Csor.00g246360 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g246360
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr14: 8458963 .. 8460400 (+)
RNA-Seq ExpressionCsor.00g246360
SyntenyCsor.00g246360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAGCCATTCATATGGGAAATCGGGCCCGTCCATTGATCGAGGTAGCCAAAGGCATCAACAAGTAGGTTCCGAACTCCTAGCATCGAGCTCAAGGATAGGCCGGCCCAAGGTAGGTTCTCTCGTGAATCCCATGCAGTCATTCATTAAGGTTGAGCATTAAGGTCCTATAGGCCTTAGGTTGTCAGAATAGAGTGAATATGAAGGAAAGAGAAGAAAGCCGATCTTGAATCGAACCTGCTCATAAGCTCTCTTTCAAAAGGCCCAGGAGAAGATGAATAAAGATCCAGATAGAATGTTTGTTTGGCTTTCTCAATTGCTTTCTCAGCCGTGCAGTACGTACTTCTACTTCTGTTTGGAGATTCCTTACTAGTGAGGACTTTGATTGACTAGAGTAGCCCTTATGTATCCGAAGGCGCTCTGATATGAACCAAGAGACATCATTCATACAATATACTTCAATGAAGATGTGAAGAAAATATTGTTGAAATTATCAAAAGATATTTCAATTCATGCCACATTGAAGAAGAATGAAGTTTCATGTGATAAATTGTGGGTTGATTACAATTTAGAGTTATTGTATTTCATTAATGTAGTTTAAGAGTTTTTATTTACTTTAGGTTACAATTACATAATGGCTAATTATGGCCATTAAGTATGAATGTTACAACTATTGGAATGTCTTTAATAGTTTCATTTTGAAGCTATATAAAGCCATGTATGTTGGATTTGTAAGAGACTTGGAAAATATATTAAAAGAAGCATTTGTGCTTTTCTTTAGCCAATGGCTAAGTTTCTTTGCAACTATATGTAGTTTAGGTTGCATGTAGAATCATTCAAGCTTGACATGATCAACCTTGCTTGTGGAGTGATTCGAATCTCAAACAAGTGTGTGAGATATTTGATCAACAAGAATCATTTAAGCTAGACATGATCGATCTTGCTTGTGGAGTGATTCGAATCTCAATCAAGTGTTCTTGTTTTGAGATATTCGATCAACAAGGTAATCCGAATCTTATTCCCCTTGTATTGATTCCTTATCTTATCACGCTCTTTTGTTTGTTTATGCGCTCGTGATTTGGCTTATAGTTAAGTGGATCCTACCCCGTTCAGTAGAATCCCAAGAAGAAAATGTCACCAAAGCGGGAGGCAGGAAAACATACCGACGCAGCGCAGTGCCTTTGATGAATGTAGACCGGAAAGGAATAGGACTTTCTAGTAGTTCCTTCTTCGAAAGTCTAAACTTTGTAGATGGCTTTAACGGTGAGAACCAGGAGGTGGGCTTGGTCTTCACTGACACAATCTGCGGCCGTACTTTCTTCTCGAATTCCTCTGTCTTCCCGGAGCTACCTGTCTTTGAACTTCATTCCTCAATTGATAGATGGAGCTTTCATTTCACACTTCCTCGTAAATATTCCATATTCCCTACTGGGTGA

mRNA sequence

ATGAGTAGCCATTCATATGGGAAATCGGGCCCGTCCATTGATCGAGGTAGCCAAAGGCATCAACAAGTAGGTTCCGAACTCCTAGCATCGAGCTCAAGGATAGGCCGGCCCAAGGTAGGTTCTCTCGTGAATCCCATGCAGTCATTCATTAAGGCCCAGGAGAAGATGAATAAAGATCCAGATAGAATGTTTGTTTGGCTTTCTCAATTGCTTTCTCAGCCGTGCATAGAATCCCAAGAAGAAAATGTCACCAAAGCGGGAGGCAGGAAAACATACCGACGCAGCGCAGTGCCTTTGATGAATGTAGACCGGAAAGGAATAGGACTTTCTAGTAGTTCCTTCTTCGAAAGTCTAAACTTTGTAGATGGCTTTAACGGTGAGAACCAGGAGGTGGGCTTGGTCTTCACTGACACAATCTGCGGCCGTACTTTCTTCTCGAATTCCTCTGTCTTCCCGGAGCTACCTGTCTTTGAACTTCATTCCTCAATTGATAGATGGAGCTTTCATTTCACACTTCCTCGTAAATATTCCATATTCCCTACTGGGTGA

