Csor.00g245460 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g245460
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Descriptionglycine-rich cell wall structural protein 2-like
LocationCsor_Chr16: 1096329 .. 1096742 (-)
RNA-Seq ExpressionCsor.00g245460
SyntenyCsor.00g245460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTGGGGATCGCCCAATGGAGGTGGGAATCCCACTGGGGGCTATGGCTCTGCCCATGGTCCTAATTGGGACTATAATTGGGGCTGGGGTTCGAGCCCTGGGAGTGGTTGGGGTTACGGTTCGGGTTCGGTCGCTCCCCGACTGGGTTCGGGAAGGGTTATGGATATGGATTTGGTTCGGGGTCGGGTTCGGGATCTGGATATGGGTATGGAAGCGGAGGTGGTGGGGCTCATGGTGGTGGATATGGCTCCGGAAGTGGCTACGGTAACTCTGGCGACAGTGGCGATGGTGGCGGGTACGGTGGTTCGAGTGGCGGCGGATATGGCAATTCGAGTGGCGGCGAGTATCCTCCGTCGGCCGTTACGAAGGACAAAGCAGGCATGGGTAGAGAAAATGCATGTGGAGGGATAA

mRNA sequence

ATGTATTGGGGATCGCCCAATGGAGGTGGGAATCCCACTGGGGGCTATGGCTCTGCCCATGGTCCTAATTGGGACTATAATTGGGGCTGGGGTTCGAGCCCTGGGAGTGGTTGGGGTTACGGTTCGGGTTCGGTCGCTCCCCGACTGGGTTCGGGAAGGGTTATGGATATGGATTTGGTTCGGGGTCGGGTTCGGGATCTGGATATGGGTATGGAAGCGGAGGTGGTGGGGCTCATGGTGGTGGATATGGCTCCGGAAGTGGCTACGGTAACTCTGGCGACAGTGGCGATGGTGGCGGGTACGGTGGTTCGAGTGGCGGCGGATATGGCAATTCGAGTGGCGGCGAGTATCCTCCGTCGGCCGTTACGAAGGACAAAGCAGGCATGGGTAGAGAAAATGCATGTGGAGGGATAA

Coding sequence (CDS)

ATGTATTGGGGATCGCCCAATGGAGGTGGGAATCCCACTGGGGGCTATGGCTCTGCCCATGGTCCTAATTGGGACTATAATTGGGGCTGGGGTTCGAGCCCTGGGAGTGGTTGGGGTTACGGTTCGGGTTCGGTCGCTCCCCGACTGGGTTCGGGAAGGGTTATGGATATGGATTTGGTTCGGGGTCGGGTTCGGGATCTGGATATGGGTATGGAAGCGGAGGTGGTGGGGCTCATGGTGGTGGATATGGCTCCGGAAGTGGCTACGGTAACTCTGGCGACAGTGGCGATGGTGGCGGGTACGGTGGTTCGAGTGGCGGCGGATATGGCAATTCGAGTGGCGGCGAGTATCCTCCGTCGGCCGTTACGAAGGACAAAGCAGGCATGGGTAGAGAAAATGCATGTGGAGGGATAA

Protein sequence

MYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSVAPRLGSGRVMDMDLVRGRVRDLDMGMEAEVVGLMVVDMAPEVATVTLATVAMVAGTVVRVAADMAIRVAASILRRPLRRTKQAWVEKMHVEG
Homology
BLAST of Csor.00g245460 vs. NCBI nr
Match: KAG6576836.1 (hypothetical protein SDJN03_24410, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 261 bits (666), Expect = 1.75e-87
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 0

Query: 1   MYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSVAPRLGSGRVMDMDLV 60
           MYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSVAPRLGSGRVMDMDLV
Sbjct: 1   MYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSVAPRLGSGRVMDMDLV 60

Query: 61  RGRVRDLDMGMEAEVVGLMVVDMAPEVATVTLATVAMVAGTVVRVAADMAIRVAASILRR 120
           RGRVRDLDMGMEAEVVGLMVVDMAPEVATVTLATVAMVAGTVVRVAADMAIRVAASILRR
Sbjct: 61  RGRVRDLDMGMEAEVVGLMVVDMAPEVATVTLATVAMVAGTVVRVAADMAIRVAASILRR 120

Query: 121 PLRRTKQAWVEKMHVEG 137
           PLRRTKQAWVEKMHVEG
Sbjct: 121 PLRRTKQAWVEKMHVEG 137

BLAST of Csor.00g245460 vs. NCBI nr
Match: XP_022984407.1 (glycine-rich cell wall structural protein 2-like [Cucurbita maxima])

HSP 1 Score: 101 bits (251), Expect = 4.97e-24
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 0

Query: 1  MYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSVAPRLGSGR 53
          MYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGS     G G+
Sbjct: 36 MYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSATGFGK 88

BLAST of Csor.00g245460 vs. NCBI nr
Match: XP_023553046.1 (keratin-associated protein 21-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 100 bits (250), Expect = 7.03e-24
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 0

