSRSSEEEEPTSEQINEELEAIARSAGSDEDESADDSGNDTLPVENGYEEVNFELIS 60
          MSNGSRSSEEEEPTSEQINEELEAIARSAGSDEDESADDSGNDTLPVENGYEEVNFELIS
Sbjct: 1  MSNGSRSSEEEEPTSEQINEELEAIARSAGSDEDESADDSGNDTLPVENGYEEVNFELIS 60

Query: 61 ATYADTLVSVLINGAFPLGAWQDITNHLLVGLAATGA 97
          ATYADTLVSVLINGAFPLGAWQDITNHLLVGLAATGA
Sbjct: 61 ATYADTLVSVLINGAFPLGAWQDITNHLLVGLAATGA 97

[Close]
BLAST of Csor.00g259530 vs. NCBI nr
Match: XP_038874770.1 (ISWI chromatin-remodeling complex ATPase CHR11 isoform X2 [Benincasa hispida])

HSP 1 Score: 75.1 bits (183), Expect = 3.25e-13
Identity = 45/58 (77.59%), Postives = 48/58 (82.76%), Query Frame = 0 

Query: 1  MSNGSRSSEEEEPTSEQINEE-----LEAIARSAGSDEDESADDSGNDTLPVENGYEE 53
          MSNGS SSEEEE T+EQINEE     LEA+ARSAGSDEDE+ADDS NDT PVENG EE
Sbjct: 15 MSNGSSSSEEEEQTNEQINEEEDEEELEAVARSAGSDEDEAADDSDNDTSPVENGDEE 72

[Close]
BLAST of Csor.00g259530 vs. NCBI nr
Match: XP_038874769.1 (ISWI chromatin-remodeling complex ATPase CHR11 isoform X1 [Benincasa hispida])

HSP 1 Score: 75.1 bits (183), Expect = 3.25e-13
Identity = 45/58 (77.59%), Postives = 48/58 (82.76%), Query Frame = 0 

Query: 1  MSNGSRSSEEEEPTSEQINEE-----LEAIARSAGSDEDESADDSGNDTLPVENGYEE 53
          MSNGS SSEEEE T+EQINEE     LEA+ARSAGSDEDE+ADDS NDT PVENG EE
Sbjct: 15 MSNGSSSSEEEEQTNEQINEEEDEEELEAVARSAGSDEDEAADDSDNDTSPVENGDEE 72

[Close]
BLAST of Csor.00g259530 vs. NCBI nr
Match: XP_023522605.1 (ISWI chromatin-remodeling complex ATPase CHR11-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.0 bits (175), Expect = 2.98e-12
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0 

Query: 1  MSNGSRSSEEEEPTSEQINEE-----LEAIARSAGSDEDESADDSGNDTLPVENGYEE 53
          MSNGS SSEEEE T+EQINEE     LEA+ARSAGSDEDE+A+DS ND  PVENG EE
Sbjct: 15 MSNGSSSSEEEEQTNEQINEEEDEEELEAVARSAGSDEDEAAEDSDNDASPVENGEEE 72

[Close]
BLAST of Csor.00g259530 vs. NCBI nr
Match: XP_022999874.1 (ISWI chromatin-remodeling complex ATPase CHR11 [Cucurbita maxima])

HSP 1 Score: 72.0 bits (175), Expect = 3.93e-12
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0 

Query: 1  MSNGSRSSEEEEPTSEQINEE-----LEAIARSAGSDEDESADDSGNDTLPVENGYEE 53
          MSNGS SSEEEE T+EQINEE     LEA+ARSAGSDEDE+A+DS ND  PVENG EE
Sbjct: 15 MSNGSSSSEEEEQTNEQINEEEDEEELEAVARSAGSDEDEAAEDSDNDASPVENGEEE 72

[Close]
BLAST of Csor.00g259530 vs. ExPASy TrEMBL
Match: A0A6J1KIC1 (ISWI chromatin-remodeling complex ATPase CHR11 OS=Cucurbita maxima OX=3661 GN=LOC111494217 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.90e-12
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0 

Query: 1  MSNGSRSSEEEEPTSEQINEE-----LEAIARSAGSDEDESADDSGNDTLPVENGYEE 53
          MSNGS SSEEEE T+EQINEE     LEA+ARSAGSDEDE+A+DS ND  PVENG EE
Sbjct: 15 MSNGSSSSEEEEQTNEQINEEEDEEELEAVARSAGSDEDEAAEDSDNDASPVENGEEE 72