Coding sequence (CDS)

ATGAGTAGCCATTCATATGGGAAATCGGGCCCGTCCATTGATCGAGGTAGCCAAAGGCATCAACAAGTAGGTTCCGAACTCCTAGCATCGAGCTCAAGGATAGGCCGGCCCAAGGTAGGTTCTCTCGTGAATCCCATGCAGTCATTCATTAAGGCCCAGGAGAAGATGAATAAAGATCCAGATAGAATGTTTGTTTGGCTTTCTCAATTGCTTTCTCAGCCGTGCATAGAATCCCAAGAAGAAAATGTCACCAAAGCGGGAGGCAGGAAAACATACCGACGCAGCGCAGTGCCTTTGATGAATGTAGACCGGAAAGGAATAGGACTTTCTAGTAGTTCCTTCTTCGAAAGTCTAAACTTTGTAGATGGCTTTAACGGTGAGAACCAGGAGGTGGGCTTGGTCTTCACTGACACAATCTGCGGCCGTACTTTCTTCTCGAATTCCTCTGTCTTCCCGGAGCTACCTGTCTTTGAACTTCATTCCTCAATTGATAGATGGAGCTTTCATTTCACACTTCCTCGTAAATATTCCATATTCCCTACTGGGTGA

Protein sequence

MSSHSYGKSGPSIDRGSQRHQQVGSELLASSSRIGRPKVGSLVNPMQSFIKAQEKMNKDPDRMFVWLSQLLSQPCIESQEENVTKAGGRKTYRRSAVPLMNVDRKGIGLSSSSFFESLNFVDGFNGENQEVGLVFTDTICGRTFFSNSSVFPELPVFELHSSIDRWSFHFTLPRKYSIFPTG
Homology
[Close]
BLAST of Csor.00g246360 vs. NCBI nr
Match: KAG6581649.1 (hypothetical protein SDJN03_21651, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 367 bits (941), Expect = 6.04e-128
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0 

Query: 1   MSSHSYGKSGPSIDRGSQRHQQVGSELLASSSRIGRPKVGSLVNPMQSFIKAQEKMNKDP 60
           MSSHSYGKSGPSIDRGSQRHQQVGSELLASSSRIGRPKVGSLVNPMQSFIKAQEKMNKDP
Sbjct: 1   MSSHSYGKSGPSIDRGSQRHQQVGSELLASSSRIGRPKVGSLVNPMQSFIKAQEKMNKDP 60

Query: 61  DRMFVWLSQLLSQPCIESQEENVTKAGGRKTYRRSAVPLMNVDRKGIGLSSSSFFESLNF 120
           DRMFVWLSQLLSQPCIESQEENVTKAGGRKTYRRSAVPLMNVDRKGIGLSSSSFFESLNF
Sbjct: 61  DRMFVWLSQLLSQPCIESQEENVTKAGGRKTYRRSAVPLMNVDRKGIGLSSSSFFESLNF 120

Query: 121 VDGFNGENQEVGLVFTDTICGRTFFSNSSVFPELPVFELHSSIDRWSFHFTLPRKYSIFP 180
           VDGFNGENQEVGLVFTDTICGRTFFSNSSVFPELPVFELHSSIDRWSFHFTLPRKYSIFP
Sbjct: 121 VDGFNGENQEVGLVFTDTICGRTFFSNSSVFPELPVFELHSSIDRWSFHFTLPRKYSIFP 180

Query: 181 TG 182
           TG
Sbjct: 181 TG 182

[Close]
BLAST of Csor.00g246360 vs. NCBI nr
Match: KAG6585972.1 (hypothetical protein SDJN03_18705, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 272 bits (695), Expect = 9.53e-91
Identity = 142/175 (81.14%), Postives = 144/175 (82.29%), Query Frame = 0 

