Csor.00g259300 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g259300
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Cytochrome c oxidase assembly factor 4-like protein
Location	Csor_Chr17: 1544627 .. 1545219 (-)
RNA-Seq Expression	Csor.00g259300
Synteny	Csor.00g259300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAATCCGCCGATTTCGCCGGAGAATCAGACGCCTCTTCACGGGAGCGACGCCGACGCCGACGACGAGAACGTCAAGCAGCTCAATGAATGCTCCTCTTTCTACTTATCGTTACAGGTTCTTCGTGGCCATTGCGATCGTCATCTTCTTCTTTTTTACGTTCTGCTAAAACCCTAAGCCCTGAACTGCTAATTGATGTTTATTGTCTTGATCACCATAATTTTCAGGAATGTCTTATCAAAACTAACAGGAACTGGAAAGATTGCCAGGCTGGTACGCCGCCATCTCTCATTTCTTCTGGTTCTAAGTTCTAGGATTGTTTAGCTTCATCTCCGAATCGTATTGATTTTATTTTATTTTTTCGTTTGAAGTATTTATCCCTTAGATCGAACTGGAATTCATTGTAGCAATCGGCCAACATCTCGCCTGATTCTTACAAATTTGAAATTCCAATGTCTATTTTGAGTAATCCTTTAAATTTTTATCTAAAATGACTGTTCTAATGTATGATCTCACCACTGATTTGTCTGGCAGAGGTTCAAGCTTTGAAGGCTTGCAATGAGAGAAGGAAAACTGGCCATGGCAAGTGA

mRNA sequence

ATGGGGAATCCGCCGATTTCGCCGGAGAATCAGACGCCTCTTCACGGGAGCGACGCCGACGCCGACGACGAGAACGTCAAGCAGCTCAATGAATGCTCCTCTTTCTACTTATCGTTACAGGAATGTCTTATCAAAACTAACAGGAACTGGAAAGATTGCCAGGCTGAGGTTCAAGCTTTGAAGGCTTGCAATGAGAGAAGGAAAACTGGCCATGGCAAGTGA

Coding sequence (CDS)

ATGGGGAATCCGCCGATTTCGCCGGAGAATCAGACGCCTCTTCACGGGAGCGACGCCGACGCCGACGACGAGAACGTCAAGCAGCTCAATGAATGCTCCTCTTTCTACTTATCGTTACAGGAATGTCTTATCAAAACTAACAGGAACTGGAAAGATTGCCAGGCTGAGGTTCAAGCTTTGAAGGCTTGCAATGAGAGAAGGAAAACTGGCCATGGCAAGTGA

Protein sequence

MGNPPISPENQTPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQALKACNERRKTGHGK

Homology

[Close]

BLAST of Csor.00g259300 vs. NCBI nr
Match: KAG6575028.1 (hypothetical protein SDJN03_25667, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 154 bits (389), Expect = 2.97e-47
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MGNPPISPENQTPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60
          MGNPPISPENQTPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL
Sbjct: 1  MGNPPISPENQTPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60

Query: 61 KACNERRKTGHGK 73
          KACNERRKTGHGK
Sbjct: 61 KACNERRKTGHGK 73

[Close]

BLAST of Csor.00g259300 vs. NCBI nr
Match: XP_022958916.1 (uncharacterized protein LOC111460064 [Cucurbita moschata] >XP_023006279.1 uncharacterized protein LOC111499062 [Cucurbita maxima] >XP_023548597.1 uncharacterized protein LOC111807214 [Cucurbita pepo subsp. pepo] >KAG7013604.1 hypothetical protein SDJN02_23771 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152 bits (383), Expect = 2.45e-46
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGNPPISPENQTPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60
          MGNPPISPENQ PLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL
Sbjct: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60

Query: 61 KACNERRKTGHGK 73
          KACNERRKTGHGK
Sbjct: 61 KACNERRKTGHGK 73

[Close]

BLAST of Csor.00g259300 vs. NCBI nr
Match: XP_004153368.1 (cytochrome c oxidase assembly factor 4 homolog, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 128 bits (322), Expect = 5.01e-37
Identity = 61/73 (83.56%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1  MGNPPISPENQTPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60
          MG PPISPENQ PLH SDAD +DENVKQLNECSSFYLSLQ+CLIKTNRNWK CQAEVQAL
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KACNERRKTGHGK 73
          K+C+ERRK+G  K
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of Csor.00g259300 vs. NCBI nr
Match: XP_008458528.1 (PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_008458529.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_008458530.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >XP_016902266.1 PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumis melo] >KAA0033444.1 cytochrome c oxidase assembly factor 4-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 127 bits (318), Expect = 2.04e-36
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1  MGNPPISPENQTPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60
          MG PPISPEN+ PLH SDAD +DENVKQLNECSSFYLSLQ+CLIKTNRNWK CQAEVQAL
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KACNERRKTGHGK 73
          K+C+ERRK+G  K
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of Csor.00g259300 vs. NCBI nr
Match: XP_038874602.1 (uncharacterized protein LOC120067191 [Benincasa hispida] >XP_038874603.1 uncharacterized protein LOC120067191 [Benincasa hispida])

HSP 1 Score: 124 bits (311), Expect = 2.39e-35
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1  MGNPPISPENQTPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60
          MG PP SPENQ PLH SDA+ DDENVKQLNECSSFYLSLQ+CLIKTNRNWK CQAEVQAL
Sbjct: 1  MGKPPNSPENQPPLHRSDAEDDDENVKQLNECSSFYLSLQDCLIKTNRNWKACQAEVQAL 60

Query: 61 KACNERRKTGHGK 73
          K+C+ERRK G  K
Sbjct: 61 KSCSERRKPGQRK 73

[Close]