[Close]
BLAST of Csor.00g259530 vs. ExPASy TrEMBL
Match: A0A6J1EQ14 (ISWI chromatin-remodeling complex ATPase CHR11 OS=Cucurbita moschata OX=3662 GN=LOC111436797 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.90e-12
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0 

Query: 1  MSNGSRSSEEEEPTSEQINEE-----LEAIARSAGSDEDESADDSGNDTLPVENGYEE 53
          MSNGS SSEEEE T+EQINEE     LEA+ARSAGSDEDE+A+DS ND  PVENG EE
Sbjct: 15 MSNGSSSSEEEEQTNEQINEEEDEEELEAVARSAGSDEDEAAEDSDNDASPVENGEEE 72

[Close]
BLAST of Csor.00g259530 vs. ExPASy TrEMBL
Match: A0A1S3C7Y4 (ISWI chromatin-remodeling complex ATPase CHR11 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103497876 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.60e-12
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0 

Query: 1  MSNGSRSSEEEEPTSEQINEE-----LEAIARSAGSDEDESADDSGNDTLPVENGYEE 53
          MSNGS SSEEEE T++QINEE     LEA+ARSAGSDEDE+ADDS ND  PVENG EE
Sbjct: 15 MSNGSSSSEEEEQTNDQINEEEDEEELEAVARSAGSDEDEAADDSDNDGSPVENGEEE 72

[Close]
BLAST of Csor.00g259530 vs. ExPASy TrEMBL
Match: A0A1S3C823 (ISWI chromatin-remodeling complex ATPase CHR11 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497876 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.60e-12
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0 

Query: 1  MSNGSRSSEEEEPTSEQINEE-----LEAIARSAGSDEDESADDSGNDTLPVENGYEE 53
          MSNGS SSEEEE T++QINEE     LEA+ARSAGSDEDE+ADDS ND  PVENG EE
Sbjct: 15 MSNGSSSSEEEEQTNDQINEEEDEEELEAVARSAGSDEDEAADDSDNDGSPVENGEEE 72

[Close]
BLAST of Csor.00g259530 vs. ExPASy TrEMBL
Match: A0A5A7SRC8 (ISWI chromatin-remodeling complex ATPase CHR11 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001320 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.60e-12
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0 

Query: 1  MSNGSRSSEEEEPTSEQINEE-----LEAIARSAGSDEDESADDSGNDTLPVENGYEE 53
          MSNGS SSEEEE T++QINEE     LEA+ARSAGSDEDE+ADDS ND  PVENG EE
Sbjct: 15 MSNGSSSSEEEEQTNDQINEEEDEEELEAVARSAGSDEDEAADDSDNDGSPVENGEEE 72

The following BLAST results are available for this feature:
BLAST of Csor.00g259530 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g259530 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6575051.11.46e-58100.00hypothetical protein SDJN03_25690, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038874770.13.25e-1377.59ISWI chromatin-remodeling complex ATPase CHR11 isoform X2 [Benincasa hispida][more]
XP_038874769.13.25e-1377.59ISWI chromatin-remodeling complex ATPase CHR11 isoform X1 [Benincasa hispida][more]
XP_023522605.12.98e-1274.14ISWI chromatin-remodeling complex ATPase CHR11-like, partial [Cucurbita pepo sub... [more]
XP_022999874.13.93e-1274.14ISWI chromatin-remodeling complex ATPase CHR11 [Cucurbita maxima][more]
BLAST of Csor.00g259530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KIC11.90e-1274.14ISWI chromatin-remodeling complex ATPase CHR11 OS=Cucurbita maxima OX=3661 GN=LO... [more]
A0A6J1EQ141.90e-1274.14ISWI chromatin-remodeling complex ATPase CHR11 OS=Cucurbita moschata OX=3662 GN=... [more]
A0A1S3C7Y42.60e-1274.14ISWI chromatin-remodeling complex ATPase CHR11 isoform X2 OS=Cucumis melo OX=365... [more]
A0A1S3C8232.60e-1274.14ISWI chromatin-remodeling complex ATPase CHR11 isoform X1 OS=Cucumis melo OX=365... [more]
A0A5A7SRC82.60e-1274.14ISWI chromatin-remodeling complex ATPase CHR11 isoform X1 OS=Cucumis melo var. m... [more]
BLAST of Csor.00g259530 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g259530.m01Csor.00g259530.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016584 nucleosome positioning
cellular_component GO:0005634 nucleus
molecular_function GO:0005524 ATP binding
molecular_function GO:0008094 ATP-dependent activity, acting on DNA
molecular_function GO:0003677 DNA binding
molecular_function GO:0031491 nucleosome binding