Csor.00g246180 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g246180
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr14: 8992415 .. 8992720 (+)
RNA-Seq Expression	Csor.00g246180
Synteny	Csor.00g246180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACCCACACGGCCCTGCAGCACAAACCTTCGCCCCAGACACTTGCAGTGCCCCAAATCTAAATCAAGCAAACTCACCCTACTTTTGCAACCTGCAATCCGCGCACCTGCACCAGCTCACCCGACAACCCACGCCTCGATTCTAAAAGCTGCCCCACACATGTCAGCTCCTCCCTGTGCCACGTCTCCTCCATACAATCAGCGACTCCTTCCACTCAGTCAGCTTGACTCGGCCCAACGCAACTCTTCGGCTAAAAACTCATCTTCTCGGCTAGATATAAGGAACGTTTACAAATTTCGATAG

mRNA sequence

ATGCAACCCACACGGCCCTGCAGCACAAACCTTCGCCCCAGACACTTGCAGTGCCCCAAATCTAAATCAAGCAAACTCACCCTACTTTTGCAACCTGCAATCCGCGCACCTGCACCAGCTCACCCGACAACCCACGCCTCGATTCTAAAAGCTGCCCCACACATGTCAGCTCCTCCCTGTGCCACGTCTCCTCCATACAATCAGCGACTCCTTCCACTCAGTCAGCTTGACTCGGCCCAACGCAACTCTTCGGCTAAAAACTCATCTTCTCGGCTAGATATAAGGAACGTTTACAAATTTCGATAG

Coding sequence (CDS)

ATGCAACCCACACGGCCCTGCAGCACAAACCTTCGCCCCAGACACTTGCAGTGCCCCAAATCTAAATCAAGCAAACTCACCCTACTTTTGCAACCTGCAATCCGCGCACCTGCACCAGCTCACCCGACAACCCACGCCTCGATTCTAAAAGCTGCCCCACACATGTCAGCTCCTCCCTGTGCCACGTCTCCTCCATACAATCAGCGACTCCTTCCACTCAGTCAGCTTGACTCGGCCCAACGCAACTCTTCGGCTAAAAACTCATCTTCTCGGCTAGATATAAGGAACGTTTACAAATTTCGATAG

Protein sequence

MQPTRPCSTNLRPRHLQCPKSKSSKLTLLLQPAIRAPAPAHPTTHASILKAAPHMSAPPCATSPPYNQRLLPLSQLDSAQRNSSAKNSSSRLDIRNVYKFR

Homology

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BLAST of Csor.00g246180 vs. NCBI nr
Match: KAG6581667.1 (hypothetical protein SDJN03_21669, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197 bits (502), Expect = 1.27e-63
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MQPTRPCSTNLRPRHLQCPKSKSSKLTLLLQPAIRAPAPAHPTTHASILKAAPHMSAPPC 60
           MQPTRPCSTNLRPRHLQCPKSKSSKLTLLLQPAIRAPAPAHPTTHASILKAAPHMSAPPC
Sbjct: 1   MQPTRPCSTNLRPRHLQCPKSKSSKLTLLLQPAIRAPAPAHPTTHASILKAAPHMSAPPC 60

Query: 61  ATSPPYNQRLLPLSQLDSAQRNSSAKNSSSRLDIRNVYKFR 101
           ATSPPYNQRLLPLSQLDSAQRNSSAKNSSSRLDIRNVYKFR
Sbjct: 61  ATSPPYNQRLLPLSQLDSAQRNSSAKNSSSRLDIRNVYKFR 101

The following BLAST results are available for this feature:

BLAST of Csor.00g246180 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g246180 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6581667.1	1.27e-63	100.00	hypothetical protein SDJN03_21669, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g246180 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g246180 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g246180.m01	Csor.00g246180.m01	mRNA