BLAST of Csor.00g259300 vs. ExPASy TrEMBL
Match: A0A6J1L1R2 (uncharacterized protein LOC111499062 OS=Cucurbita maxima OX=3661 GN=LOC111499062 PE=4 SV=1)

HSP 1 Score: 152 bits (383), Expect = 1.19e-46
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGNPPISPENQTPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60
          MGNPPISPENQ PLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL
Sbjct: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60

Query: 61 KACNERRKTGHGK 73
          KACNERRKTGHGK
Sbjct: 61 KACNERRKTGHGK 73

[Close]

BLAST of Csor.00g259300 vs. ExPASy TrEMBL
Match: A0A6J1H3G8 (uncharacterized protein LOC111460064 OS=Cucurbita moschata OX=3662 GN=LOC111460064 PE=4 SV=1)

HSP 1 Score: 152 bits (383), Expect = 1.19e-46
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 0


Query: 1  MGNPPISPENQTPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60
          MGNPPISPENQ PLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL
Sbjct: 1  MGNPPISPENQPPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60

Query: 61 KACNERRKTGHGK 73
          KACNERRKTGHGK
Sbjct: 61 KACNERRKTGHGK 73

[Close]

BLAST of Csor.00g259300 vs. ExPASy TrEMBL
Match: A0A0A0KEH3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062310 PE=4 SV=1)

HSP 1 Score: 128 bits (322), Expect = 2.43e-37
Identity = 61/73 (83.56%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1  MGNPPISPENQTPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60
          MG PPISPENQ PLH SDAD +DENVKQLNECSSFYLSLQ+CLIKTNRNWK CQAEVQAL
Sbjct: 1  MGKPPISPENQPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KACNERRKTGHGK 73
          K+C+ERRK+G  K
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of Csor.00g259300 vs. ExPASy TrEMBL
Match: A0A1S3C8M5 (cytochrome c oxidase assembly factor 4 homolog, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103497907 PE=4 SV=1)

HSP 1 Score: 127 bits (318), Expect = 9.89e-37
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1  MGNPPISPENQTPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60
          MG PPISPEN+ PLH SDAD +DENVKQLNECSSFYLSLQ+CLIKTNRNWK CQAEVQAL
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KACNERRKTGHGK 73
          K+C+ERRK+G  K
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of Csor.00g259300 vs. ExPASy TrEMBL
Match: A0A5A7SQI1 (Cytochrome c oxidase assembly factor 4-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G001040 PE=4 SV=1)

HSP 1 Score: 127 bits (318), Expect = 9.89e-37
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1  MGNPPISPENQTPLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQAL 60
          MG PPISPEN+ PLH SDAD +DENVKQLNECSSFYLSLQ+CLIKTNRNWK CQAEVQAL
Sbjct: 1  MGKPPISPENRPPLHRSDADDEDENVKQLNECSSFYLSLQDCLIKTNRNWKSCQAEVQAL 60

Query: 61 KACNERRKTGHGK 73
          K+C+ERRK+G  K
Sbjct: 61 KSCSERRKSGQRK 73

[Close]

BLAST of Csor.00g259300 vs. TAIR 10
Match: AT5G18920.1 (Cox19-like CHCH family protein )

HSP 1 Score: 85.9 bits (211), Expect = 1.5e-17
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 13 PLHGSDADADDENVKQLNECSSFYLSLQECLIKTNRNWKDCQAEVQALKACNERR 68
          P H  DAD DDENVKQL ECSS YLSLQ+CL+ +NR+WK CQ  VQALK C+ERR
Sbjct: 20 PNHQMDADDDDENVKQLKECSSLYLSLQDCLVDSNRDWKSCQKHVQALKECHERR 74

The following BLAST results are available for this feature:

BLAST of Csor.00g259300 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g259300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6575028.1	2.97e-47	100.00	hypothetical protein SDJN03_25667, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022958916.1	2.45e-46	98.63	uncharacterized protein LOC111460064 [Cucurbita moschata] >XP_023006279.1 unchar...	[more]
XP_004153368.1	5.01e-37	83.56	cytochrome c oxidase assembly factor 4 homolog, mitochondrial isoform X2 [Cucumi...	[more]
XP_008458528.1	2.04e-36	82.19	PREDICTED: cytochrome c oxidase assembly factor 4 homolog, mitochondrial [Cucumi...	[more]
XP_038874602.1	2.39e-35	82.19	uncharacterized protein LOC120067191 [Benincasa hispida] >XP_038874603.1 unchara...	[more]

BLAST of Csor.00g259300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L1R2	1.19e-46	98.63	uncharacterized protein LOC111499062 OS=Cucurbita maxima OX=3661 GN=LOC111499062...	[more]
A0A6J1H3G8	1.19e-46	98.63	uncharacterized protein LOC111460064 OS=Cucurbita moschata OX=3662 GN=LOC1114600...	[more]
A0A0A0KEH3	2.43e-37	83.56	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G062310 PE=4 SV=1	[more]
A0A1S3C8M5	9.89e-37	82.19	cytochrome c oxidase assembly factor 4 homolog, mitochondrial OS=Cucumis melo OX...	[more]
A0A5A7SQI1	9.89e-37	82.19	Cytochrome c oxidase assembly factor 4-like protein OS=Cucumis melo var. makuwa ...	[more]

BLAST of Csor.00g259300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G18920.1	1.5e-17	70.91	Cox19-like CHCH family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR48236	COX19-LIKE CHCH FAMILY PROTEIN	coord: 4..70
IPR009069	Cysteine alpha-hairpin motif superfamily	SUPERFAMILY	47072	Cysteine alpha-hairpin motif	coord: 27..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g259300.m01	Csor.00g259300.m01	mRNA