Query: 8   KSGPSIDRGSQRHQQVGSELLASSSRIGRPKVGSLVNPMQSFIKAQEKMNKDPDRMFVWL 67
           KSGPSIDRGSQRHQQV SE                  P     +AQEKMNKDPDRMFVWL
Sbjct: 5   KSGPSIDRGSQRHQQVASET-----------------PSIELKEAQEKMNKDPDRMFVWL 64

Query: 68  SQLLSQPCIESQEENVTKAGGRKTYRRSAVPLMNVDRKGIGLSSSSFFESLNFVDGFNGE 127
           SQ LS+PCIESQEENVTKAGGRKTYRRSAVPLMNVDRKGIGLSSSSFFESL FVDGF GE
Sbjct: 65  SQSLSRPCIESQEENVTKAGGRKTYRRSAVPLMNVDRKGIGLSSSSFFESLKFVDGFKGE 124

Query: 128 NQEVGLVFTDTICGRTFFSNSSVFPELPVFELHSSIDRWSFHFTLPRKYSIFPTG 182
            QEVGLVFTDTI GRTFFSNSSVFPELPVFELHSSIDRWSFHFTLP K SIFPTG
Sbjct: 125 IQEVGLVFTDTISGRTFFSNSSVFPELPVFELHSSIDRWSFHFTLPCKSSIFPTG 162

[Close]
BLAST of Csor.00g246360 vs. NCBI nr
Match: KAG6585981.1 (hypothetical protein SDJN03_18714, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199 bits (506), Expect = 8.49e-62
Identity = 99/107 (92.52%), Postives = 100/107 (93.46%), Query Frame = 0 

Query: 76  IESQEENVTKAGGRKTYRRSAVPLMNVDRKGIGLSSSSFFESLNFVDGFNGENQEVGLVF 135
           +ESQEENVTKAG RKTYRRSAVPLMNVDRKGIGL SSSFFESLNFVDGF GE QEVGLVF
Sbjct: 8   VESQEENVTKAGDRKTYRRSAVPLMNVDRKGIGLFSSSFFESLNFVDGFKGEIQEVGLVF 67

Query: 136 TDTICGRTFFSNSSVFPELPVFELHSSIDRWSFHFTLPRKYSIFPTG 182
           TDTI GRTFFSNSSVFPELPVFELHSSIDRWSFHFTLP K SIFPTG
Sbjct: 68  TDTISGRTFFSNSSVFPELPVFELHSSIDRWSFHFTLPCKSSIFPTG 114

[Close]
BLAST of Csor.00g246360 vs. NCBI nr
Match: KAG6588539.1 (hypothetical protein SDJN03_17104, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177 bits (448), Expect = 3.59e-53
Identity = 87/90 (96.67%), Postives = 87/90 (96.67%), Query Frame = 0 

Query: 90  KTYRRSAVPLMNVDRKGIGLSSSSFFESLNFVDGFNGENQEVGLVFTDTICGRTFFSNSS 149
           KTYRRSAVPLMNVDRKGIGLSSSSFFESLNFVDGF GENQEVGLVFTDTI GRTFFSNSS
Sbjct: 7   KTYRRSAVPLMNVDRKGIGLSSSSFFESLNFVDGFKGENQEVGLVFTDTISGRTFFSNSS 66

Query: 150 VFPELPVFELHSSIDRWSFHFTLPRKYSIF 179
           VFPELPVFELHSSIDRWSFHFTLPRK SIF
Sbjct: 67  VFPELPVFELHSSIDRWSFHFTLPRKSSIF 96

The following BLAST results are available for this feature:
BLAST of Csor.00g246360 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g246360 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6581649.16.04e-128100.00hypothetical protein SDJN03_21651, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585972.19.53e-9181.14hypothetical protein SDJN03_18705, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6585981.18.49e-6292.52hypothetical protein SDJN03_18714, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6588539.13.59e-5396.67hypothetical protein SDJN03_17104, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g246360 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g246360 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g246360.m01Csor.00g246360.m01mRNA