Query: 1  MYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSVAPRLGSGR 53
          MYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGS     G G+
Sbjct: 36 MYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGK 88

BLAST of Csor.00g245460 vs. NCBI nr
Match: XP_022922583.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG7014856.1 hypothetical protein SDJN02_22486, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100 bits (250), Expect = 7.03e-24
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 0

Query: 1  MYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSVAPRLGSGR 53
          MYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGS     G G+
Sbjct: 36 MYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGK 88

BLAST of Csor.00g245460 vs. NCBI nr
Match: XP_038899364.1 (glycine-rich cell wall structural protein 2-like [Benincasa hispida])

HSP 1 Score: 89.7 bits (221), Expect = 1.63e-19
Identity = 44/56 (78.57%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1  MYWGSPNGGG---NPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSVAPRLGSGR 53
          M WGSPNGGG   NPTG YGSAHGPNWDYNWGWGSSPGSGWGYGSGS     G G+
Sbjct: 41 MSWGSPNGGGGGGNPTGAYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGK 96

BLAST of Csor.00g245460 vs. ExPASy TrEMBL
Match: A0A6J1J236 (glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111482714 PE=4 SV=1)

HSP 1 Score: 101 bits (251), Expect = 2.41e-24
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 0

Query: 1  MYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSVAPRLGSGR 53
          MYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGS     G G+
Sbjct: 36 MYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSATGFGK 88

BLAST of Csor.00g245460 vs. ExPASy TrEMBL
Match: A0A6J1E737 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430548 PE=4 SV=1)

HSP 1 Score: 100 bits (250), Expect = 3.40e-24
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 0

Query: 1  MYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSVAPRLGSGR 53
          MYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGS     G G+
Sbjct: 36 MYWGSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGK 88

BLAST of Csor.00g245460 vs. ExPASy TrEMBL
Match: A0A6J1FQS0 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111447601 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.64e-19
Identity = 42/54 (77.78%), Postives = 46/54 (85.19%), Query Frame = 0

Query: 1  MYWG-SPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSVAPRLGSGR 53
          M WG + NGGGNPTGGYGS+HGPNW+YNWGWGSSPGSGWGYGSGS  P  G G+
Sbjct: 37 MSWGPNGNGGGNPTGGYGSSHGPNWNYNWGWGSSPGSGWGYGSGSGRPSNGFGK 90

BLAST of Csor.00g245460 vs. ExPASy TrEMBL
Match: A0A6J1J8K0 (glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111482719 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.74e-18
Identity = 41/54 (75.93%), Postives = 45/54 (83.33%), Query Frame = 0

Query: 1  MYWG-SPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSVAPRLGSGR 53
          M WG + NGGGNPTGGYGS+HGPNW+YNWGWGSSPGSGWGYGSGS     G G+
Sbjct: 37 MSWGPNGNGGGNPTGGYGSSHGPNWNYNWGWGSSPGSGWGYGSGSGRSSNGFGK 90

BLAST of Csor.00g245460 vs. ExPASy TrEMBL
Match: A0A5A7TRC6 (Glycine-rich cell wall structural protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00320 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.35e-17
Identity = 41/57 (71.93%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 1  MYWGSPNGGG----NPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSVAPRLGSGR 53
          M WGSPNGGG    NPTG YGS H PNWDYNWGWGSSPGSGWG+GSGS     G G+
Sbjct: 40 MSWGSPNGGGGGNGNPTGAYGSGHAPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGK 96

BLAST of Csor.00g245460 vs. TAIR 10
Match: AT5G61660.1 (glycine-rich protein )

HSP 1 Score: 61.2 bits (147), Expect = 7.3e-10
Identity = 29/44 (65.91%), Postives = 32/44 (72.73%), Query Frame = 0

Query: 10 GNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSVAPRLGSGR 54
          GN  G  GS  GPNW+YNWGWGS+PGSGWGYG+GS     G GR
Sbjct: 28 GNMPGESGSGRGPNWEYNWGWGSAPGSGWGYGAGSGRSPTGWGR 71

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6576836.11.75e-87100.00hypothetical protein SDJN03_24410, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022984407.14.97e-2486.79glycine-rich cell wall structural protein 2-like [Cucurbita maxima][more]
XP_023553046.17.03e-2486.79keratin-associated protein 21-1-like [Cucurbita pepo subsp. pepo][more]
XP_022922583.17.03e-2486.79glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG701485... [more]
XP_038899364.11.63e-1978.57glycine-rich cell wall structural protein 2-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A6J1J2362.41e-2486.79glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1E7373.40e-2486.79glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1FQS03.64e-1977.78glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1J8K05.74e-1875.93glycine-rich cell wall structural protein 2-like OS=Cucurbita maxima OX=3661 GN=... [more]
A0A5A7TRC61.35e-1771.93Glycine-rich cell wall structural protein 2 OS=Cucumis melo var. makuwa OX=11946... [more]
Match NameE-valueIdentityDescription
AT5G61660.17.3e-1065.91glycine-rich protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g245460.m01Csor.00g245460.m01mRNA